molecular function |
| GO:0000340 | | RNA 7-methylguanosine cap binding | | Interacting selectively and non-covalently with the 7-methylguanosine group added cotranscriptionally to the 5' end of RNA molecules transcribed by polymerase II. |
| GO:0003723 | | RNA binding | | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
| GO:0000339 | | RNA cap binding | | Interacting selectively and non-covalently with a 7-methylguanosine (m7G) group or derivative located at the 5' end of an RNA molecule. |
| GO:0003729 | | mRNA binding | | Interacting selectively and non-covalently with messenger RNA (mRNA), an intermediate molecule between DNA and protein. mRNA includes UTR and coding sequences, but does not contain introns. |
| GO:0003676 | | nucleic acid binding | | Interacting selectively and non-covalently with any nucleic acid. |
| GO:0000166 | | nucleotide binding | | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. |
| GO:0005515 | | protein binding | | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
| GO:0017069 | | snRNA binding | | Interacting selectively and non-covalently with a small nuclear RNA (snRNA). |
biological process |
| GO:0006370 | | 7-methylguanosine mRNA capping | | Addition of the 7-methylguanosine cap to the 5' end of a nascent messenger RNA transcript. |
| GO:0006405 | | RNA export from nucleus | | The directed movement of RNA from the nucleus to the cytoplasm. |
| GO:0008380 | | RNA splicing | | The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. |
| GO:0008543 | | fibroblast growth factor receptor signaling pathway | | The series of molecular signals generated as a consequence of a fibroblast growth factor receptor binding to one of its physiological ligands. |
| GO:0010467 | | gene expression | | The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form. |
| GO:0031047 | | gene silencing by RNA | | Any process in which RNA molecules inactivate expression of target genes. |
| GO:0008334 | | histone mRNA metabolic process | | The chemical reactions and pathways involving an mRNA encoding a histone. |
| GO:0031124 | | mRNA 3'-end processing | | Any process involved in forming the mature 3' end of an mRNA molecule. |
| GO:0045292 | | mRNA cis splicing, via spliceosome | | The joining together, after removal of an intervening sequence composed of one or more introns, of two segments of the same RNA molecule via spliceosomal catalysis to produce an mRNA composed only of exon sequences that all came from the same primary transcript. |
| GO:0006406 | | mRNA export from nucleus | | The directed movement of mRNA from the nucleus to the cytoplasm. |
| GO:0006397 | | mRNA processing | | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. |
| GO:0000398 | | mRNA splicing, via spliceosome | | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. |
| GO:0051028 | | mRNA transport | | The directed movement of mRNA, messenger ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
| GO:0051168 | | nuclear export | | The directed movement of substances out of the nucleus. |
| GO:0000184 | | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | | The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins. |
| GO:0046833 | | positive regulation of RNA export from nucleus | | Any process that activates or increases the frequency, rate or extent of directed movement of RNA from the nucleus into the cytoplasm. |
| GO:0031442 | | positive regulation of mRNA 3'-end processing | | Any process that activates or increases the frequency, rate or extent of mRNA 3'-end processing. |
| GO:0098789 | | pre-mRNA cleavage required for polyadenylation | | The targeted, endonucleolytic cleavage of a pre-mRNA, required for polyadenylation of the 3' end. This cleavage is directed by binding sites near the 3' end of the mRNA and leaves a 3' hydoxyl end which then becomes a target for adenylation. |
| GO:1900363 | | regulation of mRNA polyadenylation | | Any process that modulates the frequency, rate or extent of mRNA polyadenylation. |
| GO:0006417 | | regulation of translation | | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA. |
| GO:0006446 | | regulation of translational initiation | | Any process that modulates the frequency, rate or extent of translational initiation. |
| GO:0006408 | | snRNA export from nucleus | | The directed movement of snRNA from the nucleus to the cytoplasm. |
| GO:0042795 | | snRNA transcription from RNA polymerase II promoter | | The synthesis of small nuclear RNA (snRNA) from a DNA template by RNA Polymerase II (Pol II), originating at a Pol II promoter. |
| GO:0006369 | | termination of RNA polymerase II transcription | | The process in which the synthesis of an RNA molecule by RNA polymerase II using a DNA template is completed. |
| GO:0006368 | | transcription elongation from RNA polymerase II promoter | | The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II. |
| GO:0006366 | | transcription from RNA polymerase II promoter | | The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). |
| GO:0006810 | | transport | | The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein. |
cellular component |
| GO:0005737 | | cytoplasm | | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. |
| GO:0005829 | | cytosol | | The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. |
| GO:0005845 | | mRNA cap binding complex | | Any protein complex that binds to an mRNA cap at any time in the lifetime of the mRNA. |
| GO:0005846 | | nuclear cap binding complex | | A conserved heterodimeric protein complex that binds to the 5' terminal cap structure m7G(5')ppp(5')N of nascent eukaryotic RNA polymerase II transcripts such as pre-mRNA and U snRNA. The consists of proteins known as CBP20 and CBP80, binds to cap structures in the nucleus, and is involved in pre-mRNA splicing, 3'-end formation, and RNA nuclear export. |
| GO:0005654 | | nucleoplasm | | That part of the nuclear content other than the chromosomes or the nucleolus. |
| GO:0005634 | | nucleus | | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |