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(-) Description

Title :  PARM FROM PLASMID R1 ADP FORM
 
Authors :  F. Van Den Ent, J. Moller-Jensen, L. A. Amos, K. Gerdes, J. Lowe
Date :  30 Sep 02  (Deposition) - 28 Jan 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Parm, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Van Den Ent, J. Moller-Jensen, L. A. Amos, K. Gerdes, J. Lowe
F-Actin-Like Filaments Formed By Plasmid Segregation Protein Parm
Embo J. V. 21 6935 2002
PubMed-ID: 12486014  |  Reference-DOI: 10.1093/EMBOJ/CDF672
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PARM
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMD137
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: PROTEIN STBA, PARA LOCUS 36 KDA PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG2Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREADP A:500 , HOH A:1506 , HOH A:1507 , HOH A:1510 , HOH A:1562 , HOH A:1596BINDING SITE FOR RESIDUE MG A 1500
2AC2SOFTWAREADP B:2500 , HOH B:3503 , HOH B:3508 , HOH B:3511 , HOH B:3518 , HOH B:3541BINDING SITE FOR RESIDUE MG B 3500
3AC3SOFTWAREGLY A:8 , SER A:9 , THR A:10 , ASN A:11 , LYS A:13 , LEU A:171 , GLY A:172 , GLY A:173 , ASP A:223 , GLY A:281 , GLU A:284 , GLN A:308 , MG A:1500 , HOH A:1503 , HOH A:1506 , HOH A:1507 , HOH A:1509 , HOH A:1511 , HOH A:1540 , HOH A:1650BINDING SITE FOR RESIDUE ADP A 500
4AC4SOFTWAREGLY B:8 , SER B:9 , THR B:10 , ASN B:11 , LYS B:13 , LEU B:171 , GLY B:172 , GLY B:173 , VAL B:199 , ASP B:223 , ILE B:227 , GLY B:281 , GLU B:284 , GLN B:308 , MG B:3500 , HOH B:3502 , HOH B:3503 , HOH B:3506 , HOH B:3508 , HOH B:3510 , HOH B:3511 , HOH B:3557 , HOH B:3569 , HOH B:3612BINDING SITE FOR RESIDUE ADP B 2500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1MWM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1MWM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1MWM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1MWM)

(-) Exons   (0, 0)

(no "Exon" information available for 1MWM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:316
 aligned with PARM_ECOLX | P11904 from UniProtKB/Swiss-Prot  Length:320

    Alignment length:320
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320
           PARM_ECOLX     1 MLVFIDDGSTNIKLQWQESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPDAVVTTNIAWQYSDVNVVAVHHALLTSGLPVSEVDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAELICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIGN 320
               SCOP domains d1mwma1 A:1-157 Plasmid segregation protein ParM                                                                                                             d1mwma2 A:158-320 Plasmid segregation protein ParM                                                                                                                  SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...eeeeeee.....eeeeeee..ee.............eee....eeee......----..hhhhhhhhhhhhhhhhhhh......eeeeeeeehhhhhh......hhhhhhhhhhhh....ee......eeeeeeeeehhhhhhhhhhh......eeeeeee....eeeeeee.hhh.eeeeeee...hhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhh.hhh.ee...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mwm A   1 MLVFIDDGSTNIKLQWQESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPD----TNIAWQYSDVNVVAVHHALLTSGLPVSEVDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAELICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIGN 320
                                    10        20        30        40        50        60  |    |70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320
                                                                                         63   68                                                                                                                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:316
 aligned with PARM_ECOLX | P11904 from UniProtKB/Swiss-Prot  Length:320

    Alignment length:320
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320
           PARM_ECOLX     1 MLVFIDDGSTNIKLQWQESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPDAVVTTNIAWQYSDVNVVAVHHALLTSGLPVSEVDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAELICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIGN 320
               SCOP domains d1mwmb1 B:1-157 Plasmid segregation protein ParM                                                                                                             d1mwmb2 B:158-320 Plasmid segregation protein ParM                                                                                                                  SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) StbA-1mwmB01 B:1-318                                                                                                                                                                                                                                                                                                          -- Pfam domains (1)
           Pfam domains (2) StbA-1mwmB02 B:1-318                                                                                                                                                                                                                                                                                                          -- Pfam domains (2)
         Sec.struct. author .eeeeee...eeeeeee.....eeeeeee..ee.............eee....eeee......----..hhhhhhhhhhhhhhhhhhh......eeeeeeeehhhhhh......hhhhhhhhhhhh....ee......eeeeeeeee.hhhhhhhhhhhh....eeeeeee....eeeeeee.hhh.eeeeeee....hhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhh.hhh.ee...hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1mwm B   1 MLVFIDDGSTNIKLQWQESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQYSFDPISPD----TNIAWQYSDVNVVAVHHALLTSGLPVSEVDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVMGKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGSSYLADDIIIHRKDNNYLKQRINDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAELICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIGN 320
                                    10        20        30        40        50        60  |    |70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320
                                                                                         63   68
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1MWM)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: Actin_ATPase (173)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (PARM_ECOLX | P11904)
biological process
    GO:0030541    plasmid partitioning    Any process in which plasmids are segregated or distributed into daughter cells upon cell division.

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  1mwm
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PARM_ECOLX | P11904: 1mwk 2qu4 2zgy 2zgz 2zhc 3iku 3iky 4a61 4a62 4a6j 5aey 5ai7

(-) Related Entries Specified in the PDB File

1mwk 1MWK CONTAINS THE SAME PROTEIN, APO FORM