1N97 - JenaLib

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Title :   CRYSTAL STRUCTURE OF CYP175A1 FROM THERMUS THERMOPHILLUS STRAIN HB27

Authors :   J. K. Yano, F. Blasco, H. Li, R. D. Schmid, A. Henne, T. L. Poulos

Date :   22 Nov 02 (Deposition) - 25 Feb 03 (Release) - 01 Feb 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   P450, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. K. Yano, F. Blasco, H. Li, R. D. Schmid, A. Henne, T. L. Poulos
Preliminary Characterization And Crystal Structure Of A Thermostable Cytochrome P450 From Thermus Thermophilus
J. Biol. Chem. V. 278 608 2003
PubMed-ID: 12401810 | Reference-DOI: 10.1074/JBC.M206568200

Molecule 1 - CYP175A1
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21 CODON PLUS
	Expression System Taxid	:	562
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	262724
	Other Details	:	CYTOCHROME P450
	Strain	:	HB27

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 22)

No.	Name	Count	Type	Full Name
1	EDO	18	Ligand/Ion	1,2-ETHANEDIOL
2	HEM	2	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	SRT	2	Ligand/Ion	S,R MESO-TARTARIC ACID

Biological Unit 1 (3, 9)

No.	Name	Count	Type	Full Name
1	EDO	7	Ligand/Ion	1,2-ETHANEDIOL
2	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	SRT	1	Ligand/Ion	S,R MESO-TARTARIC ACID

Biological Unit 2 (3, 13)

No.	Name	Count	Type	Full Name
1	EDO	11	Ligand/Ion	1,2-ETHANEDIOL
2	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	SRT	1	Ligand/Ion	S,R MESO-TARTARIC ACID

Asymmetric Unit (22, 22)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLN A:259 , ARG A:319 , GLY A:320 , THR A:321 , ARG A:339 , HOH A:738 , HOH A:867 , HOH A:917	BINDING SITE FOR RESIDUE SRT A 601
02	AC2	SOFTWARE	GLN B:259 , ARG B:319 , GLY B:320 , THR B:321 , ARG B:339 , HOH B:766 , HOH B:776 , HOH B:920	BINDING SITE FOR RESIDUE SRT B 602
03	AC3	SOFTWARE	LYS A:63 , TYR A:68 , LEU A:79 , TRP A:87 , ARG A:91 , LEU A:140 , ALA A:221 , GLY A:222 , THR A:225 , ARG A:273 , PRO A:328 , PHE A:329 , GLY A:330 , ARG A:334 , CYS A:336 , GLY A:338 , HOH A:781 , HOH A:784	BINDING SITE FOR RESIDUE HEM A 602
04	AC4	SOFTWARE	LYS B:63 , TYR B:68 , LEU B:79 , LEU B:80 , TRP B:87 , ARG B:91 , LEU B:218 , ALA B:221 , GLY B:222 , THR B:225 , ARG B:273 , PRO B:328 , PHE B:329 , GLY B:330 , ARG B:334 , CYS B:336 , GLY B:338 , HOH B:793 , HOH B:797	BINDING SITE FOR RESIDUE HEM B 603
05	AC5	SOFTWARE	THR B:61 , GLN B:333 , ARG B:334 , HOH B:809 , HOH B:860 , HOH B:940	BINDING SITE FOR RESIDUE EDO B 701
06	AC6	SOFTWARE	SER B:72 , GLY B:76 , ARG B:77 , THR B:81 , HOH B:805	BINDING SITE FOR RESIDUE EDO B 702
07	AC7	SOFTWARE	SER B:204 , LEU B:206 , PRO B:207 , HOH B:719 , HOH B:1017	BINDING SITE FOR RESIDUE EDO B 703
08	AC8	SOFTWARE	ARG B:208 , GLU B:209 , HOH B:773	BINDING SITE FOR RESIDUE EDO B 704
09	AC9	SOFTWARE	THR A:61 , GLN A:333 , ARG A:334	BINDING SITE FOR RESIDUE EDO A 705
10	BC1	SOFTWARE	PHE B:41 , ALA B:64 , THR B:65 , PHE B:66 , THR B:291	BINDING SITE FOR RESIDUE EDO B 706
11	BC2	SOFTWARE	PHE B:117 , GLU B:120 , TRP B:121 , ARG B:126 , GLU B:131 , EDO B:708 , HOH B:758	BINDING SITE FOR RESIDUE EDO B 707
12	BC3	SOFTWARE	GLU B:120 , ARG B:126 , EDO B:707	BINDING SITE FOR RESIDUE EDO B 708
13	BC4	SOFTWARE	GLU B:125 , ARG B:126 , HOH B:850 , HOH B:980 , HOH B:1003	BINDING SITE FOR RESIDUE EDO B 709
14	BC5	SOFTWARE	ALA B:154 , ALA B:157 , LEU B:158 , LEU B:161 , LEU B:219 , VAL B:220 , HIS B:223 , HOH B:819 , HOH B:871	BINDING SITE FOR RESIDUE EDO B 710
15	BC6	SOFTWARE	LEU B:133 , ALA B:134 , LEU B:158 , HIS B:223 , HOH B:796	BINDING SITE FOR RESIDUE EDO B 711
16	BC7	SOFTWARE	HOH B:1010	BINDING SITE FOR RESIDUE EDO B 712
17	BC8	SOFTWARE	GLN A:17 , SER A:170 , LEU A:172	BINDING SITE FOR RESIDUE EDO A 713
18	BC9	SOFTWARE	GLU A:59 , GLY A:60 , LYS A:88 , GLN A:333	BINDING SITE FOR RESIDUE EDO A 714
19	CC1	SOFTWARE	GLN A:67 , VAL A:371 , HOH A:730	BINDING SITE FOR RESIDUE EDO A 715
20	CC2	SOFTWARE	ARG A:104 , HOH A:743	BINDING SITE FOR RESIDUE EDO A 717
21	CC3	SOFTWARE	LEU A:133 , ALA A:134 , LEU A:158 , HIS A:223 , HOH A:751 , HOH A:785	BINDING SITE FOR RESIDUE EDO A 718
22	CC4	SOFTWARE	ARG A:240 , TRP A:243 , ARG A:246 , GLU A:313 , HOH A:847	BINDING SITE FOR RESIDUE EDO A 719

(no "SS Bond" information available for 1N97)

Asymmetric Unit

No.	Residues
1	Pro A:201	-	Pro A:202
2	Pro B:201	-	Pro B:202

(no "SAP(SNP)/Variant" information available for 1N97)

(no "PROSITE Motif" information available for 1N97)

(no "Exon" information available for 1N97)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:385
 aligned with Q746J6_THET2 | Q746J6 from UniProtKB/TrEMBL  Length:389

    Alignment length:385
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380     
         Q746J6_THET2     1 MKRLSLREAWPYLKDLQQDPLAVLLAWGRAHPRLFLPLPRFPLALIFDPEGVEGALLAEGTTKATFQYRALSRLTGRGLLTDWGESWKEARKALKDPFLPKNVRGYREAMEEEARAFFGEWRGEERDLDHEMLALSLRLLGRALFGKPLSPSLAEHALKALDRIMAQTRSPLALLDLAAEARFRKDRGALYREAEALIVHPPLSHLPRERALSEAVTLLVAGHETVASALTWSFLLLSHRPDWQKRVAESEEAALAAFQEALRLYPPAWILTRRLERPLLLGEDRLPPGTTLVLSPYVTQRLHFPDGEAFRPERFLEERGTPSGRYFPFGLGQRLCLGRDFALLEGPIVLRAFFRRFRLDPLPFPRVLAQVTLRPEGGLPARPRE 385
               SCOP domains d1n97a_ A: Cyp175a1                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1n97A00 A:1-385 Cytochrome p450                                                                                                                                                                                                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeee......eeee.hhhhhhhhhhh..ee..hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee...eee..eee....eeeehhhhhhhhh.........hhhhhh...................hhhhhhhhhhhhhhhhhh...........eee...eee....ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n97 A   1 MKRLSLREAWPYLKDLQQDPLAVLLAWGRAHPRLFLPLPRFPLALIFDPEGVEGALLAEGTTKATFQYRALSRLTGRGLLTDWGESWKEARKALKDPFLPKNVRGYREAMEEEARAFFGEWRGEERDLDHEMLALSLRLLGRALFGKPLSPSLAEHALKALDRIMAQTRSPLALLDLAAEARFRKDRGALYREAEALIVHPPLSHLPRERALSEAVTLLVAGHETVASALTWSFLLLSHRPDWQKRVAESEEAALAAFQEALRLYPPAWILTRRLERPLLLGEDRLPPGTTLVLSPYVTQRLHFPDGEAFRPERFLEERGTPSGRYFPFGLGQRLCLGRDFALLEGPIVLRAFFRRFRLDPLPFPRVLAQVTLRPEGGLPARPRE 385
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380

Chain B from PDB  Type:PROTEIN  Length:385
 aligned with Q746J6_THET2 | Q746J6 from UniProtKB/TrEMBL  Length:389

    Alignment length:385
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380     
         Q746J6_THET2     1 MKRLSLREAWPYLKDLQQDPLAVLLAWGRAHPRLFLPLPRFPLALIFDPEGVEGALLAEGTTKATFQYRALSRLTGRGLLTDWGESWKEARKALKDPFLPKNVRGYREAMEEEARAFFGEWRGEERDLDHEMLALSLRLLGRALFGKPLSPSLAEHALKALDRIMAQTRSPLALLDLAAEARFRKDRGALYREAEALIVHPPLSHLPRERALSEAVTLLVAGHETVASALTWSFLLLSHRPDWQKRVAESEEAALAAFQEALRLYPPAWILTRRLERPLLLGEDRLPPGTTLVLSPYVTQRLHFPDGEAFRPERFLEERGTPSGRYFPFGLGQRLCLGRDFALLEGPIVLRAFFRRFRLDPLPFPRVLAQVTLRPEGGLPARPRE 385
               SCOP domains d1n97b_ B: Cyp175a1                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 1n97B00 B:1-385 Cytochrome p450                                                                                                                                                                                                                                                                                                                                                                   CATH domains
           Pfam domains (1) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------p450-1n97B01 B:189-379                                                                                                                                                                         ------ Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------p450-1n97B02 B:189-379                                                                                                                                                                         ------ Pfam domains (2)
           Pfam domains (3) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------p450-1n97B03 B:189-379                                                                                                                                                                         ------ Pfam domains (3)
           Pfam domains (4) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------p450-1n97B04 B:189-379                                                                                                                                                                         ------ Pfam domains (4)
         Sec.struct. author .ee...............hhhhhhhhhhhhh.eeee......eeee.hhhhhhhhhhh..ee..hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee...eee..eee....eeeehhhhhhhhh.........hhhhhh...................hhhhhhhhhhhhhhhhhhhh.........eee...eee....ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n97 B   1 MKRLSLREAWPYLKDLQQDPLAVLLAWGRAHPRLFLPLPRFPLALIFDPEGVEGALLAEGTTKATFQYRALSRLTGRGLLTDWGESWKEARKALKDPFLPKNVRGYREAMEEEARAFFGEWRGEERDLDHEMLALSLRLLGRALFGKPLSPSLAEHALKALDRIMAQTRSPLALLDLAAEARFRKDRGALYREAEALIVHPPLSHLPRERALSEAVTLLVAGHETVASALTWSFLLLSHRPDWQKRVAESEEAALAAFQEALRLYPPAWILTRRLERPLLLGEDRLPPGTTLVLSPYVTQRLHFPDGEAFRPERFLEERGTPSGRYFPFGLGQRLCLGRDFALLEGPIVLRAFFRRFRLDPLPFPRVLAQVTLRPEGGLPARPRE 385
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Cytochrome P450 (480)

Superfamily: Cytochrome P450 (480)

Family: Cytochrome P450 (323)

Protein domain: Cyp175a1 (2)

Thermus thermophilus [TaxId: 274] (2)

1a	d1n97a_	A:
1b	d1n97b_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Cytochrome p450 (271)

Homologous Superfamily: Cytochrome p450 (271)

Thermus thermophilus hb27. Organism_taxid: 262724. Strain: hb27. (1)

1a	1n97A00	A:1-385
1b	1n97B00	B:1-385

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: p450] (161)

Family: p450 (161)

Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) (1)

1a	p450-1n97B01	B:189-379
1b	p450-1n97B02	B:189-379
1c	p450-1n97B03	B:189-379
1d	p450-1n97B04	B:189-379

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q746J6_THET2 | Q746J6)

molecular function
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0004497	monooxygenase activity	Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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	1n97
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Description

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Ligands, Modified Residues, Ions (3, 22)

Sites (22, 22)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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