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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CU,MO-CO DEHYDROGENASE (CODH); CYANIDE-INACTIVATED FORM
 
Authors :  H. Dobbek, L. Gremer, R. Kiefersauer, R. Huber, O. Meyer
Date :  08 Nov 02  (Deposition) - 18 Dec 02  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.19
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Codh, Molybdenum, Molybdopterin, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Dobbek, L. Gremer, R. Kiefersauer, R. Huber, O. Meyer
Catalysis At A Dinuclear [Cusmo(=O)Oh] Cluster In A Co Dehydrogenase Resolved At 1. 1-A Resolution
Proc. Natl. Acad. Sci. Usa V. 99 15971 2002
PubMed-ID: 12475995  |  Reference-DOI: 10.1073/PNAS.212640899

(-) Compounds

Molecule 1 - CARBON MONOXIDE DEHYDROGENASE SMALL CHAIN
    Chains: A, D
    EC Number: 1.2.99.2
    Organism Scientific: OLIGOTROPHA CARBOXIDOVORANS
    Organism Taxid: 504832
    Strain: OM5
    Synonym: CO DEHYDROGENASE SUBUNIT S
 
Molecule 2 - CARBON MONOXIDE DEHYDROGENASE LARGE CHAIN
    Chains: B, E
    EC Number: 1.2.99.2
    Organism Scientific: OLIGOTROPHA CARBOXIDOVORANS
    Organism Taxid: 504832
    Strain: OM5
    Synonym: CO DEHYDROGENASE SUBUNIT L
 
Molecule 3 - CARBON MONOXIDE DEHYDROGENASE MEDIUM CHAIN
    Chains: C, F
    EC Number: 1.2.99.2
    Organism Scientific: OLIGOTROPHA CARBOXIDOVORANS
    Organism Taxid: 504832
    Strain: OM5
    Synonym: CO DEHYDROGENASE SUBUNIT M

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 12)

Asymmetric/Biological Unit (5, 12)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2FES4Ligand/IonFE2/S2 (INORGANIC) CLUSTER
3MCN2Ligand/IonPTERIN CYTOSINE DINUCLEOTIDE
4OMO2Ligand/IonMO(VI)(=O)(OH)2 CLUSTER
5PO42Ligand/IonPHOSPHATE ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:5 , HOH A:4984 , HOH A:5045 , HOH A:5082 , HOH A:5088BINDING SITE FOR RESIDUE PO4 A 4001
02AC2SOFTWARELYS B:165 , ARG E:175 , LYS E:176 , HOH E:6356 , HOH E:6818 , HOH E:6860 , HOH E:6921BINDING SITE FOR RESIDUE PO4 E 5002
03AC3SOFTWAREGLN A:101 , CYS A:102 , GLY A:103 , CYS A:105 , CYS A:137 , ARG A:138 , CYS A:139BINDING SITE FOR RESIDUE FES A 4907
04AC4SOFTWAREILE A:40 , GLY A:41 , CYS A:42 , SER A:45 , HIS A:46 , CYS A:47 , GLY A:48 , CYS A:50 , CYS A:62BINDING SITE FOR RESIDUE FES A 4908
05AC5SOFTWAREGLN B:240 , PHE B:271 , GLY B:272 , ALA B:385 , TYR B:386 , ARG B:387 , TYR B:568 , GLY B:569 , GLU B:763 , MCN B:4920 , HOH B:5346 , HOH B:5764BINDING SITE FOR RESIDUE OMO B 4921
06AC6SOFTWAREGLN A:101 , CYS A:139 , GLY B:270 , PHE B:271 , ARG B:387 , GLN B:528 , GLY B:529 , GLN B:530 , HIS B:532 , THR B:535 , THR B:567 , TYR B:568 , GLY B:569 , SER B:570 , ARG B:571 , SER B:572 , THR B:573 , CYS B:686 , THR B:688 , ILE B:690 , ASN B:691 , ILE B:694 , ILE B:695 , GLN B:698 , LYS B:759 , GLY B:760 , VAL B:761 , GLY B:762 , GLU B:763 , OMO B:4921 , HOH B:4928 , HOH B:4968 , HOH B:5000BINDING SITE FOR RESIDUE MCN B 4920
07AC7SOFTWAREGLN D:101 , CYS D:102 , GLY D:103 , CYS D:105 , CYS D:137 , ARG D:138 , CYS D:139BINDING SITE FOR RESIDUE FES D 5907
08AC8SOFTWAREGLY D:41 , CYS D:42 , SER D:45 , HIS D:46 , CYS D:47 , GLY D:48 , CYS D:50 , CYS D:62BINDING SITE FOR RESIDUE FES D 5908
09AC9SOFTWARESER D:45 , HIS D:46 , ARG F:29 , PRO F:30 , ALA F:32 , GLY F:33 , GLY F:34 , HIS F:35 , SER F:36 , LEU F:37 , ILE F:101 , ALA F:102 , ILE F:106 , GLY F:110 , THR F:111 , GLY F:114 , ASN F:115 , ASN F:118 , ASN F:123 , ASP F:124 , ILE F:161 , LEU F:166 , LEU F:167 , LYS F:185 , GLY F:191 , ASP F:192 , TYR F:193 , HOH F:5940 , HOH F:5944 , HOH F:5987 , HOH F:6010 , HOH F:6157 , HOH F:6173BINDING SITE FOR RESIDUE FAD F 5931
10BC1SOFTWARESER A:45 , HIS A:46 , ARG C:29 , PRO C:30 , ALA C:32 , GLY C:33 , GLY C:34 , HIS C:35 , SER C:36 , LEU C:37 , ALA C:74 , ILE C:101 , ALA C:102 , GLY C:110 , THR C:111 , GLY C:114 , ASN C:115 , ASN C:118 , ASN C:123 , ASP C:124 , LEU C:167 , LYS C:185 , GLY C:191 , ASP C:192 , TYR C:193 , HOH C:4938 , HOH C:4950 , HOH C:5003 , HOH C:5023 , HOH C:5066 , HOH C:5104BINDING SITE FOR RESIDUE FAD C 4932
11BC2SOFTWAREGLN E:240 , PHE E:271 , GLY E:272 , ALA E:385 , TYR E:386 , ARG E:387 , TYR E:568 , GLY E:569 , GLU E:763 , MCN E:5920 , HOH E:6317 , HOH E:6732BINDING SITE FOR RESIDUE OMO E 5921
12BC3SOFTWAREGLN D:101 , CYS D:139 , GLY E:270 , PHE E:271 , ARG E:387 , GLN E:528 , GLY E:529 , GLN E:530 , HIS E:532 , THR E:535 , THR E:567 , TYR E:568 , GLY E:569 , SER E:570 , ARG E:571 , SER E:572 , THR E:573 , CYS E:686 , THR E:688 , ILE E:690 , ASN E:691 , ILE E:694 , ILE E:695 , GLN E:698 , LYS E:759 , GLY E:760 , VAL E:761 , GLY E:762 , GLU E:763 , OMO E:5921 , HOH E:5928 , HOH E:6038BINDING SITE FOR RESIDUE MCN E 5920

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1N60)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Phe B:428 -Pro B:429
2Ala B:492 -Gly B:493
3Met B:791 -Pro B:792
4Phe E:428 -Pro E:429
5Ala E:492 -Gly E:493
6Met E:791 -Pro E:792

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1N60)

(-) PROSITE Motifs  (2, 4)

Asymmetric/Biological Unit (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FAD_PCMHPS51387 PCMH-type FAD-binding domain profile.DCMM_OLICO1-177
 		  2C:1-177
F:1-177
22FE2S_FER_2PS51085 2Fe-2S ferredoxin-type iron-sulfur binding domain profile.DCMS_OLICO4-80
 		  2A:4-80
D:4-80

(-) Exons   (0, 0)

(no "Exon" information available for 1N60)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:161
 aligned with DCMS_OLICO | P19921 from UniProtKB/Swiss-Prot  Length:166

    Alignment length:161
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162 
           DCMS_OLICO     3 KAHIELTINGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGMSVKSCTMFAVQANGASITTIEGMAAPDGTLSALQEGFRMMHGLQCGYCTPGMIMRSHRLLQENPSPTEAEIRFGIGGNLCRCTGYQNIVKAIQYAAAKINGVPFEE 163
               SCOP domains d1n60a2 A:3-81                                                                 d1n60a1 A:82-163 Carbon monoxide (CO) dehydrogenase iron-sulfur protein, C-domain  SCOP domains
               CATH domains 1n60A01 A:3-79  [code=3.10.20.30, no name defined]                           1n60A02 A:80-161  [code=1.10.150.120, no name defined]                            -- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeeeeee....hhhhhhhhh..................eeee..eeee.hhhhhhhhh..eeehhhhh.......hhhhhhhhhh.......hhhhhhhhhhhhhhhh...hhhhhhhhh.........hhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -2FE2S_FER_2  PDB: A:4-80 UniProt: 4-80                                       ----------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n60 A   3 KAHIELTINGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGMSVKSCTMFAVQANGASITTIEGMAAPDGTLSALQEGFRMMHGLQCGYCTPGMIMRSHRLLQENPSPTEAEIRFGIGGNLCRCTGYQNIVKAIQYAAAKINGVPFEE 163
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162 


Chain B from PDB  Type:PROTEIN  Length:803
 aligned with DCML_OLICO | P19919 from UniProtKB/Swiss-Prot  Length:809

    Alignment length:803
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806   
           DCML_OLICO     7 VEPTSAERAEKLQGMGCKRKRVEDIRFTQGKGNYVDDVKLPGMLFGDFVRSSHAHARIKSIDTSKAKALPGVFAVLTAADLKPLNLHYMPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVLVDPFKAMEPDAPLLREDIKDKMTGAHGARKHHNHIFRWEIGDKEGTDATFAKAEVVSKDMFTYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFGNKVGAYSGYVCAVVASIVLGVPVKWVEDRMENLSTTSFARDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLAVDGVYTNKASGGVAYRCSFRVTEAVYAIERAIETLAQRLEMDSADLRIKNFIQPEQFPYMAPLGWEYDSGNYPLAMKKAMDTVGYHQLRAEQKAKQEAFKRGETREIMGIGISFFTEIVGAGPSKNCDILGVSMFDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQIIATELGIPADDIMIEEGNTDTAPYGLGTYGSRSTPTAGAATAVAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGLPEKFKTMKELAWASYNSPPPNLEPGLEAVNYYDPPNMTYPFGAYFCIMDIDVDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTEAFAVAMGQEIRYDEQGNVLGASFMDFFLPTAVETPKWETDYTVTPSPHHPIGAKGVGESPHVGGVPCFSNAVNDAYAFLNAGHIQMPHDAWRLWKVGEQLGLHV 809
               SCOP domains d1n60b1 B:7-146 Carbon monoxide (CO) dehydrogenase molybdoprotein, N-domain                                                                 d1n60b2 B:147-809 Carbon monoxide (CO) dehydrogenase molybdoprotein                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---1n60B01 B:10-144  [code=3.90.1170.50, no name defined]                                                                                 1n60B02 B:145-212,B:310-386 Aldehyde Oxidoreductase; domain 4       1n60B05 B:213-309 Aldehyde Oxidoreductase; domain 4                                              1n60B02 B:145-212,B:310-386 Aldehyde Oxidoreductase; domain 4                ---1n60B04 B:390-489,B:656-809 Aldehyde Oxidoreductase; domain 4                                       1n60B03 B:490-655 Aldehyde Oxidoreductase; domain 4                                                                                                                   1n60B04 B:390-489,B:656-809 Aldehyde Oxidoreductase; domain 4                                                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh.........hhhhhh.....hhhhh.....eeeeeee.....eeeeeeehhhhhhh..eeeeehhhhhhhhh..eee.....eee.....ee.....eeeeeee.hhhhhhhhhhhheeeeee.....hhhhh........hhhhh...ee..ee.....eeeeeeeehhhhhhhhhhhh.eeeeeeeee...........eeeeeee....eeeeee...hhhhhhhhhhhhhh.hhh.eeee..............hhhhhhhhhhhhhhh..eeee.hhhhhhhhh.ee..eeeeeeeee.....eeeeeeeeeee................hhhhh........eeeeeeee......ee.......hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhh.ee.....ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee...........ee..ee..eeeeeee.....eeeee.......hhhhhhhhhhhhhhh.hhh.eeee....................hhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eee...eeee..eeeeeeehhhhhhhhhhh.........eeeeee........eeeeeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh...ee.....ee..................eeee................hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n60 B   7 VEPTSAERAEKLQGMGCKRKRVEDIRFTQGKGNYVDDVKLPGMLFGDFVRSSHAHARIKSIDTSKAKALPGVFAVLTAADLKPLNLHYMPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVLVDPFKAMEPDAPLLREDIKDKMTGAHGARKHHNHIFRWEIGDKEGTDATFAKAEVVSKDMFTYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFGNKVGAYSGYVCAVVASIVLGVPVKWVEDRMENLSTTSFARDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLAVDGVYTNKASGGVAYRCSFRVTEAVYAIERAIETLAQRLEMDSADLRIKNFIQPEQFPYMAPLGWEYDSGNYPLAMKKAMDTVGYHQLRAEQKAKQEAFKRGETREIMGIGISFFTEIVGAGPSKNCDILGVSMFDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQIIATELGIPADDIMIEEGNTDTAPYGLGTYGSRSTPTAGAATAVAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGLPEKFKTMKELAWASYNSPPPNLEPGLEAVNYYDPPNMTYPFGAYFCIMDIDVDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTEAFAVAMGQEIRYDEQGNVLGASFMDFFLPTAVETPKWETDYTVTPSPHHPIGAKGVGESPHVGGVPCFSNAVNDAYAFLNAGHIQMPHDAWRLWKVGEQLGLHV 809
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806   


Chain C from PDB  Type:PROTEIN  Length:286
 aligned with DCMM_OLICO | P19920 from UniProtKB/Swiss-Prot  Length:288

    Alignment length:286
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280      
           DCMM_OLICO     1 MIPGSFDYHRPKSIADAVALLTKLGEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGIREEGTDVVIGAMTTQHALIGSDFLAAKLPIIRETSLLIADPQIRYMGTIGGNAANGDPGNDMPALMQCLGAAYELTGPEGARIVAARDYYQGAYFTAIEPGELLTAIRIPVPPTGHGYAYEKLKRKIGDYATAAAAVVLTMSGGKCVTASIGLTNVANTPLWAEEAGKVLVGTALDKPALDKAVALAEAITAPASDGRGPAEYRTKMAGVMLRRAVERAKARA 286
               SCOP domains d1n60c2 C:1-177 Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain                                                                                               d1n60c1 C:178-286 Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain                          SCOP domains
               CATH domains 1n60C01 C:1-54                                        -----1n60C03 C:60-174  [code=3.30.465.10, no name defined]                                                              -----1n60C02 C:180-284  [code=3.30.390.50, no name defined]                                                   -- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee...hhhhhhhhhhhhh..eeee....hhhhhhhh......eeee...hhhhh.eeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.....hhhhhhhhhh.eeeeee..eeeeeehhhheee..ee......eeeeeeee......eeeeeee.........eeeeeeeeee..eeeeeeeeee......eehhhhhhhhh....hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE FAD_PCMH  PDB: C:1-177 UniProt: 1-177                                                                                                                                            ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n60 C   1 MIPGSFDYHRPKSIADAVALLTKLGEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGIREEGTDVVIGAMTTQHALIGSDFLAAKLPIIRETSLLIADPQIRYMGTIGGNAANGDPGNDMPALMQCLGAAYELTGPEGARIVAARDYYQGAYFTAIEPGELLTAIRIPVPPTGHGYAYEKLKRKIGDYATAAAAVVLTMSGGKCVTASIGLTNVANTPLWAEEAGKVLVGTALDKPALDKAVALAEAITAPASDGRGPAEYRTKMAGVMLRRAVERAKARA 286
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280      


Chain D from PDB  Type:PROTEIN  Length:158
 aligned with DCMS_OLICO | P19921 from UniProtKB/Swiss-Prot  Length:166

    Alignment length:158
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152        
           DCMS_OLICO     3 KAHIELTINGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGMSVKSCTMFAVQANGASITTIEGMAAPDGTLSALQEGFRMMHGLQCGYCTPGMIMRSHRLLQENPSPTEAEIRFGIGGNLCRCTGYQNIVKAIQYAAAKINGVP 160
               SCOP domains d1n60d2 D:3-81                                                                 d1n60d1 D:82-160                                                                SCOP domains
               CATH domains 1n60D01 D:3-79  [code=3.10.20.30, no name defined]                           1n60D02 D:80-160  [code=1.10.150.120, no name defined]                            CATH domains
           Pfam domains (1) -----Fer2-1n60D01 D:8-75                                                 Fer2_2-1n60D03 D:76-151                                                     --------- Pfam domains (1)
           Pfam domains (2) -----Fer2-1n60D02 D:8-75                                                 Fer2_2-1n60D04 D:76-151                                                     --------- Pfam domains (2)
         Sec.struct. author .eeeeeee..eeeeeee....hhhhhhhhh..................eeee..eeee.hhhhhhhhh..eeehhhhh.......hhhhhhhhhh.......hhhhhhhhhhhhhhhh...hhhhhhhhh.........hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -2FE2S_FER_2  PDB: D:4-80 UniProt: 4-80                                       -------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n60 D   3 KAHIELTINGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGMSVKSCTMFAVQANGASITTIEGMAAPDGTLSALQEGFRMMHGLQCGYCTPGMIMRSHRLLQENPSPTEAEIRFGIGGNLCRCTGYQNIVKAIQYAAAKINGVP 160
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152        


Chain E from PDB  Type:PROTEIN  Length:796
 aligned with DCML_OLICO | P19919 from UniProtKB/Swiss-Prot  Length:809

    Alignment length:796
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803      
           DCML_OLICO    14 RAEKLQGMGCKRKRVEDIRFTQGKGNYVDDVKLPGMLFGDFVRSSHAHARIKSIDTSKAKALPGVFAVLTAADLKPLNLHYMPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVLVDPFKAMEPDAPLLREDIKDKMTGAHGARKHHNHIFRWEIGDKEGTDATFAKAEVVSKDMFTYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFGNKVGAYSGYVCAVVASIVLGVPVKWVEDRMENLSTTSFARDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLAVDGVYTNKASGGVAYRCSFRVTEAVYAIERAIETLAQRLEMDSADLRIKNFIQPEQFPYMAPLGWEYDSGNYPLAMKKAMDTVGYHQLRAEQKAKQEAFKRGETREIMGIGISFFTEIVGAGPSKNCDILGVSMFDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQIIATELGIPADDIMIEEGNTDTAPYGLGTYGSRSTPTAGAATAVAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGLPEKFKTMKELAWASYNSPPPNLEPGLEAVNYYDPPNMTYPFGAYFCIMDIDVDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTEAFAVAMGQEIRYDEQGNVLGASFMDFFLPTAVETPKWETDYTVTPSPHHPIGAKGVGESPHVGGVPCFSNAVNDAYAFLNAGHIQMPHDAWRLWKVGEQLGLHV 809
               SCOP domains d1n60e1 E:14-146 Carbon monoxide (CO) dehydrogenase molybdoprotein, N-domain                                                         d1n60e2 E:147-809 Carbon monoxide (CO) dehydrogenase molybdoprotein                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1n60E01 E:14-144  [code=3.90.1170.50, no name defined]                                                                             1n60E02 E:145-212,E:310-386 Aldehyde Oxidoreductase; domain 4       1n60E05 E:213-309 Aldehyde Oxidoreductase; domain 4                                              1n60E02 E:145-212,E:310-386 Aldehyde Oxidoreductase; domain 4                ---1n60E04 E:390-489,E:656-809 Aldehyde Oxidoreductase; domain 4                                       1n60E03 E:490-655 Aldehyde Oxidoreductase; domain 4                                                                                                                   1n60E04 E:390-489,E:656-809 Aldehyde Oxidoreductase; domain 4                                                                                              CATH domains
           Pfam domains (1) ---------------------Ald_Xan_dh_C-1n60E03 E:35-144                                                                                 --------Ald_Xan_dh_C2-1n60E01 E:153-740                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             --------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ---------------------Ald_Xan_dh_C-1n60E04 E:35-144                                                                                 --------Ald_Xan_dh_C2-1n60E02 E:153-740                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             --------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author ...............hhhhhh.....hhhhh.....eeeeeee.....eeeeeeehhhhhhh..eeeeehhhhhhhhh..eee.....eee.....ee.....eeeeeee.hhhhhhhhhhhheeeeee.....hhhhh...........................eeeeeeeehhhhhhhhhhhh.eeeeeeeee...........eeeeeee....eeeeee...hhhhhhhhhhhhhh.hhh.eeee..............hhhhhhhhhhhhhhh..eeee.hhhhhhhhh.ee..eeeeeeeee.....eeeeeeeeeee................hhhhh........eeeeeeee......ee.......hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.hhhhh.ee.....ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeeee...........ee..ee..eeeeeee.....eeeee.......hhhhhhhhhhhhhhh.hhh.eeee....................hhhhhhhhhhhhhhhhhhhhhhhhhh.hhh.eee...eeee..eeeeeeehhhhhhhhhhh........eeeeeee........eeeeeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh...ee.....ee..................eeee................hhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n60 E  14 RAEKLQGMGCKRKRVEDIRFTQGKGNYVDDVKLPGMLFGDFVRSSHAHARIKSIDTSKAKALPGVFAVLTAADLKPLNLHYMPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPVLVDPFKAMEPDAPLLREDIKDKMTGAHGARKHHNHIFRWEIGDKEGTDATFAKAEVVSKDMFTYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIHVIAPDIGGGFGNKVGAYSGYVCAVVASIVLGVPVKWVEDRMENLSTTSFARDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLAVDGVYTNKASGGVAYRCSFRVTEAVYAIERAIETLAQRLEMDSADLRIKNFIQPEQFPYMAPLGWEYDSGNYPLAMKKAMDTVGYHQLRAEQKAKQEAFKRGETREIMGIGISFFTEIVGAGPSKNCDILGVSMFDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQIIATELGIPADDIMIEEGNTDTAPYGLGTYGSRSTPTAGAATAVAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGLPEKFKTMKELAWASYNSPPPNLEPGLEAVNYYDPPNMTYPFGAYFCIMDIDVDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTEAFAVAMGQEIRYDEQGNVLGASFMDFFLPTAVETPKWETDYTVTPSPHHPIGAKGVGESPHVGGVPCFSNAVNDAYAFLNAGHIQMPHDAWRLWKVGEQLGLHV 809
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       783       793       803      


Chain F from PDB  Type:PROTEIN  Length:286
 aligned with DCMM_OLICO | P19920 from UniProtKB/Swiss-Prot  Length:288

    Alignment length:286
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280      
           DCMM_OLICO     1 MIPGSFDYHRPKSIADAVALLTKLGEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGIREEGTDVVIGAMTTQHALIGSDFLAAKLPIIRETSLLIADPQIRYMGTIGGNAANGDPGNDMPALMQCLGAAYELTGPEGARIVAARDYYQGAYFTAIEPGELLTAIRIPVPPTGHGYAYEKLKRKIGDYATAAAAVVLTMSGGKCVTASIGLTNVANTPLWAEEAGKVLVGTALDKPALDKAVALAEAITAPASDGRGPAEYRTKMAGVMLRRAVERAKARA 286
               SCOP domains d1n60f2 F:1-177 Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain                                                                                               d1n60f1 F:178-286 Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain                          SCOP domains
               CATH domains 1n60F01 F:1-54                                        -----1n60F03 F:60-174  [code=3.30.465.10, no name defined]                                                              -----1n60F02 F:180-284  [code=3.30.390.50, no name defined]                                                   -- CATH domains
           Pfam domains (1) ---FAD_binding_5-1n60F01 F:4-175                                                                                                                                               -----CO_deh_flav_C-1n60F03 F:181-282                                                                       ---- Pfam domains (1)
           Pfam domains (2) ---FAD_binding_5-1n60F02 F:4-175                                                                                                                                               -----CO_deh_flav_C-1n60F04 F:181-282                                                                       ---- Pfam domains (2)
         Sec.struct. author ......eee...hhhhhhhhhhhhh..eeee....hhhhhhhh......eeee...hhhhh.eeee..eeeee...hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.....hhhhhhhhhh.eeeeee..eeeeee....eee..ee......eeeeeeee......eeeeeee.........eeeeeeeeee..eeeeeeeeee......eehhhhhhhhh....hhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE FAD_PCMH  PDB: F:1-177 UniProt: 1-177                                                                                                                                            ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1n60 F   1 MIPGSFDYHRPKSIADAVALLTKLGEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGIREEGTDVVIGAMTTQHALIGSDFLAAKLPIIRETSLLIADPQIRYMGTIGGNAANGDPGNDMPALMQCLGAAYELTGPEGARIVAARDYYQGAYFTAIEPGELLTAIRIPVPPTGHGYAYEKLKRKIGDYATAAAAVVLTMSGGKCVTASIGLTNVANTPLWAEEAGKVLVGTALDKPALDKAVALAEAITAPASDGRGPAEYRTKMAGVMLRRAVERAKARA 286
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (6, 12)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Fold: alpha/beta-Hammerhead (191)
(-)
Fold: beta-Grasp (ubiquitin-like) (1032)
(-)
Fold: CO dehydrogenase flavoprotein C-domain-like (111)
(-)
Fold: FAD-binding/transporter-associated domain-like (99)
(-)
Fold: Molybdenum cofactor-binding domain (44)

(-) CATH Domains  (7, 20)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 2-Layer Sandwich (8480)
(-)
Architecture: Alpha-Beta Complex (3881)
(-)
Architecture: Roll (3276)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (6, 12)

Asymmetric/Biological Unit
(-)
Clan: FAD_PCMH (53)
(-)
Clan: Fer2 (69)
(-)
Clan: no clan defined [family: Ald_Xan_dh_C2] (24)
(-)
Clan: no clan defined [family: Ald_Xan_dh_C] (24)
(-)
Clan: no clan defined [family: CO_deh_flav_C] (22)

(-) Gene Ontology  (12, 19)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,D   (DCMS_OLICO | P19921)
molecular function
    GO:0051537    2 iron, 2 sulfur cluster binding    Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0018492    carbon-monoxide dehydrogenase (acceptor) activity    Catalysis of the reaction: CO + H2O + acceptor = CO2 + reduced acceptor.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Chain B,E   (DCML_OLICO | P19919)
molecular function
    GO:0018492    carbon-monoxide dehydrogenase (acceptor) activity    Catalysis of the reaction: CO + H2O + acceptor = CO2 + reduced acceptor.
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0030151    molybdenum ion binding    Interacting selectively and non-covalently with molybdenum (Mo) ions.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Chain C,F   (DCMM_OLICO | P19920)
molecular function
    GO:0018492    carbon-monoxide dehydrogenase (acceptor) activity    Catalysis of the reaction: CO + H2O + acceptor = CO2 + reduced acceptor.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016614    oxidoreductase activity, acting on CH-OH group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DCML_OLICO | P19919: 1n5w 1n61 1n62 1n63 1zxi
        DCMM_OLICO | P19920: 1n5w 1n61 1n62 1n63 1zxi
        DCMS_OLICO | P19921: 1n5w 1n61 1n62 1n63 1zxi

(-) Related Entries Specified in the PDB File

1n5w OXIDIZED STATE
1n61 DITHIONITE-RED. STATE
1n62 NBIC-BOUND STATE
1n63 CRYSTAL STRUCTURE OF THE MO,CU CO DEHYDROGENASE