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1N0V
Asym. Unit
Info
Asym.Unit (266 KB)
Biol.Unit 1 (133 KB)
Biol.Unit 2 (133 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ELONGATION FACTOR 2
Authors
:
R. Joergensen, P. A. Ortiz, A. Carr-Schmid, P. Nissen, T. G. Kinzy, G. R. Andersen
Date
:
15 Oct 02 (Deposition) - 27 Nov 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : C,D
Biol. Unit 1: C (1x)
Biol. Unit 2: D (1x)
Keywords
:
G-Protein Cis-Proline, Translation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Joergensen, P. A. Ortiz, A. Carr-Schmid, P. Nissen, T. G. Kinzy, G. R. Andersen
Two Crystal Structures Demonstrate Large Conformational Changes In The Eukaryotic Ribosomal Translocase.
Nat. Struct. Biol. V. 10 379 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
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Sorry, no Info available
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: G_TR_1 (C:67-73,D:67-73)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_TR_1
PS00301
Translational (tr)-type guanine nucleotide-binding (G) domain signature.
EF2_YEAST
58-73
2
C:67-73
D:67-73
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Exons
(1, 2)
Info
All Exons
Exon 1.2 (C:2-842 (gaps) | D:2-842 (gaps))
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All Exon Boundaries
1: Boundary -/1.2
2: Boundary 1.2/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
YOR133W
2
YOR133W.1
XV:575099-577627
2529
EF2_YEAST
1-842
842
2
C:2-842 (gaps)
D:2-842 (gaps)
841
841
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SCOP Domains
(4, 10)
Info
All SCOP Domains
1a: SCOP_d1n0vc1 (C:344-481)
1b: SCOP_d1n0vd1 (D:344-481)
2a: SCOP_d1n0vc4 (C:482-560)
2b: SCOP_d1n0vc5 (C:726-842)
2c: SCOP_d1n0vd4 (D:482-560)
2d: SCOP_d1n0vd5 (D:726-842)
3a: SCOP_d1n0vc3 (C:561-725)
3b: SCOP_d1n0vd3 (D:561-725)
4a: SCOP_d1n0vc2 (C:2-343)
4b: SCOP_d1n0vd2 (D:2-343)
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Families
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(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Translation proteins
(218)
Family
:
Elongation factors
(77)
Protein domain
:
Elongation factor 2 (eEF-2), domain II
(13)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(13)
1a
d1n0vc1
C:344-481
1b
d1n0vd1
D:344-481
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
EF-G C-terminal domain-like
(33)
Family
:
EF-G/eEF-2 domains III and V
(24)
Protein domain
:
Elongation factor 2 (eEF-2)
(13)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(13)
2a
d1n0vc4
C:482-560
2b
d1n0vc5
C:726-842
2c
d1n0vd4
D:482-560
2d
d1n0vd5
D:726-842
Fold
:
Ribosomal protein S5 domain 2-like
(306)
Superfamily
:
Ribosomal protein S5 domain 2-like
(306)
Family
:
Translational machinery components
(150)
Protein domain
:
Elongation factor 2 (eEF-2), domain IV
(13)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(13)
3a
d1n0vc3
C:561-725
3b
d1n0vd3
D:561-725
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Elongation factor 2 (eEF-2), N-terminal (G) domain
(13)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(13)
4a
d1n0vc2
C:2-343
4b
d1n0vd2
D:2-343
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CATH Domains
(6, 12)
Info
all CATH domains
1a: CATH_1n0vC06 (C:722-842)
1b: CATH_1n0vD06 (D:722-842)
2a: CATH_1n0vC04 (C:482-562)
2b: CATH_1n0vD04 (D:482-562)
3a: CATH_1n0vC05 (C:568-721)
3b: CATH_1n0vD05 (D:568-721)
4a: CATH_1n0vC01 (C:2-221,C:329-344)
4b: CATH_1n0vD01 (D:2-221,D:325-344)
5a: CATH_1n0vC02 (C:222-328)
5b: CATH_1n0vD02 (D:222-324)
6a: CATH_1n0vC03 (C:345-481)
6b: CATH_1n0vD03 (D:345-481)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.240, no name defined]
(21)
Baker's yeast (Saccharomyces cerevisiae)
(7)
1a
1n0vC06
C:722-842
1b
1n0vD06
D:722-842
Homologous Superfamily
:
Elongation Factor G (Translational Gtpase), domain 3
(20)
Baker's yeast (Saccharomyces cerevisiae)
(7)
2a
1n0vC04
C:482-562
2b
1n0vD04
D:482-562
Topology
:
Ribosomal Protein S5; domain 2
(189)
Homologous Superfamily
:
[code=3.30.230.10, no name defined]
(170)
Baker's yeast (Saccharomyces cerevisiae)
(10)
3a
1n0vC05
C:568-721
3b
1n0vD05
D:568-721
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Baker's yeast (Saccharomyces cerevisiae)
(61)
4a
1n0vC01
C:2-221,C:329-344
4b
1n0vD01
D:2-221,D:325-344
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Yeast translation eEF2 (G' domain)
(7)
Homologous Superfamily
:
Yeast translation eEF2 (G' domain)
(7)
Baker's yeast (Saccharomyces cerevisiae)
(7)
5a
1n0vC02
C:222-328
5b
1n0vD02
D:222-324
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Translation factors
(223)
Baker's yeast (Saccharomyces cerevisiae)
(13)
6a
1n0vC03
C:345-481
6b
1n0vD03
D:345-481
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Pfam Domains
(4, 8)
Info
all PFAM domains
1a: PFAM_EFG_C_1n0vD01 (D:723-811)
1b: PFAM_EFG_C_1n0vD02 (D:723-811)
2a: PFAM_GTP_EFTU_1n0vD03 (D:17-344)
2b: PFAM_GTP_EFTU_1n0vD04 (D:17-344)
3a: PFAM_EFG_IV_1n0vD05 (D:604-721)
3b: PFAM_EFG_IV_1n0vD06 (D:604-721)
4a: PFAM_GTP_EFTU_D2_1n0vD07 (D:393-470)
4b: PFAM_GTP_EFTU_D2_1n0vD08 (D:393-470)
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Clans
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Organisms
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)
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)
Clan
:
EF-G_C
(20)
Family
:
EFG_C
(14)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(9)
1a
EFG_C-1n0vD01
D:723-811
1b
EFG_C-1n0vD02
D:723-811
Clan
:
P-loop_NTPase
(1112)
Family
:
GTP_EFTU
(39)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(11)
2a
GTP_EFTU-1n0vD03
D:17-344
2b
GTP_EFTU-1n0vD04
D:17-344
Clan
:
S5
(103)
Family
:
EFG_IV
(11)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(9)
3a
EFG_IV-1n0vD05
D:604-721
3b
EFG_IV-1n0vD06
D:604-721
Clan
:
no clan defined [family: GTP_EFTU_D2]
(39)
Family
:
GTP_EFTU_D2
(39)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(11)
4a
GTP_EFTU_D2-1n0vD07
D:393-470
4b
GTP_EFTU_D2-1n0vD08
D:393-470
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Asym.Unit (266 KB)
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