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(-) Description

Title :  CRYSTAL STRUCTURE OF ELONGATION FACTOR 2
 
Authors :  R. Joergensen, P. A. Ortiz, A. Carr-Schmid, P. Nissen, T. G. Kinzy, G. R. Andersen
Date :  15 Oct 02  (Deposition) - 27 Nov 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.85
Chains :  Asym. Unit :  C,D
Biol. Unit 1:  C  (1x)
Biol. Unit 2:  D  (1x)
Keywords :  G-Protein Cis-Proline, Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Joergensen, P. A. Ortiz, A. Carr-Schmid, P. Nissen, T. G. Kinzy, G. R. Andersen
Two Crystal Structures Demonstrate Large Conformational Changes In The Eukaryotic Ribosomal Translocase.
Nat. Struct. Biol. V. 10 379 2003
PubMed-ID: 12692531  |  Reference-DOI: 10.1038/NSB923
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ELONGATION FACTOR 2
    Chains: C, D
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Synonym: EF-2

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : CD
Biological Unit 1 (1x): C 
Biological Unit 2 (1x):  D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1N0V)

(-) Sites  (0, 0)

(no "Site" information available for 1N0V)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1N0V)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly C:637 -Pro C:638
2Gly D:637 -Pro D:638

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1N0V)

(-) PROSITE Motifs  (1, 2)

Asymmetric Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1G_TR_1PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature.EF2_YEAST58-73
 		  2C:67-73
D:67-73
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1G_TR_1PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature.EF2_YEAST58-73
 		  1C:67-73
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1G_TR_1PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature.EF2_YEAST58-73
 		  1-
D:67-73

(-) Exons   (1, 2)

Asymmetric Unit (1, 2)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2YOR133W2YOR133W.1XV:575099-5776272529EF2_YEAST1-8428422C:2-842 (gaps)
D:2-842 (gaps)		841
841

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain C from PDB  Type:PROTEIN  Length:825
 aligned with EF2_YEAST | P32324 from UniProtKB/Swiss-Prot  Length:842

    Alignment length:841
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841 
            EF2_YEAST     2 VAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 842
               SCOP domains d1n0vc2 C:2-343 Elongation factor 2 (eEF-2), N-te                rminal (G) domain                                                                                                                                                                                                                                                                    d1n0vc1 C:344-481 Elongation factor 2 (eEF-2), domain II                                                                                  d1n0vc4 C:482-560 Elongation factor 2 (eEF-2)                                  d1n0vc3 C:561-725 Elongation factor 2 (eEF-2), domain IV                                                                                                             d1n0vc5 C:726-842 Elongation factor 2 (eEF-2)                                                                         SCOP domains
               CATH domains 1n0vC01 C:2-221,C:329-344 P-loop containing nucle                otide triphosphate hydrolases                                                                                                                              1n0vC02 C:222-328 Yeast translation eEF2 (G' domain)                                                       1n0vC01         1n0vC03 C:345-481 Translation factors                                                                                                    1n0vC04 C:482-562 Elongation Factor G (Translational Gtpase), domain 3           -----1n0vC05 C:568-721  [code=3.30.230.10, no name defined]                                                                                                    1n0vC06 C:722-842  [code=3.30.70.240, no name defined]                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh.hhh.eeeeeee.hhhhhhhhhhhhhhhhhh......----------------.......eeeeeee.hhhhhh.........eeeeeee....hhhhhhhhhhhhhh..eeeeeee.....hhhhhhhhhhhhhh..eeeeeeehhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh................eeeee....eeehhhhhhhhhhhh...hhhhhhhhh....eee....eee...ee...ee..hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhh.......eeeeeeeee......eeeeeeeee.eee...eeeee...........eeeee..eeeeee..eeeee.eee...eeeee.hhhhh...eeee..................eeeeeee.hhhhhhhhhhhhhhhhhhh...eeee.....eeeee.hhhhhhhhhhhhhhh.....eee...ee..eeee.......eeee......eeeeeeee.hhhhhhhhhh.......hhhhhhhhhhhhhh.hhhhhhheeee.......eeeee......hhhhhhhhhhhhhhhhhhh..........eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeeee..hhhhhhhhhhh...eeeeeee.....eeeeeeeee.hhh.hhhhhhhhh........eeeeeeee.........hhhhhhhhhhhhhh.......hhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------G_TR_1          ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.2  PDB: C:2-842 (gaps) UniProt: 1-842 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 Transcript 1
                 1n0v C   2 VAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAK----------------GITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 842
                                    11        21        31        41        |-         -     |  71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841 
                                                                           50               67                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       


Chain D from PDB  Type:PROTEIN  Length:825
 aligned with EF2_YEAST | P32324 from UniProtKB/Swiss-Prot  Length:842

    Alignment length:841
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841 
            EF2_YEAST     2 VAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 842
               SCOP domains d1n0vd2 D:2-343 Elongation factor 2 (eEF-2), N-te                rminal (G) domain                                                                                                                                                                                                                                                                    d1n0vd1 D:344-481 Elongation factor 2 (eEF-2), domain II                                                                                  d1n0vd4 D:482-560 Elongation factor 2 (eEF-2)                                  d1n0vd3 D:561-725 Elongation factor 2 (eEF-2), domain IV                                                                                                             d1n0vd5 D:726-842 Elongation factor 2 (eEF-2)                                                                         SCOP domains
               CATH domains 1n0vD01 D:2-221,D:325-344 P-loop containing nucle                otide triphosphate hydrolases                                                                                                                              1n0vD02 D:222-324 Yeast translation eEF2 (G' domain)                                                   1n0vD01             1n0vD03 D:345-481 Translation factors                                                                                                    1n0vD04 D:482-562 Elongation Factor G (Translational Gtpase), domain 3           -----1n0vD05 D:568-721  [code=3.30.230.10, no name defined]                                                                                                    1n0vD06 D:722-842  [code=3.30.70.240, no name defined]                                                                    CATH domains
           Pfam domains (1) ---------------GTP_EFTU-1n0vD03 D:17-344                                                                                                                                                                                                                                                                                                               ------------------------------------------------GTP_EFTU_D2-1n0vD07 D:393-470                                                 -------------------------------------------------------------------------------------------------------------------------------------EFG_IV-1n0vD05 D:604-721                                                                                              -EFG_C-1n0vD01 D:723-811                                                                  ------------------------------- Pfam domains (1)
           Pfam domains (2) ---------------GTP_EFTU-1n0vD04 D:17-344                                                                                                                                                                                                                                                                                                               ------------------------------------------------GTP_EFTU_D2-1n0vD08 D:393-470                                                 -------------------------------------------------------------------------------------------------------------------------------------EFG_IV-1n0vD06 D:604-721                                                                                              -EFG_C-1n0vD02 D:723-811                                                                  ------------------------------- Pfam domains (2)
         Sec.struct. author .eehhhhhhhhhhh...eeeeeee.hhhhhhhhhhhhhhhhhh.ee...----------------.......eeeeeee.hhhhhhh........eeeeeee....hhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhh..eeeeeee.hhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.........hhhhh.eeeee....eeeehhhhhhhhhhhh..hhhhhhhhh....eee....eee............hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhh......eeeeeeeee......eeeeeeeee.eee...eeeee...........eeeee..eeeeee..eeee..eee...eeeee.........eeee..................eeeeeee.hhhhhhhhhhhhhhhhhhh...eeee.....eeeee.hhhhhhhhhhhhhh......eee...ee..eeee.......eeee......eeeeeeee.hhhhhhhhhh.......hhhhhhhhhhhhhh.hhhhhhheeee.......eeeee......hhhhhhhhhhhhhhhhhhh..........eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeeeeeee..hhhhhhhhhhh...eeeeeee.....eeeeeeeee.hhh.hhhhhhhhhhh......eeeeeeee.........hhhhhhhhhhhhhh.......hhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------G_TR_1          ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.2  PDB: D:2-842 (gaps) UniProt: 1-842 [INCOMPLETE]                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 Transcript 1
                 1n0v D   2 VAFTVDQMRSLMDKVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAK----------------GITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLEMIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGPNYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETVESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVIDQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEPVFLVEIQCPEQAVGGIYSVLNKKRGQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDPTSKAGEIVLAARKRHGMKEEVPGWQEYYDKL 842
                                    11        21        31        41        |-         -     |  71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841 
                                                                           50               67
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (4, 10)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (6, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (4, 8)

Asymmetric Unit
(-)
Clan: EF-G_C (20)
(-)
Clan: P-loop_NTPase (1112)
(-)
Clan: S5 (103)
(-)
Clan: no clan defined [family: GTP_EFTU_D2] (39)

(-) Gene Ontology  (15, 15)

Asymmetric Unit(hide GO term definitions)
Chain C,D   (EF2_YEAST | P32324)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0019843    rRNA binding    Interacting selectively and non-covalently with ribosomal RNA.
    GO:0003746    translation elongation factor activity    Functions in chain elongation during polypeptide synthesis at the ribosome.
biological process
    GO:1990145    maintenance of translational fidelity    Suppression of the occurrence of translational errors, such as codon-anticodon mis-paring, during the process of translation of a protein using an mRNA template.
    GO:0017183    peptidyl-diphthamide biosynthetic process from peptidyl-histidine    The modification of peptidyl-histidine to 2'-(3-carboxamido-3-(trimethylammonio)propyl)-L-histidine, known as diphthamide, found in translation elongation factor EF-2. The process occurs in eukaryotes and archaea but not eubacteria.
    GO:0045901    positive regulation of translational elongation    Any process that activates or increases the frequency, rate or extent of translational elongation.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
    GO:0006414    translational elongation    The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

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    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  EF2_YEAST | P32324
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        EF2_YEAST | P32324: 1n0u 1u2r 1zm2 1zm3 1zm4 1zm9 2e1r 2npf 2p8w 2p8x 2p8y 2p8z 2zit 3b78 3b82 3b8h 3dny 4v4b 5juo 5jup 5jus 5jut 5juu

(-) Related Entries Specified in the PDB File

1fnm STRUCTURE OF EF-G
1n0u STRUCTURE OF EEF2 IN COMPLEX WITH SORDARIN