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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CU,MO-CO DEHYDROGENASE (CODH); DITHIONITE REDUCED STATE
 
Authors :  H. Dobbek, L. Gremer, R. Kiefersauer, R. Huber, O. Meyer
Date :  08 Nov 02  (Deposition) - 18 Dec 02  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Codh, Molybdenum, Molybdopterin, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Dobbek, L. Gremer, R. Kiefersauer, R. Huber, O. Meyer
Catalysis At A Dinuclear [Cusmo(=O)Oh] Cluster In A Co Dehydrogenase Resolved At 1. 1-A Resolution
Proc. Natl. Acad. Sci. Usa V. 99 15971 2002
PubMed-ID: 12475995  |  Reference-DOI: 10.1073/PNAS.212640899

(-) Compounds

Molecule 1 - CARBON MONOXIDE DEHYDROGENASE SMALL CHAIN
    Chains: A, D
    EC Number: 1.2.99.2
    Organism Scientific: OLIGOTROPHA CARBOXIDOVORANS
    Organism Taxid: 504832
    Strain: OM5
    Synonym: CO DEHYDROGENASE SUBUNIT S
 
Molecule 2 - CARBON MONOXIDE DEHYDROGENASE LARGE CHAIN
    Chains: B, E
    EC Number: 1.2.99.2
    Organism Scientific: OLIGOTROPHA CARBOXIDOVORANS
    Organism Taxid: 504832
    Strain: OM5
    Synonym: CO DEHYDROGENASE SUBUNIT L
 
Molecule 3 - CARBON MONOXIDE DEHYDROGENASE MEDIUM CHAIN
    Chains: C, F
    EC Number: 1.2.99.2
    Organism Scientific: OLIGOTROPHA CARBOXIDOVORANS
    Organism Taxid: 504832
    Strain: OM5
    Synonym: CO DEHYDROGENASE SUBUNIT M

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 11)

Asymmetric/Biological Unit (5, 11)
No.NameCountTypeFull Name
1CUN2Ligand/IonCU(I)-S-MO(IV)(=O)OH CLUSTER
2FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3FES4Ligand/IonFE2/S2 (INORGANIC) CLUSTER
4MCN2Ligand/IonPTERIN CYTOSINE DINUCLEOTIDE
5PO41Ligand/IonPHOSPHATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:5 , HOH A:3982 , HOH A:4027 , HOH A:4087BINDING SITE FOR RESIDUE PO4 A 3001
02AC2SOFTWAREGLN A:101 , CYS A:102 , GLY A:103 , CYS A:105 , CYS A:137 , ARG A:138 , CYS A:139BINDING SITE FOR RESIDUE FES A 3907
03AC3SOFTWAREGLY A:41 , CYS A:42 , SER A:45 , CYS A:47 , GLY A:48 , CYS A:50 , CYS A:62BINDING SITE FOR RESIDUE FES A 3908
04AC4SOFTWAREGLN B:240 , GLY B:272 , ALA B:385 , TYR B:386 , ARG B:387 , CYS B:388 , SER B:389 , TYR B:568 , GLY B:569 , GLU B:763 , MCN B:3920 , HOH B:4307BINDING SITE FOR RESIDUE CUN B 3921
05AC5SOFTWAREGLN A:101 , CYS A:139 , GLY B:270 , PHE B:271 , ARG B:387 , GLN B:528 , GLY B:529 , GLN B:530 , HIS B:532 , THR B:535 , THR B:567 , TYR B:568 , GLY B:569 , SER B:570 , ARG B:571 , SER B:572 , THR B:573 , CYS B:686 , THR B:688 , ILE B:690 , ASN B:691 , ILE B:694 , ILE B:695 , GLN B:698 , LYS B:759 , GLY B:760 , VAL B:761 , GLY B:762 , GLU B:763 , CUN B:3921 , HOH B:4002BINDING SITE FOR RESIDUE MCN B 3920
06AC6SOFTWAREGLN D:101 , CYS D:102 , GLY D:103 , CYS D:105 , CYS D:137 , ARG D:138 , CYS D:139BINDING SITE FOR RESIDUE FES D 4907
07AC7SOFTWAREGLY D:41 , CYS D:42 , SER D:45 , HIS D:46 , CYS D:47 , GLY D:48 , CYS D:50 , CYS D:62BINDING SITE FOR RESIDUE FES D 4908
08AC8SOFTWAREGLN E:240 , GLY E:272 , ALA E:385 , TYR E:386 , ARG E:387 , CYS E:388 , SER E:389 , TYR E:568 , GLY E:569 , GLU E:763 , MCN E:4920 , HOH E:5292BINDING SITE FOR RESIDUE CUN E 4921
09AC9SOFTWAREGLN D:101 , CYS D:139 , GLY E:270 , PHE E:271 , ARG E:387 , GLN E:528 , GLY E:529 , GLN E:530 , HIS E:532 , THR E:535 , THR E:567 , TYR E:568 , GLY E:569 , SER E:570 , ARG E:571 , SER E:572 , THR E:573 , CYS E:686 , THR E:688 , ILE E:690 , ASN E:691 , ILE E:694 , ILE E:695 , GLN E:698 , LYS E:759 , GLY E:760 , VAL E:761 , GLY E:762 , GLU E:763 , CUN E:4921 , HOH E:5038BINDING SITE FOR RESIDUE MCN E 4920
10BC1SOFTWARESER D:45 , HIS D:46 , ARG F:29 , PRO F:30 , ALA F:32 , GLY F:33 , GLY F:34 , HIS F:35 , SER F:36 , LEU F:37 , ILE F:101 , ALA F:102 , ILE F:106 , GLY F:110 , THR F:111 , GLY F:114 , ASN F:115 , ASN F:118 , ASN F:123 , ASP F:124 , ILE F:161 , LEU F:167 , LYS F:185 , GLY F:191 , ASP F:192 , TYR F:193 , HOH F:4940 , HOH F:4944 , HOH F:4985 , HOH F:5006 , HOH F:5059 , HOH F:5153BINDING SITE FOR RESIDUE FAD F 4931
11BC2SOFTWARESER A:45 , HIS A:46 , ARG C:29 , PRO C:30 , ALA C:32 , GLY C:33 , GLY C:34 , HIS C:35 , SER C:36 , LEU C:37 , ILE C:101 , ALA C:102 , GLY C:110 , THR C:111 , GLY C:114 , ASN C:115 , ALA C:117 , ASN C:118 , ASN C:123 , ASP C:124 , LEU C:166 , LEU C:167 , LYS C:185 , GLY C:191 , ASP C:192 , TYR C:193 , HOH C:3938 , HOH C:3949 , HOH C:4003 , HOH C:4029 , HOH C:4056 , HOH C:4073 , HOH C:4205BINDING SITE FOR RESIDUE FAD C 3932

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1N61)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Phe B:428 -Pro B:429
2Ala B:492 -Gly B:493
3Met B:791 -Pro B:792
4Phe E:428 -Pro E:429
5Ala E:492 -Gly E:493
6Met E:791 -Pro E:792

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1N61)

(-) PROSITE Motifs  (2, 4)

Asymmetric/Biological Unit (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FAD_PCMHPS51387 PCMH-type FAD-binding domain profile.DCMM_OLICO1-177
 		  2C:1-177
F:1-177
22FE2S_FER_2PS51085 2Fe-2S ferredoxin-type iron-sulfur binding domain profile.DCMS_OLICO4-80
 		  2A:4-80
D:4-80

(-) Exons   (0, 0)

(no "Exon" information available for 1N61)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:161
 aligned with DCMS_OLICO | P19921 from UniProtKB/Swiss-Prot  Length:166

    Alignment length:161
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162 
           DCMS_OLICO     3 KAHIELTINGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGMSVKSCTMFAVQANGASITTIEGMAAPDGTLSALQEGFRMMHGLQCGYCTPGMIMRSHRLLQENPSPTEAEIRFGIGGNLCRCTGYQNIVKAIQYAAAKINGVPFEE 163
               SCOP domains d1n61a2 A:3-81                                                                 d1n61a1 A:82-163 Carbon monoxide (CO) dehydrogenase iron-sulfur protein, C-domain  SCOP domains
               CATH domains 1n61A01 A:3-79  [code=3.10.20.30, no name defined]                           1n61A02 A:80-161  [code=1.10.150.120, no name defined]                            -- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeeeeee....hhhhhhhhh..................eeee..eeee.hhhhhhhhh..eeehhhhh.......hhhhhhhhhh.......hhhhhhhhhhhhhhhh...hhhhhhhhh.........hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -2FE2S_FER_2  PDB: A:4-80 UniProt: 4-80                                       ----------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n61 A   3 KAHIELTINGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGMSVKSCTMFAVQANGASITTIEGMAAPDGTLSALQEGFRMMHGLQCGYCTPGMIMRSHRLLQENPSPTEAEIRFGIGGNLCRCTGYQNIVKAIQYAAAKINGVPFEE 163
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162 


Chain B from PDB  Type:PROTEIN  Length:804
 aligned with DCML_OLICO | P19919 from UniProtKB/Swiss-Prot  Length:809

    Alignment length:804
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       775       785       795       805    
           DCML_OLICO     6 TVEPTSAERAEKLQGMGCKRKRVEDIRFTQGKGNYVDDVKLPGMLFGDFVRSSHAHARIKSIDTSKAKALPGVFAVLTAADLKPLNLHYMPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVLVDPFKAMEPDAPLLREDIKDKMTGAHGARKHHNHIFRWEIGDKEGTDATFAKAEVVSKDMFTYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFGNKVGAYSGYVCAVVASIVLGVPVKWVEDRMENLSTTSFARDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLAVDGVYTNKASGGVAYRCSFRVTEAVYAIERAIETLAQRLEMDSADLRIKNFIQPEQFPYMAPLGWEYDSGNYPLAMKKAMDTVGYHQLRAEQKAKQEAFKRGETREIMGIGISFFTEIVGAGPSKNCDILGVSMFDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQIIATELGIPADDIMIEEGNTDTAPYGLGTYGSRSTPTAGAATAVAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGLPEKFKTMKELAWASYNSPPPNLEPGLEAVNYYDPPNMTYPFGAYFCIMDIDVDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTEAFAVAMGQEIRYDEQGNVLGASFMDFFLPTAVETPKWETDYTVTPSPHHPIGAKGVGESPHVGGVPCFSNAVNDAYAFLNAGHIQMPHDAWRLWKVGEQLGLHV 809
               SCOP domains d1n61b1 B:6-146 Carbon monoxide (CO) dehydrogenase molybdoprotein, N-domain                                                                  d1n61b2 B:147-809 Carbon monoxide (CO) dehydrogenase molybdoprotein                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ----1n61B01 B:10-144  [code=3.90.1170.50, no name defined]                                                                                 1n61B02 B:145-212,B:310-386 Aldehyde Oxidoreductase; domain 4       1n61B05 B:213-309 Aldehyde Oxidoreductase; domain 4                                              1n61B02 B:145-212,B:310-386 Aldehyde Oxidoreductase; domain 4                ---1n61B04 B:390-489,B:656-809 Aldehyde Oxidoreductase; domain 4                                       1n61B03 B:490-655 Aldehyde Oxidoreductase; domain 4                                                                                                                   1n61B04 B:390-489,B:656-809 Aldehyde Oxidoreductase; domain 4                                                                                              CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhh.........hhhhhh.....hhhhh.....eeeeeee.....eeeeeeehhhhhhh..eeeeehhhhhhhhh..eee.....eee.....ee.....eeeeeee.hhhhhhhhhhhheeeeee.....hhhhh........hhhhh...ee..ee.....eeeeeeeehhhhhhhhhhhh.eeeeeeeee...........eeeeeee....eeeeee...hhhhhhhhhhhhhh.hhh.eeee..............hhhhhhhhhhhhhhh..eeee.hhhhhhhhh.ee..eeeeeeeee.....eeeeeeeeeee................hhhhh........eeeeeeee......ee.......hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhh.ee.....ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee...........ee..ee..eeeeeee.....eeeee.......hhhhhhhhhhhhhhh.hhh.eeee....................hhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eee...eeee..eeeeeeehhhhhhhhhhh.........eeeeee........eeeeeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh...ee.....ee..................eeee................hhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1n61 B   6 TVEPTSAERAEKLQGMGCKRKRVEDIRFTQGKGNYVDDVKLPGMLFGDFVRSSHAHARIKSIDTSKAKALPGVFAVLTAADLKPLNLHYMPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVLVDPFKAMEPDAPLLREDIKDKMTGAHGARKHHNHIFRWEIGDKEGTDATFAKAEVVSKDMFTYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFGNKVGAYSGYVCAVVASIVLGVPVKWVEDRMENLSTTSFARDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLAVDGVYTNKASGGVAYRCSFRVTEAVYAIERAIETLAQRLEMDSADLRIKNFIQPEQFPYMAPLGWEYDSGNYPLAMKKAMDTVGYHQLRAEQKAKQEAFKRGETREIMGIGISFFTEIVGAGPSKNCDILGVSMFDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQIIATELGIPADDIMIEEGNTDTAPYGLGTYGSRSTPTAGAATAVAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGLPEKFKTMKELAWASYNSPPPNLEPGLEAVNYYDPPNMTYPFGAYFCIMDIDVDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTEAFAVAMGQEIRYDEQGNVLGASFMDFFLPTAVETPKWETDYTVTPSPHHPIGAKGVGESPHVGGVPCFSNAVNDAYAFLNAGHIQMPHDAWRLWKVGEQLGLHV 809
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       775       785       795       805    


Chain C from PDB  Type:PROTEIN  Length:287
 aligned with DCMM_OLICO | P19920 from UniProtKB/Swiss-Prot  Length:288

    Alignment length:287
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       
           DCMM_OLICO     1 MIPGSFDYHRPKSIADAVALLTKLGEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGIREEGTDVVIGAMTTQHALIGSDFLAAKLPIIRETSLLIADPQIRYMGTIGGNAANGDPGNDMPALMQCLGAAYELTGPEGARIVAARDYYQGAYFTAIEPGELLTAIRIPVPPTGHGYAYEKLKRKIGDYATAAAAVVLTMSGGKCVTASIGLTNVANTPLWAEEAGKVLVGTALDKPALDKAVALAEAITAPASDGRGPAEYRTKMAGVMLRRAVERAKARAK 287
               SCOP domains d1n61c2 C:1-177 Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain                                                                                               d1n61c1 C:178-287 Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain                           SCOP domains
               CATH domains 1n61C01 C:1-54                                        -----1n61C03 C:60-174  [code=3.30.465.10, no name defined]                                                              -----1n61C02 C:180-284  [code=3.30.390.50, no name defined]                                                   --- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee...hhhhhhhhhhhhh..eeee....hhhhhhhh......eeee...hhhhh.eeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.....hhhhhhhhhh.eeeeee..eeeeee....eee..ee......eeeeeeee......eeeeeee.........eeeeeeeeee..eeeeeeeeee......eehhhhhhhhh....hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE FAD_PCMH  PDB: C:1-177 UniProt: 1-177                                                                                                                                            -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n61 C   1 MIPGSFDYHRPKSIADAVALLTKLGEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGIREEGTDVVIGAMTTQHALIGSDFLAAKLPIIRETSLLIADPQIRYMGTIGGNAANGDPGNDMPALMQCLGAAYELTGPEGARIVAARDYYQGAYFTAIEPGELLTAIRIPVPPTGHGYAYEKLKRKIGDYATAAAAVVLTMSGGKCVTASIGLTNVANTPLWAEEAGKVLVGTALDKPALDKAVALAEAITAPASDGRGPAEYRTKMAGVMLRRAVERAKARAK 287
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       


Chain D from PDB  Type:PROTEIN  Length:158
 aligned with DCMS_OLICO | P19921 from UniProtKB/Swiss-Prot  Length:166

    Alignment length:158
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152        
           DCMS_OLICO     3 KAHIELTINGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGMSVKSCTMFAVQANGASITTIEGMAAPDGTLSALQEGFRMMHGLQCGYCTPGMIMRSHRLLQENPSPTEAEIRFGIGGNLCRCTGYQNIVKAIQYAAAKINGVP 160
               SCOP domains d1n61d2 D:3-81                                                                 d1n61d1 D:82-160                                                                SCOP domains
               CATH domains 1n61D01 D:3-79  [code=3.10.20.30, no name defined]                           1n61D02 D:80-160  [code=1.10.150.120, no name defined]                            CATH domains
           Pfam domains (1) -----Fer2-1n61D01 D:8-75                                                 Fer2_2-1n61D03 D:76-151                                                     --------- Pfam domains (1)
           Pfam domains (2) -----Fer2-1n61D02 D:8-75                                                 Fer2_2-1n61D04 D:76-151                                                     --------- Pfam domains (2)
         Sec.struct. author .eeeeeee..eeeeeee....hhhhhhhh...................eeee..eeee.hhhhhhhhh..eeehhhhh.......hhhhhhhhhh.......hhhhhhhhhhhhhhhh...hhhhhhhhh.........hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -2FE2S_FER_2  PDB: D:4-80 UniProt: 4-80                                       -------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n61 D   3 KAHIELTINGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGMSVKSCTMFAVQANGASITTIEGMAAPDGTLSALQEGFRMMHGLQCGYCTPGMIMRSHRLLQENPSPTEAEIRFGIGGNLCRCTGYQNIVKAIQYAAAKINGVP 160
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152        


Chain E from PDB  Type:PROTEIN  Length:795
 aligned with DCML_OLICO | P19919 from UniProtKB/Swiss-Prot  Length:809

    Alignment length:795
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804     
           DCML_OLICO    15 AEKLQGMGCKRKRVEDIRFTQGKGNYVDDVKLPGMLFGDFVRSSHAHARIKSIDTSKAKALPGVFAVLTAADLKPLNLHYMPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVLVDPFKAMEPDAPLLREDIKDKMTGAHGARKHHNHIFRWEIGDKEGTDATFAKAEVVSKDMFTYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFGNKVGAYSGYVCAVVASIVLGVPVKWVEDRMENLSTTSFARDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLAVDGVYTNKASGGVAYRCSFRVTEAVYAIERAIETLAQRLEMDSADLRIKNFIQPEQFPYMAPLGWEYDSGNYPLAMKKAMDTVGYHQLRAEQKAKQEAFKRGETREIMGIGISFFTEIVGAGPSKNCDILGVSMFDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQIIATELGIPADDIMIEEGNTDTAPYGLGTYGSRSTPTAGAATAVAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGLPEKFKTMKELAWASYNSPPPNLEPGLEAVNYYDPPNMTYPFGAYFCIMDIDVDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTEAFAVAMGQEIRYDEQGNVLGASFMDFFLPTAVETPKWETDYTVTPSPHHPIGAKGVGESPHVGGVPCFSNAVNDAYAFLNAGHIQMPHDAWRLWKVGEQLGLHV 809
               SCOP domains d1n61e1 E:15-146 Carbon monoxide (CO) dehydrogenase molybdoprotein, N-domain                                                        d1n61e2 E:147-809 Carbon monoxide (CO) dehydrogenase molybdoprotein                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1n61E01 E:15-144  [code=3.90.1170.50, no name defined]                                                                            1n61E02 E:145-212,E:310-386 Aldehyde Oxidoreductase; domain 4       1n61E05 E:213-309 Aldehyde Oxidoreductase; domain 4                                              1n61E02 E:145-212,E:310-386 Aldehyde Oxidoreductase; domain 4                ---1n61E04 E:390-489,E:656-809 Aldehyde Oxidoreductase; domain 4                                       1n61E03 E:490-655 Aldehyde Oxidoreductase; domain 4                                                                                                                   1n61E04 E:390-489,E:656-809 Aldehyde Oxidoreductase; domain 4                                                                                              CATH domains
           Pfam domains (1) --------------------Ald_Xan_dh_C-1n61E03 E:35-144                                                                                 --------Ald_Xan_dh_C2-1n61E01 E:153-740                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             --------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) --------------------Ald_Xan_dh_C-1n61E04 E:35-144                                                                                 --------Ald_Xan_dh_C2-1n61E02 E:153-740                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             --------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author ..............hhhhhh.....hhhhh.....eeeeeee.....eeeeeeehhhhhh...eeeeehhhhhhhhh..eee.....eee.....ee.....eeeeeee.hhhhhhhhhhhheeeeee.....hhhhh...........................eeeeeeeehhhhhhhhhhhh.eeeeeeeee...........eeeeeee....eeeeee...hhhhhhhhhhhhhh.hhh.eeee..............hhhhhhhhhhhhhhh..eeee.hhhhhhhhh.ee..eeeeeeeee.....eeeeeeeeeee................hhhhh........eeeeeeee......ee.......hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhh.ee.....ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeeee...........ee..ee..eeeeeee.....eeeee.......hhhhhhhhhhhhhhh.hhh.eeee....................hhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eee...eeee..eeeeeeehhhhhhhhhhh.........eeeeee........eeeeeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh...ee.....ee..................eeee................hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n61 E  15 AEKLQGMGCKRKRVEDIRFTQGKGNYVDDVKLPGMLFGDFVRSSHAHARIKSIDTSKAKALPGVFAVLTAADLKPLNLHYMPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVLVDPFKAMEPDAPLLREDIKDKMTGAHGARKHHNHIFRWEIGDKEGTDATFAKAEVVSKDMFTYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFGNKVGAYSGYVCAVVASIVLGVPVKWVEDRMENLSTTSFARDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLAVDGVYTNKASGGVAYRCSFRVTEAVYAIERAIETLAQRLEMDSADLRIKNFIQPEQFPYMAPLGWEYDSGNYPLAMKKAMDTVGYHQLRAEQKAKQEAFKRGETREIMGIGISFFTEIVGAGPSKNCDILGVSMFDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQIIATELGIPADDIMIEEGNTDTAPYGLGTYGSRSTPTAGAATAVAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGLPEKFKTMKELAWASYNSPPPNLEPGLEAVNYYDPPNMTYPFGAYFCIMDIDVDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTEAFAVAMGQEIRYDEQGNVLGASFMDFFLPTAVETPKWETDYTVTPSPHHPIGAKGVGESPHVGGVPCFSNAVNDAYAFLNAGHIQMPHDAWRLWKVGEQLGLHV 809
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804     


Chain F from PDB  Type:PROTEIN  Length:286
 aligned with DCMM_OLICO | P19920 from UniProtKB/Swiss-Prot  Length:288

    Alignment length:286
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280      
           DCMM_OLICO     1 MIPGSFDYHRPKSIADAVALLTKLGEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGIREEGTDVVIGAMTTQHALIGSDFLAAKLPIIRETSLLIADPQIRYMGTIGGNAANGDPGNDMPALMQCLGAAYELTGPEGARIVAARDYYQGAYFTAIEPGELLTAIRIPVPPTGHGYAYEKLKRKIGDYATAAAAVVLTMSGGKCVTASIGLTNVANTPLWAEEAGKVLVGTALDKPALDKAVALAEAITAPASDGRGPAEYRTKMAGVMLRRAVERAKARA 286
               SCOP domains d1n61f2 F:1-177 Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain                                                                                               d1n61f1 F:178-286 Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain                          SCOP domains
               CATH domains 1n61F01 F:1-54                                        -----1n61F03 F:60-174  [code=3.30.465.10, no name defined]                                                              -----1n61F02 F:180-284  [code=3.30.390.50, no name defined]                                                   -- CATH domains
           Pfam domains (1) ---FAD_binding_5-1n61F01 F:4-175                                                                                                                                               -----CO_deh_flav_C-1n61F03 F:181-282                                                                       ---- Pfam domains (1)
           Pfam domains (2) ---FAD_binding_5-1n61F02 F:4-175                                                                                                                                               -----CO_deh_flav_C-1n61F04 F:181-282                                                                       ---- Pfam domains (2)
         Sec.struct. author ......eee...hhhhhhhhhhhhh..eeee....hhhhhhhh......eeee...hhhhh.eeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.....hhhhhhhhhh.eeeeee..eeeeee....eee..ee......eeeeeeee......eeeeeee.........eeeeeeeeee..eeeeeeeeee......eehhhhhhhhh....hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE FAD_PCMH  PDB: F:1-177 UniProt: 1-177                                                                                                                                            ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n61 F   1 MIPGSFDYHRPKSIADAVALLTKLGEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGIREEGTDVVIGAMTTQHALIGSDFLAAKLPIIRETSLLIADPQIRYMGTIGGNAANGDPGNDMPALMQCLGAAYELTGPEGARIVAARDYYQGAYFTAIEPGELLTAIRIPVPPTGHGYAYEKLKRKIGDYATAAAAVVLTMSGGKCVTASIGLTNVANTPLWAEEAGKVLVGTALDKPALDKAVALAEAITAPASDGRGPAEYRTKMAGVMLRRAVERAKARA 286
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (6, 12)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Fold: alpha/beta-Hammerhead (191)
(-)
Fold: beta-Grasp (ubiquitin-like) (1032)
(-)
Fold: CO dehydrogenase flavoprotein C-domain-like (111)
(-)
Fold: FAD-binding/transporter-associated domain-like (99)
(-)
Fold: Molybdenum cofactor-binding domain (44)

(-) CATH Domains  (7, 20)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 2-Layer Sandwich (8480)
(-)
Architecture: Alpha-Beta Complex (3881)
(-)
Architecture: Roll (3276)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (6, 12)

Asymmetric/Biological Unit
(-)
Clan: FAD_PCMH (53)
(-)
Clan: Fer2 (69)
(-)
Clan: no clan defined [family: Ald_Xan_dh_C2] (24)
(-)
Clan: no clan defined [family: Ald_Xan_dh_C] (24)
(-)
Clan: no clan defined [family: CO_deh_flav_C] (22)

(-) Gene Ontology  (12, 19)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,D   (DCMS_OLICO | P19921)
molecular function
    GO:0051537    2 iron, 2 sulfur cluster binding    Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0018492    carbon-monoxide dehydrogenase (acceptor) activity    Catalysis of the reaction: CO + H2O + acceptor = CO2 + reduced acceptor.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Chain B,E   (DCML_OLICO | P19919)
molecular function
    GO:0018492    carbon-monoxide dehydrogenase (acceptor) activity    Catalysis of the reaction: CO + H2O + acceptor = CO2 + reduced acceptor.
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0030151    molybdenum ion binding    Interacting selectively and non-covalently with molybdenum (Mo) ions.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Chain C,F   (DCMM_OLICO | P19920)
molecular function
    GO:0018492    carbon-monoxide dehydrogenase (acceptor) activity    Catalysis of the reaction: CO + H2O + acceptor = CO2 + reduced acceptor.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016614    oxidoreductase activity, acting on CH-OH group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  1.2.99.2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DCML_OLICO | P19919: 1n5w 1n60 1n62 1n63 1zxi
        DCMM_OLICO | P19920: 1n5w 1n60 1n62 1n63 1zxi
        DCMS_OLICO | P19921: 1n5w 1n60 1n62 1n63 1zxi

(-) Related Entries Specified in the PDB File

1n5w OXIDIZED STATE
1n60 CN-INACTIVATED STATE
1n62 NBIC-BOUND STATE
1n63 CRYSTAL STRUCTURE OF THE MO,CU CO DEHYDROGENASE