Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym.Unit - manually
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asym.Unit - manually
Asym.Unit - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF PICHIA PASTORIS LYSYL OXIDASE PPLO
 
Authors :  J. M. Guss, A. P. Duff
Date :  24 Nov 02  (Deposition) - 13 Jan 04  (Release) - 29 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Amine Oxidase, Quinoprotein, Topaquinone Enzyme, Tpq, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. P. Duff, A. E. Cohen, P. J. Ellis, J. A. Kuchar, D. B. Langley, E. M. Shepard, D. M. Dooley, H. C. Freeman, J. M. Guss
The Crystal Structure Of Pichia Pastoris Lysyl Oxidase
Biochemistry V. 42 15148 2003
PubMed-ID: 14690425  |  Reference-DOI: 10.1021/BI035338V

(-) Compounds

Molecule 1 - LYSYL OXIDASE
    Chains: A, B, C, D
    EC Number: 1.4.3.13
    Organism Scientific: PICHIA PASTORIS
    Organism Taxid: 4922

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 68)

Asymmetric Unit (5, 68)
No.NameCountTypeFull Name
1CA8Ligand/IonCALCIUM ION
2CU4Ligand/IonCOPPER (II) ION
3NAG24Ligand/IonN-ACETYL-D-GLUCOSAMINE
4SO428Ligand/IonSULFATE ION
5TPQ4Mod. Amino Acid5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE
Biological Unit 1 (3, 28)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CU-1Ligand/IonCOPPER (II) ION
3NAG12Ligand/IonN-ACETYL-D-GLUCOSAMINE
4SO414Ligand/IonSULFATE ION
5TPQ2Mod. Amino Acid5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE
Biological Unit 2 (3, 28)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2CU-1Ligand/IonCOPPER (II) ION
3NAG12Ligand/IonN-ACETYL-D-GLUCOSAMINE
4SO414Ligand/IonSULFATE ION
5TPQ2Mod. Amino Acid5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE

(-) Sites  (60, 60)

Asymmetric Unit (60, 60)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:81 , THR A:83 , PHE A:91 , HOH A:2153 , HOH A:2917BINDING SITE FOR RESIDUE NAG A 1081
02AC2SOFTWAREASN A:104 , PHE A:158 , ASP A:649 , NAG A:1105 , HOH A:2510 , HOH A:2568BINDING SITE FOR RESIDUE NAG A 1104
03AC3SOFTWAREPHE A:158 , NAG A:1104 , HOH A:2300BINDING SITE FOR RESIDUE NAG A 1105
04AC4SOFTWAREASN A:187 , ASN A:191 , ARG A:196 , HOH A:2490 , HOH A:2613 , HOH A:2928BINDING SITE FOR RESIDUE NAG A 1191
05AC5SOFTWAREASP A:302 , ASN A:309 , SER A:311 , SO4 A:814 , HOH A:2943 , HOH A:3094 , HOH C:6928BINDING SITE FOR RESIDUE NAG A 1309
06AC6SOFTWARETHR A:423 , ASN A:434 , THR A:436BINDING SITE FOR RESIDUE NAG A 1434
07AC7SOFTWAREASN B:81 , THR B:83 , PHE B:91 , SER B:92 , HOH B:4153 , HOH B:4917 , ASP C:738 , GLU C:740 , THR C:741BINDING SITE FOR RESIDUE NAG B 1081
08AC8SOFTWAREASN B:104 , PHE B:158 , ASP B:649 , GLU B:650 , NAG B:1105 , HOH B:4510 , HOH B:5052BINDING SITE FOR RESIDUE NAG B 1104
09AC9SOFTWAREGLU B:650 , NAG B:1104 , HOH B:4300 , HOH B:5167BINDING SITE FOR RESIDUE NAG B 1105
10BC1SOFTWAREASN B:187 , ASN B:191 , ARG B:196 , HOH B:4490 , HOH B:4613 , HOH B:4693 , NAG D:1309BINDING SITE FOR RESIDUE NAG B 1191
11BC2SOFTWAREASP B:302 , ASN B:309 , SER B:311 , HOH B:5221BINDING SITE FOR RESIDUE NAG B 1309
12BC3SOFTWARELYS B:66 , THR B:423 , ASN B:434 , HOH B:5013BINDING SITE FOR RESIDUE NAG B 1434
13BC4SOFTWAREGLU B:740 , ASN C:81 , PHE C:91 , HOH C:7272BINDING SITE FOR RESIDUE NAG C 1081
14BC5SOFTWAREASN C:104 , PHE C:158 , ASP C:649 , GLU C:650 , NAG C:1105 , HOH C:6510 , HOH C:7052BINDING SITE FOR RESIDUE NAG C 1104
15BC6SOFTWAREPHE C:158 , NAG C:1104 , HOH C:6424BINDING SITE FOR RESIDUE NAG C 1105
16BC7SOFTWAREASN C:187 , ASN C:191 , ARG C:196 , HOH C:6490 , HOH C:6613 , HOH C:6693 , HOH C:6928 , HOH C:7265BINDING SITE FOR RESIDUE NAG C 1191
17BC8SOFTWAREASP C:302 , ASN C:309 , SER C:311BINDING SITE FOR RESIDUE NAG C 1309
18BC9SOFTWARETHR C:423 , ASN C:434 , THR C:436 , HOH C:7013BINDING SITE FOR RESIDUE NAG C 1434
19CC1SOFTWAREGLU B:67 , ASN D:81BINDING SITE FOR RESIDUE NAG D 1081
20CC2SOFTWAREASN D:104 , PHE D:158 , NAG D:1105 , HOH D:8510BINDING SITE FOR RESIDUE NAG D 1104
21CC3SOFTWAREGLU D:154 , PHE D:158 , NAG D:1104BINDING SITE FOR RESIDUE NAG D 1105
22CC4SOFTWAREASN D:187 , ASN D:191 , ARG D:196 , HOH D:8490 , HOH D:8693BINDING SITE FOR RESIDUE NAG D 1191
23CC5SOFTWARENAG B:1191 , ASP D:302 , ASN D:309 , SER D:311 , HOH D:4972 , HOH D:8893BINDING SITE FOR RESIDUE NAG D 1309
24CC6SOFTWARETHR D:423 , ASN D:434 , THR D:436BINDING SITE FOR RESIDUE NAG D 1434
25CC7SOFTWARETPQ A:478 , HIS A:528 , HIS A:530 , HIS A:694BINDING SITE FOR RESIDUE CU A 801
26CC8SOFTWAREASP A:537 , LEU A:538 , ASP A:539 , ASP A:683 , ILE A:684 , HOH A:2014BINDING SITE FOR RESIDUE CA A 802
27CC9SOFTWAREGLU A:580 , PHE A:673 , ASP A:675 , GLU A:677 , HOH A:2052 , HOH A:2066BINDING SITE FOR RESIDUE CA A 803
28DC1SOFTWARELEU A:483 , LYS A:485 , GLU A:493 , ARG A:497 , HOH A:2213 , HOH A:4356 , HOH A:4651 , ASP B:447 , TYR B:448BINDING SITE FOR RESIDUE SO4 A 810
29DC2SOFTWAREARG A:176 , ASN A:405 , ARG A:772 , HOH A:2295 , HOH A:2526 , HOH A:2553BINDING SITE FOR RESIDUE SO4 A 812
30DC3SOFTWAREPHE A:721 , ASP A:722 , SER A:723 , ASN A:725 , HOH A:2322 , HOH A:3120BINDING SITE FOR RESIDUE SO4 A 813
31DC4SOFTWAREASN A:300 , LEU A:301 , ASP A:302 , TRP A:303 , NAG A:1309 , HOH A:2943 , HOH A:3109BINDING SITE FOR RESIDUE SO4 A 814
32DC5SOFTWARELYS A:164 , SER A:165 , LYS A:166 , HOH A:2325 , HOH A:2626 , HOH A:2887BINDING SITE FOR RESIDUE SO4 A 815
33DC6SOFTWAREASN A:50 , ARG A:331 , TYR A:335 , HOH A:2331 , HOH A:2384BINDING SITE FOR RESIDUE SO4 A 816
34DC7SOFTWARETPQ B:478 , HIS B:528 , HIS B:530 , HIS B:694BINDING SITE FOR RESIDUE CU B 801
35DC8SOFTWAREASP B:537 , LEU B:538 , ASP B:539 , ASP B:683 , ILE B:684 , HOH B:4014BINDING SITE FOR RESIDUE CA B 1802
36DC9SOFTWAREGLU B:580 , PHE B:673 , ASP B:675 , GLU B:677 , HOH B:4052 , HOH B:4066BINDING SITE FOR RESIDUE CA B 1803
37EC1SOFTWAREASP A:447 , TYR A:448 , LEU B:483 , LYS B:485 , GLU B:493 , ARG B:497 , HOH B:2356 , HOH B:2651 , HOH B:4213BINDING SITE FOR RESIDUE SO4 B 820
38EC2SOFTWAREARG B:176 , ASN B:405 , ARG B:772 , HOH B:4295 , HOH B:4405 , HOH B:4553BINDING SITE FOR RESIDUE SO4 B 822
39EC3SOFTWAREPHE B:721 , ASP B:722 , SER B:723 , ASN B:725 , HOH B:4820 , HOH B:4842 , HOH B:5034BINDING SITE FOR RESIDUE SO4 B 823
40EC4SOFTWAREASN B:300 , LEU B:301 , ASP B:302 , TRP B:303 , HOH B:4292 , HOH B:4943 , HOH B:5199BINDING SITE FOR RESIDUE SO4 B 824
41EC5SOFTWARELYS B:164 , SER B:165 , LYS B:166 , HOH B:4325 , HOH B:4626 , HOH B:5048BINDING SITE FOR RESIDUE SO4 B 825
42EC6SOFTWAREASN B:50 , ARG B:331 , TYR B:335 , GLY B:420 , HOH B:4331 , HOH B:4384 , HOH B:4846 , HOH B:5027BINDING SITE FOR RESIDUE SO4 B 826
43EC7SOFTWARETPQ C:478 , HIS C:528 , HIS C:530 , HIS C:694BINDING SITE FOR RESIDUE CU C 801
44EC8SOFTWAREASP C:537 , LEU C:538 , ASP C:539 , ASP C:683 , ILE C:684 , HOH C:6014BINDING SITE FOR RESIDUE CA C 3802
45EC9SOFTWAREGLU C:580 , PHE C:673 , ASP C:675 , GLU C:677 , HOH C:6052 , HOH C:6066BINDING SITE FOR RESIDUE CA C 3803
46FC1SOFTWARELEU C:483 , LYS C:485 , GLU C:493 , ARG C:497 , HOH C:6213 , HOH C:8356 , HOH C:8651 , ASP D:447 , TYR D:448BINDING SITE FOR RESIDUE SO4 C 830
47FC2SOFTWAREARG C:176 , ARG C:772 , HOH C:6295 , HOH C:6553 , HOH C:7075 , HOH C:7253BINDING SITE FOR RESIDUE SO4 C 832
48FC3SOFTWAREPHE C:721 , ASP C:722 , SER C:723 , ASN C:725 , HOH C:6322 , HOH C:6820 , HOH C:6842 , HOH C:7034BINDING SITE FOR RESIDUE SO4 C 833
49FC4SOFTWAREASN C:300 , LEU C:301 , ASP C:302 , TRP C:303 , HOH C:6292BINDING SITE FOR RESIDUE SO4 C 834
50FC5SOFTWARELYS C:164 , SER C:165 , LYS C:166 , HOH C:6325 , HOH C:6626BINDING SITE FOR RESIDUE SO4 C 835
51FC6SOFTWAREASN C:50 , ARG C:331 , TYR C:335 , HOH C:6331BINDING SITE FOR RESIDUE SO4 C 836
52FC7SOFTWARETPQ D:478 , HIS D:528 , HIS D:530 , HIS D:694BINDING SITE FOR RESIDUE CU D 801
53FC8SOFTWAREASP D:537 , LEU D:538 , ASP D:539 , ASP D:683 , ILE D:684 , HOH D:8014BINDING SITE FOR RESIDUE CA D 5802
54FC9SOFTWAREGLU D:580 , PHE D:673 , ASP D:675 , GLU D:677 , HOH D:8052 , HOH D:8066BINDING SITE FOR RESIDUE CA D 5803
55GC1SOFTWAREASP C:447 , TYR C:448 , LEU D:483 , LYS D:485 , GLU D:493 , ARG D:497 , HOH D:6356 , HOH D:6651 , HOH D:8213BINDING SITE FOR RESIDUE SO4 D 840
56GC2SOFTWAREARG D:176 , ARG D:772 , HOH D:8295 , HOH D:8405 , HOH D:9075BINDING SITE FOR RESIDUE SO4 D 842
57GC3SOFTWAREPHE D:721 , ASP D:722 , SER D:723 , ASN D:725 , HOH D:8322 , HOH D:8820 , HOH D:8842BINDING SITE FOR RESIDUE SO4 D 843
58GC4SOFTWAREASN D:300 , LEU D:301 , ASP D:302 , TRP D:303 , HOH D:8320BINDING SITE FOR RESIDUE SO4 D 844
59GC5SOFTWARELYS D:164 , SER D:165 , LYS D:166 , HOH D:8325 , HOH D:8626 , HOH D:8887BINDING SITE FOR RESIDUE SO4 D 845
60GC6SOFTWAREASN D:50 , ARG D:331 , TYR D:335 , HOH D:8331 , HOH D:8846 , HOH D:9027BINDING SITE FOR RESIDUE SO4 D 846

(-) SS Bonds  (12, 12)

Asymmetric Unit
No.Residues
1A:45 -A:756
2A:212 -A:233
3A:415 -A:440
4B:45 -B:756
5B:212 -B:233
6B:415 -B:440
7C:45 -C:756
8C:212 -C:233
9C:415 -C:440
10D:45 -D:756
11D:212 -D:233
12D:415 -D:440

(-) Cis Peptide Bonds  (16, 16)

Asymmetric Unit
No.Residues
1Gly A:143 -Pro A:144
2Leu A:145 -Pro A:146
3Ala A:216 -Pro A:217
4Leu A:701 -Pro A:702
5Gly B:143 -Pro B:144
6Leu B:145 -Pro B:146
7Ala B:216 -Pro B:217
8Leu B:701 -Pro B:702
9Gly C:143 -Pro C:144
10Leu C:145 -Pro C:146
11Ala C:216 -Pro C:217
12Leu C:701 -Pro C:702
13Gly D:143 -Pro D:144
14Leu D:145 -Pro D:146
15Ala D:216 -Pro D:217
16Leu D:701 -Pro D:702

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1N9E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1N9E)

(-) Exons   (0, 0)

(no "Exon" information available for 1N9E)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:735
 aligned with Q96X16_PICPA | Q96X16 from UniProtKB/TrEMBL  Length:787

    Alignment length:735
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770     
         Q96X16_PICPA    41 ASAECVSNENVEIEAPKTNIWTSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIETLKPNKTEALTYLDEDGDLPPRNARTVVYFGEGEEGYFEELKVGPLPVSDETTIEPLSFYNTNGKSKLPFEVGHLDRIKSAAKSSFLNKNLNTTIMRDVLEGLIGVPYEDMGCHSAAPQLHDPATGATVDYGTCNINTENDAENLVPTGFFFKFDMTGRDVSQWKMLEYIYNNKVYTSAEELYEAMQKDDFVTLPKIDVDNLDWTVIQRNDSAPIRHLDDRKSPRLVEPEGRRWAYDGEEEYFSWMDWGFYTSWSRDTGISFYDITFKGERIVYELSLQELIAEYGSDDPFNQHTFYSDISYGVGNRFSLVPGYDCPATAGYFTTDTFEYDEFYNRTLSYCVFENQEDYSLLRHTGASYSAITQNPTLNVRFISTIGNYDYNFLYKFFLDGTLEVSVRAAGYIQAGYWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKNRASKYVMKDVDVEYPWAPGTVYNTKQIAREVLEKEDFNGINWPENGQGILLIESAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARSNLFLTKHKDEELRSSTALNTNALYDPPVNFNAFLDDESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAHASFMLTPFNYFDSENSRDTTQQVFYTYDDETEESNWEFYGNDWSSCGLEVPEPNFEDYTYGRGTR 775
               SCOP domains d1n9ea2 A:41-169 Lysyl oxidase PplO, domains 1 and 2                                                                             d1n9ea3 A:170-315 Lysyl oxidase PplO, domains 1 and 2                                                                                             d1n9ea1 A:316-775 Lysyl oxidase PplO, domain 3                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1n9eA01          1n9eA02 A:58-174  [code=3.10.450.40, no name defined]                                                                1n9eA03 A:175-289  [code=3.10.450.40, no name defined]                                                             1n9eA01 A:41-57,A:290-775 Copper amine oxidase, Domain 3                                                                                                                                                                                                                                                                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........ee............hhhhhhhhhhhhhhhh...hhhhh....eeeeeeeee..hhhhhhhhhhh.......eeeeeeee......eeeeeeee........eeee..........eee.hhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeee....ee......eeeeeeeee.....hhhh.eeeeeeeee....hhhhheeeeeee..eee.hhhhhhhhhhh.............hhhhh..................eee.......eee....eeee..eeeeeeee...eeeeeeeee..eeeeeeeeeeeeeeeee....hhhh.eeehhhhh.................eeeeeeeee..eeeeeeeeeeeeeee.....eeeee..eeeee..eeeeeeeee......eeeeeee.....eeeeeee......ee.....hhhhh.eee..ee..eeeeeeeeeeee.....eeeeeeeeeeeeeee.......eeeeeeeeeee...........hhhh.eeeeeeeeeee.....eeeeeeee..................hhhhhh.eeeee......................hhhhhh.......eeeeeeeeeeeee..hhhhh........eeeeeeeee.............eeeeeee....eeeee........eeeee...hhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n9e A  41 ASAECVSNENVEIEAPKTNIWTSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIETLKPNKTEALTYLDEDGDLPPRNARTVVYFGEGEEGYFEELKVGPLPVSDETTIEPLSFYNTNGKSKLPFEVGHLDRIKSAAKSSFLNKNLNTTIMRDVLEGLIGVPYEDMGCHSAAPQLHDPATGATVDYGTCNINTENDAENLVPTGFFFKFDMTGRDVSQWKMLEYIYNNKVYTSAEELYEAMQKDDFVTLPKIDVDNLDWTVIQRNDSAPIRHLDDRKSPRLVEPEGRRWAYDGEEEYFSWMDWGFYTSWSRDTGISFYDITFKGERIVYELSLQELIAEYGSDDPFNQHTFYSDISYGVGNRFSLVPGYDCPATAGYFTTDTFEYDEFYNRTLSYCVFENQEDYSLLRHTGASYSAITQNPTLNVRFISTIGNyDYNFLYKFFLDGTLEVSVRAAGYIQAGYWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKNRASKYVMKDVDVEYPWAPGTVYNTKQIAREVLEKEDFNGINWPENGQGILLIESAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARSNLFLTKHKDEELRSSTALNTNALYDPPVNFNAFLDDESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAHASFMLTPFNYFDSENSRDTTQQVFYTYDDETEESNWEFYGNDWSSCGLEVPEPNFEDYTYGRGTR 775
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                               478-TPQ                                                                                                                                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:735
 aligned with Q96X16_PICPA | Q96X16 from UniProtKB/TrEMBL  Length:787

    Alignment length:735
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770     
         Q96X16_PICPA    41 ASAECVSNENVEIEAPKTNIWTSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIETLKPNKTEALTYLDEDGDLPPRNARTVVYFGEGEEGYFEELKVGPLPVSDETTIEPLSFYNTNGKSKLPFEVGHLDRIKSAAKSSFLNKNLNTTIMRDVLEGLIGVPYEDMGCHSAAPQLHDPATGATVDYGTCNINTENDAENLVPTGFFFKFDMTGRDVSQWKMLEYIYNNKVYTSAEELYEAMQKDDFVTLPKIDVDNLDWTVIQRNDSAPIRHLDDRKSPRLVEPEGRRWAYDGEEEYFSWMDWGFYTSWSRDTGISFYDITFKGERIVYELSLQELIAEYGSDDPFNQHTFYSDISYGVGNRFSLVPGYDCPATAGYFTTDTFEYDEFYNRTLSYCVFENQEDYSLLRHTGASYSAITQNPTLNVRFISTIGNYDYNFLYKFFLDGTLEVSVRAAGYIQAGYWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKNRASKYVMKDVDVEYPWAPGTVYNTKQIAREVLEKEDFNGINWPENGQGILLIESAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARSNLFLTKHKDEELRSSTALNTNALYDPPVNFNAFLDDESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAHASFMLTPFNYFDSENSRDTTQQVFYTYDDETEESNWEFYGNDWSSCGLEVPEPNFEDYTYGRGTR 775
               SCOP domains d1n9eb2 B:41-169 Lysyl oxidase PplO, domains 1 and 2                                                                             d1n9eb3 B:170-315 Lysyl oxidase PplO, domains 1 and 2                                                                                             d1n9eb1 B:316-775 Lysyl oxidase PplO, domain 3                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1n9eB01          1n9eB02 B:58-174  [code=3.10.450.40, no name defined]                                                                1n9eB03 B:175-289  [code=3.10.450.40, no name defined]                                                             1n9eB01 B:41-57,B:290-775 Copper amine oxidase, Domain 3                                                                                                                                                                                                                                                                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........ee............hhhhhhhhhhhhhhhh...hhhhh....eeeeeeeee..hhhhhhhhhhh.......eeeeeeee......eeeeeeee........eeee..........eee.hhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeee....ee......eeeeeeeee.....hhhh.eeeeeeeee....hhhhheeeeeee..eee.hhhhhhhhhhh.............hhhhh..................eee.......eee....eeee..eeeeeeee...eeeeeeeee..eeeeeeeeeeeeeeee.....hhhh.eeehhhhh.................eeeeeeeee..eeeeeeeeeeeeeee.....eeeee..eeeee..eeeeeeeee......eeeeeee.....eeeeeee......ee.....hhhhh.eee..ee...eeeeeeeeeee.....eeeeeeeeeeeeeee.......eeeeeeeeeee...........hhhh.eeeeeeeeeee.....eeeeeeee..................hhhhhh.eeeee......................hhhhhh.......eeeeeeeeeeeee..hhhhh........eeeeeeeee.............eeeeee......eeee........eeeee...hhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n9e B  41 ASAECVSNENVEIEAPKTNIWTSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIETLKPNKTEALTYLDEDGDLPPRNARTVVYFGEGEEGYFEELKVGPLPVSDETTIEPLSFYNTNGKSKLPFEVGHLDRIKSAAKSSFLNKNLNTTIMRDVLEGLIGVPYEDMGCHSAAPQLHDPATGATVDYGTCNINTENDAENLVPTGFFFKFDMTGRDVSQWKMLEYIYNNKVYTSAEELYEAMQKDDFVTLPKIDVDNLDWTVIQRNDSAPIRHLDDRKSPRLVEPEGRRWAYDGEEEYFSWMDWGFYTSWSRDTGISFYDITFKGERIVYELSLQELIAEYGSDDPFNQHTFYSDISYGVGNRFSLVPGYDCPATAGYFTTDTFEYDEFYNRTLSYCVFENQEDYSLLRHTGASYSAITQNPTLNVRFISTIGNyDYNFLYKFFLDGTLEVSVRAAGYIQAGYWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKNRASKYVMKDVDVEYPWAPGTVYNTKQIAREVLEKEDFNGINWPENGQGILLIESAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARSNLFLTKHKDEELRSSTALNTNALYDPPVNFNAFLDDESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAHASFMLTPFNYFDSENSRDTTQQVFYTYDDETEESNWEFYGNDWSSCGLEVPEPNFEDYTYGRGTR 775
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                               478-TPQ                                                                                                                                                                                                                                                                                                     


Chain C from PDB  Type:PROTEIN  Length:735
 aligned with Q96X16_PICPA | Q96X16 from UniProtKB/TrEMBL  Length:787

    Alignment length:735
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770     
         Q96X16_PICPA    41 ASAECVSNENVEIEAPKTNIWTSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIETLKPNKTEALTYLDEDGDLPPRNARTVVYFGEGEEGYFEELKVGPLPVSDETTIEPLSFYNTNGKSKLPFEVGHLDRIKSAAKSSFLNKNLNTTIMRDVLEGLIGVPYEDMGCHSAAPQLHDPATGATVDYGTCNINTENDAENLVPTGFFFKFDMTGRDVSQWKMLEYIYNNKVYTSAEELYEAMQKDDFVTLPKIDVDNLDWTVIQRNDSAPIRHLDDRKSPRLVEPEGRRWAYDGEEEYFSWMDWGFYTSWSRDTGISFYDITFKGERIVYELSLQELIAEYGSDDPFNQHTFYSDISYGVGNRFSLVPGYDCPATAGYFTTDTFEYDEFYNRTLSYCVFENQEDYSLLRHTGASYSAITQNPTLNVRFISTIGNYDYNFLYKFFLDGTLEVSVRAAGYIQAGYWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKNRASKYVMKDVDVEYPWAPGTVYNTKQIAREVLEKEDFNGINWPENGQGILLIESAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARSNLFLTKHKDEELRSSTALNTNALYDPPVNFNAFLDDESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAHASFMLTPFNYFDSENSRDTTQQVFYTYDDETEESNWEFYGNDWSSCGLEVPEPNFEDYTYGRGTR 775
               SCOP domains d1n9ec2 C:41-169 Lysyl oxidase PplO, domains 1 and 2                                                                             d1n9ec3 C:170-315 Lysyl oxidase PplO, domains 1 and 2                                                                                             d1n9ec1 C:316-775 Lysyl oxidase PplO, domain 3                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1n9eC01          1n9eC02 C:58-174  [code=3.10.450.40, no name defined]                                                                1n9eC03 C:175-289  [code=3.10.450.40, no name defined]                                                             1n9eC01 C:41-57,C:290-775 Copper amine oxidase, Domain 3                                                                                                                                                                                                                                                                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........ee............hhhhhhhhhhhhhhhh...hhhhh....eeeeeeeee..hhhhhhhhhhh.......eeeeeeee......eeeeeeee........eeee..........eee.hhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeee....ee......eeeeeeeee.....hhhh.eeeeeeeee....hhhhheeeeeee..eee.hhhhhhhhh...............hhhhh..................eee.......eee....eeee..eeeeeeee...eeeeeeeee..eeeeeeeeeeeeeeee.....hhhh.eeehhhhh.................eeeeeeeee..eeeeeeeeeeeeeee.....eeeee..eeeee..eeeeeeeee......eeeeeee.....eeeeeee......ee.....hhh.eeeee..eeee.eeeeeeeeeee.....eeeeeeeeeeeeeee.......eeeeeeeeeee...........hhhh.eeeeeeeeeee.....eeeeeeee..................hhhhhh.eeeee......................hhhhhh.......eeeeeeeeeeeee..hhhhh........eeeeeeeee.............eeeeeee....eeeee........eeeee...hhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n9e C  41 ASAECVSNENVEIEAPKTNIWTSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIETLKPNKTEALTYLDEDGDLPPRNARTVVYFGEGEEGYFEELKVGPLPVSDETTIEPLSFYNTNGKSKLPFEVGHLDRIKSAAKSSFLNKNLNTTIMRDVLEGLIGVPYEDMGCHSAAPQLHDPATGATVDYGTCNINTENDAENLVPTGFFFKFDMTGRDVSQWKMLEYIYNNKVYTSAEELYEAMQKDDFVTLPKIDVDNLDWTVIQRNDSAPIRHLDDRKSPRLVEPEGRRWAYDGEEEYFSWMDWGFYTSWSRDTGISFYDITFKGERIVYELSLQELIAEYGSDDPFNQHTFYSDISYGVGNRFSLVPGYDCPATAGYFTTDTFEYDEFYNRTLSYCVFENQEDYSLLRHTGASYSAITQNPTLNVRFISTIGNyDYNFLYKFFLDGTLEVSVRAAGYIQAGYWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKNRASKYVMKDVDVEYPWAPGTVYNTKQIAREVLEKEDFNGINWPENGQGILLIESAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARSNLFLTKHKDEELRSSTALNTNALYDPPVNFNAFLDDESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAHASFMLTPFNYFDSENSRDTTQQVFYTYDDETEESNWEFYGNDWSSCGLEVPEPNFEDYTYGRGTR 775
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                               478-TPQ                                                                                                                                                                                                                                                                                                     


Chain D from PDB  Type:PROTEIN  Length:735
 aligned with Q96X16_PICPA | Q96X16 from UniProtKB/TrEMBL  Length:787

    Alignment length:735
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770     
         Q96X16_PICPA    41 ASAECVSNENVEIEAPKTNIWTSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIETLKPNKTEALTYLDEDGDLPPRNARTVVYFGEGEEGYFEELKVGPLPVSDETTIEPLSFYNTNGKSKLPFEVGHLDRIKSAAKSSFLNKNLNTTIMRDVLEGLIGVPYEDMGCHSAAPQLHDPATGATVDYGTCNINTENDAENLVPTGFFFKFDMTGRDVSQWKMLEYIYNNKVYTSAEELYEAMQKDDFVTLPKIDVDNLDWTVIQRNDSAPIRHLDDRKSPRLVEPEGRRWAYDGEEEYFSWMDWGFYTSWSRDTGISFYDITFKGERIVYELSLQELIAEYGSDDPFNQHTFYSDISYGVGNRFSLVPGYDCPATAGYFTTDTFEYDEFYNRTLSYCVFENQEDYSLLRHTGASYSAITQNPTLNVRFISTIGNYDYNFLYKFFLDGTLEVSVRAAGYIQAGYWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKNRASKYVMKDVDVEYPWAPGTVYNTKQIAREVLEKEDFNGINWPENGQGILLIESAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARSNLFLTKHKDEELRSSTALNTNALYDPPVNFNAFLDDESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAHASFMLTPFNYFDSENSRDTTQQVFYTYDDETEESNWEFYGNDWSSCGLEVPEPNFEDYTYGRGTR 775
               SCOP domains d1n9ed2 D:41-169 Lysyl oxidase PplO, domains 1 and 2                                                                             d1n9ed3 D:170-315 Lysyl oxidase PplO, domains 1 and 2                                                                                             d1n9ed1 D:316-775 Lysyl oxidase PplO, domain 3                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1n9eD01          1n9eD02 D:58-174  [code=3.10.450.40, no name defined]                                                                1n9eD03 D:175-289  [code=3.10.450.40, no name defined]                                                             1n9eD01 D:41-57,D:290-775 Copper amine oxidase, Domain 3                                                                                                                                                                                                                                                                                                                                                                                                                                               CATH domains
           Pfam domains (1) ---------------------Cu_amine_oxidN2-1n9eD01 D:62-151                                                          ---------------------------------------------------------------------------------------DUF1965-1n9eD09 D:239-314                                                   --------Cu_amine_oxid-1n9eD05 D:323-734                                                                                                                                                                                                                                                                                                                                                                                             ----------------------------------------- Pfam domains (1)
           Pfam domains (2) ---------------------Cu_amine_oxidN2-1n9eD02 D:62-151                                                          ---------------------------------------------------------------------------------------DUF1965-1n9eD10 D:239-314                                                   --------Cu_amine_oxid-1n9eD06 D:323-734                                                                                                                                                                                                                                                                                                                                                                                             ----------------------------------------- Pfam domains (2)
           Pfam domains (3) ---------------------Cu_amine_oxidN2-1n9eD03 D:62-151                                                          ---------------------------------------------------------------------------------------DUF1965-1n9eD11 D:239-314                                                   --------Cu_amine_oxid-1n9eD07 D:323-734                                                                                                                                                                                                                                                                                                                                                                                             ----------------------------------------- Pfam domains (3)
           Pfam domains (4) ---------------------Cu_amine_oxidN2-1n9eD04 D:62-151                                                          ---------------------------------------------------------------------------------------DUF1965-1n9eD12 D:239-314                                                   --------Cu_amine_oxid-1n9eD08 D:323-734                                                                                                                                                                                                                                                                                                                                                                                             ----------------------------------------- Pfam domains (4)
         Sec.struct. author ..........ee............hhhhhhhhhhhhhhhh...hhhhh....eeeeeeeee..hhhhhhhhhhh.......eeeeeeee......eeeeeeee........eeee..........eee.hhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eeeee....ee......eeeeeeeee.....hhhh.eeeeeeeee....hhhhheeeeeee..eee.hhhhhhhhhhh.............hhhhh..................eee.......eee....eeee..eeeeeeee...eeeeeeeee..eeeeeeeeeeeeeeee.....hhhh.eeehhhhh.................eeeeeeeee..eeeeeeeeeeeeeee.....eeeee..eeeee..eeeeeeeee......eeeeeee.....eeeeeee......ee.....hhh.eeeee..eeee.eeeeeeeeeee.....eeeeeeeeeeeeeee.......eeeeeeeeeeee..........hhhh.eeeeeeeeeee.....eeeeeeee..................hhhhhh.eeeee......................hhhhhh.......eeeeeeeeeeeee..hhhhh........eeeeeeeee.............eeeeeee....eeeee........eeeee...hhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n9e D  41 ASAECVSNENVEIEAPKTNIWTSLAKEEVQEVLDLLHSTYNITEVTKADFFSNYVLWIETLKPNKTEALTYLDEDGDLPPRNARTVVYFGEGEEGYFEELKVGPLPVSDETTIEPLSFYNTNGKSKLPFEVGHLDRIKSAAKSSFLNKNLNTTIMRDVLEGLIGVPYEDMGCHSAAPQLHDPATGATVDYGTCNINTENDAENLVPTGFFFKFDMTGRDVSQWKMLEYIYNNKVYTSAEELYEAMQKDDFVTLPKIDVDNLDWTVIQRNDSAPIRHLDDRKSPRLVEPEGRRWAYDGEEEYFSWMDWGFYTSWSRDTGISFYDITFKGERIVYELSLQELIAEYGSDDPFNQHTFYSDISYGVGNRFSLVPGYDCPATAGYFTTDTFEYDEFYNRTLSYCVFENQEDYSLLRHTGASYSAITQNPTLNVRFISTIGNyDYNFLYKFFLDGTLEVSVRAAGYIQAGYWNPETSAPYGLKIHDVLSGSFHDHVLNYKVDLDVGGTKNRASKYVMKDVDVEYPWAPGTVYNTKQIAREVLEKEDFNGINWPENGQGILLIESAEETNSFGNPRAYNIMPGGGGVHRIVKNSRSGPETQNWARSNLFLTKHKDEELRSSTALNTNALYDPPVNFNAFLDDESLDGEDIVAWVNLGLHHLPNSNDLPNTIFSTAHASFMLTPFNYFDSENSRDTTQQVFYTYDDETEESNWEFYGNDWSSCGLEVPEPNFEDYTYGRGTR 775
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770     
                                                                                                                                                                                                                                                                                                                                                                                                                                                                               478-TPQ
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (3, 12)

Asymmetric Unit
(-)
Clan: CuAO_N2_N3 (40)
(-)
Clan: no clan defined [family: Cu_amine_oxid] (40)
(-)
Clan: no clan defined [family: DUF1965] (3)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q96X16_PICPA | Q96X16)
molecular function
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0052597    diamine oxidase activity    Catalysis of the reaction: a diamine + H2O + O2 = a monoamine + NH3 + hydrogen peroxide.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0008131    primary amine oxidase activity    Catalysis of the reaction: a primary amine + H2O + O2 = an aldehyde + NH3 + hydrogen peroxide.
    GO:0048038    quinone binding    Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds.
biological process
    GO:0009308    amine metabolic process    The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom.
    GO:0071241    cellular response to inorganic substance    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    CA  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    CU  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NAG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    TPQ  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
    DC8  [ RasMol ]  +environment [ RasMol ]
    DC9  [ RasMol ]  +environment [ RasMol ]
    EC1  [ RasMol ]  +environment [ RasMol ]
    EC2  [ RasMol ]  +environment [ RasMol ]
    EC3  [ RasMol ]  +environment [ RasMol ]
    EC4  [ RasMol ]  +environment [ RasMol ]
    EC5  [ RasMol ]  +environment [ RasMol ]
    EC6  [ RasMol ]  +environment [ RasMol ]
    EC7  [ RasMol ]  +environment [ RasMol ]
    EC8  [ RasMol ]  +environment [ RasMol ]
    EC9  [ RasMol ]  +environment [ RasMol ]
    FC1  [ RasMol ]  +environment [ RasMol ]
    FC2  [ RasMol ]  +environment [ RasMol ]
    FC3  [ RasMol ]  +environment [ RasMol ]
    FC4  [ RasMol ]  +environment [ RasMol ]
    FC5  [ RasMol ]  +environment [ RasMol ]
    FC6  [ RasMol ]  +environment [ RasMol ]
    FC7  [ RasMol ]  +environment [ RasMol ]
    FC8  [ RasMol ]  +environment [ RasMol ]
    FC9  [ RasMol ]  +environment [ RasMol ]
    GC1  [ RasMol ]  +environment [ RasMol ]
    GC2  [ RasMol ]  +environment [ RasMol ]
    GC3  [ RasMol ]  +environment [ RasMol ]
    GC4  [ RasMol ]  +environment [ RasMol ]
    GC5  [ RasMol ]  +environment [ RasMol ]
    GC6  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ala A:216 - Pro A:217   [ RasMol ]  
    Ala B:216 - Pro B:217   [ RasMol ]  
    Ala C:216 - Pro C:217   [ RasMol ]  
    Ala D:216 - Pro D:217   [ RasMol ]  
    Gly A:143 - Pro A:144   [ RasMol ]  
    Gly B:143 - Pro B:144   [ RasMol ]  
    Gly C:143 - Pro C:144   [ RasMol ]  
    Gly D:143 - Pro D:144   [ RasMol ]  
    Leu A:145 - Pro A:146   [ RasMol ]  
    Leu A:701 - Pro A:702   [ RasMol ]  
    Leu B:145 - Pro B:146   [ RasMol ]  
    Leu B:701 - Pro B:702   [ RasMol ]  
    Leu C:145 - Pro C:146   [ RasMol ]  
    Leu C:701 - Pro C:702   [ RasMol ]  
    Leu D:145 - Pro D:146   [ RasMol ]  
    Leu D:701 - Pro D:702   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1n9e
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q96X16_PICPA | Q96X16
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  1.4.3.13
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q96X16_PICPA | Q96X16
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q96X16_PICPA | Q96X16: 1rky 1w7c

(-) Related Entries Specified in the PDB File

1a2v HPAO: HANSENULA POLYMORPHA COPPER AMINE OXIDASE
1av4 AGAO: ARTHROBACTER GLOBIFORMIS COPPER AMINE OXIDASE
1ksi PSAO: PEA SEEDLING COPPER AMINE OXIDASE
1oac ECAO: E. COLI COPPER AMINE OXIDASE