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(-) Description

Title :  SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN S28E FROM METHANOBACTERIUM THERMOAUTOTROPHICUM. ONTARIO CENTRE FOR STRUCTURAL PROTEOMICS TARGET MTH0256_1_68; NORTHEAST STRUCTURAL GENOMICS TARGET TT744
 
Authors :  B. Wu, A. Pineda-Lucena, A. Yee, J. R. Cort, T. A. Ramelot, M. Kennedy, A. Edwards, C. H. Arrowsmith, Northeast Structural Genomics Consortium (Nesg)
Date :  10 Dec 02  (Deposition) - 23 Dec 03  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Beta Protein, Structural Genomics, Ocsp, Nesg, Protein Structure Initiative, Psi, Northeast Structural Genomics Consortium, Ribosome (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Wu, A. Yee, A. Pineda-Lucena, A. Semesi, T. A. Ramelot, J. R. Cort, J. W. Jung, A. Edwards, W. Lee, M. Kennedy, C. H. Arrowsmith
Solution Structure Of Ribosomal Protein S28E From Methanobacterium Thermoautotrophicum.
Protein Sci. V. 12 2831 2003
PubMed-ID: 14627743  |  Reference-DOI: 10.1110/PS.03358203
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 30S RIBOSOMAL PROTEIN S28E
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET15B
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: METHANOTHERMOCOCCUS THERMOLITHOTROPHICUS
    Organism Taxid: 2186

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:68
 aligned with RS28_METTH | O26356 from UniProtKB/Swiss-Prot  Length:68

    Alignment length:68
                                    10        20        30        40        50        60        
            RS28_METTH    1 MDDATPAEVIEVLKRTGMTGEVMQVKCRILDGRDKGRILTRNVMGPIREGDILMLLDTIREAKEIRTP 68
               SCOP domains d1ne3a_ A: Ribosomal protein S28e                                    SCOP domains
               CATH domains 1ne3A00 A:1-68 Nucleic acid-binding proteins                         CATH domains
               Pfam domains Ribosomal_S28e-1ne3A01 A:1-66                                     -- Pfam domains
         Sec.struct. author ....eeeeeeeee.........eeeeeee........eeeeee........eeee............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------- Transcript
                  1ne3 A  1 MDDATPAEVIEVLKRTGMTGEVMQVKCRILDGRDKGRILTRNVMGPIREGDILMLLDTIREAKEIRTP 68
                                    10        20        30        40        50        60
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: Ribosomal_S28e] (2)

(-) Gene Ontology  (5, 5)

NMR Structure(hide GO term definitions)
Chain A   (RS28_METTH | O26356)
molecular function
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

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