1MHH - JenaLib

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Title :   ANTIBODY-ANTIGEN COMPLEX

Authors :   M. Graille, E. A. Stura

Date :   20 Aug 02 (Deposition) - 14 Jan 03 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,E  (1x)
Biol. Unit 2: C,D,F  (1x)

Keywords :   Antibody-Antigen Complex, B Cell Superantigen, Immunoglobulin Binding Protein, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Graille, S. Harrison, M. P. Crump, S. C. Findlow, N. G. Housden, B. H. Muller, N. Battail-Poirot, G. Sibai, B. J. Sutton, M. J. Taussig, C. Jolivet-Reynaud, M. G. Gore, E. A. Stura
Evidence For Plasticity And Structural Mimicry At The Immunoglobulin Light Chain-Protein L Interface
J. Biol. Chem. V. 277 47500 2002
PubMed-ID: 12221088 | Reference-DOI: 10.1074/JBC.M206105200
(for further references see the PDB file header)

Molecule 1 - FAB, LIGHT CHAIN
	Chains	:	A, C
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090

Molecule 2 - FAB, HEAVY CHAIN
	Chains	:	B, D
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090

Molecule 3 - PROTEIN L DOMAIN C
	Chains	:	E, F
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PKK233-3
	Expression System Strain	:	JM103
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Mutation	:	YES
	Organism Scientific	:	FINEGOLDIA MAGNA
	Organism Taxid	:	334413
	Strain	:	ATCC 29328

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B			E
Biological Unit 2 (1x)	:			C	D		F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 4)

No.	Name	Count	Type	Full Name
1	AEA	2	Mod. Amino Acid	(2-AMINO-2-CARBAMOYL-ETHYLSULFANYL)-ACETIC ACID
2	EDO	2	Ligand/Ion	1,2-ETHANEDIOL

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	AEA	1	Mod. Amino Acid	(2-AMINO-2-CARBAMOYL-ETHYLSULFANYL)-ACETIC ACID
2	EDO	1	Ligand/Ion	1,2-ETHANEDIOL

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	AEA	1	Mod. Amino Acid	(2-AMINO-2-CARBAMOYL-ETHYLSULFANYL)-ACETIC ACID
2	EDO	1	Ligand/Ion	1,2-ETHANEDIOL

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR D:30 , SER D:33 , ASN D:52 , THR D:52A , GLU D:53	BINDING SITE FOR RESIDUE EDO D 3001
2	AC2	SOFTWARE	THR B:30 , SER B:33 , ASN B:52 , THR B:52A	BINDING SITE FOR RESIDUE EDO B 4001

Asymmetric Unit

No.	Residues
1	A:23	-	A:88
2	A:134	-	A:194
3	B:22	-	B:92
4	B:140	-	B:195
5	C:23	-	C:88
6	C:134	-	C:194
7	D:22	-	D:92
8	D:140	-	D:195

Asymmetric Unit

No.	Residues
1	Ser A:7	-	Pro A:8
2	Pro A:94	-	Pro A:95
3	Tyr A:140	-	Pro A:141
4	Phe B:146	-	Pro B:147
5	Glu B:148	-	Pro B:149
6	Trp B:188	-	Pro B:189
7	Ser C:7	-	Pro C:8
8	Pro C:94	-	Pro C:95
9	Tyr C:140	-	Pro C:141
10	Phe D:146	-	Pro D:147
11	Glu D:148	-	Pro D:149
12	Trp D:188	-	Pro D:189

(no "SAP(SNP)/Variant" information available for 1MHH)

(no "PROSITE Motif" information available for 1MHH)

(no "Exon" information available for 1MHH)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                             
               SCOP domains d1mhha1 A:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                       d1mhha2 A:108-213 Immunoglobulin light chain kappa constant domain, CL-kappa                              - SCOP domains
               CATH domains 1mhhA01 A:1-108 Immunoglobulins                                                                                   1mhhA02 A:109-211 Immunoglobulins                                                                      --- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee..........ee.eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeeee......eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..eee...eeeee.........eeeeeeeeeehhhhhh..eeeeeee.......eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1mhh A    1 DIVMSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKVLIYWASTRESGVPDRFTGRGSGTDFTLTISSVQAEDQAVYYCKQAYIPPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEx  214
                                    10        20       27C|||     34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214
                                                     27A|||||                                                                                                                                                                                        214-AEA
                                                      27B||||                                                                                                                                                                                           
                                                       27C|||                                                                                                                                                                                           
                                                        27D||                                                                                                                                                                                           
                                                         27E|                                                                                                                                                                                           
                                                          27F

Chain B from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                        
               SCOP domains d1mhhb1 B:1-113 Immunoglobulin heavy chain variable domain, VH                                                        d1mhhb2 B:114-212 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                   SCOP domains
               CATH domains 1mhhB01 B:1-113 Immunoglobulins                                                                                       1mhhB02 B:114-211 Immunoglobulins                                                               - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhh.eeeeee......eeeeee......eee.hhhh..eeeeeehhh.eeeeee...hhhhheeeeeeee............eeeee........eeeee........eeeeeeeeeee.....eeee.hhh....eee...ee....eeeeeeeeee.........eeeeeehhhheeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1mhh B    1 QIQLVQSGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNEDTATYFCARFLLRQYFDVWGAGTTVTVSSAKTTPPSVYPLAPGSAAQSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP  212
                                    10        20        30        40        50  |     59        69        79   |||  86        96    |  105       115       125     ||137       147       157       167       177       187       197       207     
                                                                              52A                            82A||               100A                            131|                                                                              
                                                                                                              82B|                                                134                                                                              
                                                                                                               82C

Chain C from PDB  Type:PROTEIN  Length:220
                                                                                                                                                                                                                                                             
               SCOP domains d1mhhc1 C:1-107 Immunoglobulin light chain kappa variable domain, VL-kappa                                       d1mhhc2 C:108-213 Immunoglobulin light chain kappa constant domain, CL-kappa                              - SCOP domains
               CATH domains 1mhhC01 C:1-108 Immunoglobulins                                                                                   1mhhC02 C:109-211 Immunoglobulins                                                                      --- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeeee....eeeeeee..........ee.eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeee......ee...eeeeee......eeeee..hhhhhh..eeeeeeeeeee.....eeeeee..eee...eeeee.........eeeeeeeeeehhhhhh..eeeeeee.......eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1mhh C    1 DIVMSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKVLIYWASTRESGVPDRFTGRGSGTDFTLTISSVQAEDQAVYYCKQAYIPPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEx  214
                                    10        20       27C|||     34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214
                                                     27A|||||                                                                                                                                                                                        214-AEA
                                                      27B||||                                                                                                                                                                                           
                                                       27C|||                                                                                                                                                                                           
                                                        27D||                                                                                                                                                                                           
                                                         27E|                                                                                                                                                                                           
                                                          27F

Chain D from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                       
               SCOP domains d1mhhd1 D:1-113 Immunoglobulin heavy chain variable domain, VH                                                        d1mhhd2 D:114-212 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                  SCOP domains
               CATH domains 1mhhD01 D:1-113 Immunoglobulins                                                                                       1mhhD02 D:114-211 Immunoglobulins                                                              - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...eee.....eeeeeeee..hhhhheeeeeee.....eeeeeee......eee.hhhh..eeeeeehhh.eeeeee...hhhhheeeeeeee............eeeee........eeeee.......eeeeeeeeeee.....eeee.hhh....eee...eee..eeeeeeeeeee.hhhhhh..eeeeeehhhheeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1mhh D    1 QIQLVQSGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNEDTATYFCARFLLRQYFDVWGAGTTVTVSSAKTTPPSVYPLAPGSANSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVP  212
                                    10        20        30        40        50  |     59        69        79   |||  86        96    |  105       115       125   ||  138       148       158       168       178       188       198       208    
                                                                              52A                            82A||               100A                          129|                                                                               
                                                                                                              82B|                                              133                                                                               
                                                                                                               82C

Chain E from PDB  Type:PROTEIN  Length:63
                                                                                                
               SCOP domains d1mhhe_ E:                                                      SCOP domains
               CATH domains 1mhhE00 E:820-882  [code=3.10.20.10, no name defined]           CATH domains
               Pfam domains --------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.....eeeeeeeehhhhhhhhhhhhhhhhhhhhh.eeeeeehhh.eeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                1mhh E  820 EVTIKVNLIFADGKIQTAEFKGTFEEATAEAYRYAALLAKVNGEWTADLEDGGNHMNIKFAGK  882
                                   829       839       849       859       869       879

Chain F from PDB  Type:PROTEIN  Length:62
                                                                                               
               SCOP domains d1mhhf_ F:                                                     SCOP domains
               CATH domains 1mhhF00 F:1820-1881  [code=3.10.20.10, no name defined]        CATH domains
               Pfam domains -------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.....eeeeeeeehhhhhhhhhhhhhhhhhhhhh.eeeeee....eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------- Transcript
                1mhh F 1820 EVTIKVNLIFADGKIQTAEFKGTFEEATAEAYRYAALLAKVNGEWTADLEDGGNHMNIKFAG 1881
                                  1829      1839      1849      1859      1869      1879

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Roll (3276)

Topology: Ubiquitin-like (UB roll) (674)

Homologous Superfamily: [code=3.10.20.10, no name defined] (72)

House mouse (Mus musculus) (6)

1a	1mhhF00	F:1820-1881
1b	1mhhE00	E:820-882

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: Immunoglobulins (2282)

House mouse (Mus musculus) (616)

2a	1mhhA02	A:109-211
2b	1mhhB02	B:114-211
2c	1mhhD02	D:114-211
2d	1mhhA01	A:1-108
2e	1mhhC01	C:1-108
2f	1mhhB01	B:1-113
2g	1mhhD01	D:1-113
2h	1mhhC02	C:109-211

(no "Pfam Domain" information available for 1MHH)

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 1MHH)

Asymmetric Unit
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	Cis Peptide Bonds
		Glu B:148 - Pro B:149	[ RasMol ]
		Glu D:148 - Pro D:149	[ RasMol ]
		Phe B:146 - Pro B:147	[ RasMol ]
		Phe D:146 - Pro D:147	[ RasMol ]
		Pro A:94 - Pro A:95	[ RasMol ]
		Pro C:94 - Pro C:95	[ RasMol ]
		Ser A:7 - Pro A:8	[ RasMol ]
		Ser C:7 - Pro C:8	[ RasMol ]
		Trp B:188 - Pro B:189	[ RasMol ]
		Trp D:188 - Pro D:189	[ RasMol ]
		Tyr A:140 - Pro A:141	[ RasMol ]
		Tyr C:140 - Pro C:141	[ RasMol ]

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	1mhh
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1hez	1HEZ CONTAINS COMPLEX BETWEEN PEPTOSTREPTOCOCCUS MAGNUS PROTEIN L AND A HUMAN ANTIBODY

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 4)

Sites (2, 2)

SS Bonds (8, 8)

Cis Peptide Bonds (12, 12)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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