PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
1MHH
Biol. Unit 2
Info
Asym.Unit (178 KB)
Biol.Unit 1 (90 KB)
Biol.Unit 2 (89 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
ANTIBODY-ANTIGEN COMPLEX
Authors
:
M. Graille, E. A. Stura
Date
:
20 Aug 02 (Deposition) - 14 Jan 03 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,E (1x)
Biol. Unit 2: C,D,F (1x)
Keywords
:
Antibody-Antigen Complex, B Cell Superantigen, Immunoglobulin Binding Protein, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Graille, S. Harrison, M. P. Crump, S. C. Findlow, N. G. Housden, B. H. Muller, N. Battail-Poirot, G. Sibai, B. J. Sutton, M. J. Taussig, C. Jolivet-Reynaud, M. G. Gore, E. A. Stura
Evidence For Plasticity And Structural Mimicry At The Immunoglobulin Light Chain-Protein L Interface
J. Biol. Chem. V. 277 47500 2002
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 2)
Info
All Hetero Components
1a: (2-AMINO-2-CARBAMOYL-ETHYLSULFANYL... (AEAa)
1b: (2-AMINO-2-CARBAMOYL-ETHYLSULFANYL... (AEAb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
AEA
1
Mod. Amino Acid
(2-AMINO-2-CARBAMOYL-ETHYLSULFANYL)-ACETIC ACID
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR D:30 , SER D:33 , ASN D:52 , THR D:52A , GLU D:53
BINDING SITE FOR RESIDUE EDO D 3001
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(5, 10)
Info
All SCOP Domains
1a: SCOP_d1mhhb2 (B:114-212)
1b: SCOP_d1mhhd2 (D:114-212)
2a: SCOP_d1mhha2 (A:108-213)
2b: SCOP_d1mhhc2 (C:108-213)
3a: SCOP_d1mhhb1 (B:1-113)
3b: SCOP_d1mhhd1 (D:1-113)
4a: SCOP_d1mhha1 (A:1-107)
4b: SCOP_d1mhhc1 (C:1-107)
5a: SCOP_d1mhhe_ (E:)
5b: SCOP_d1mhhf_ (F:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Mouse (Mus musculus) [TaxId: 10090]
(414)
1a
d1mhhb2
B:114-212
1b
d1mhhd2
D:114-212
Protein domain
:
Immunoglobulin light chain kappa constant domain, CL-kappa
(495)
Mouse (Mus musculus) [TaxId: 10090]
(345)
2a
d1mhha2
A:108-213
2b
d1mhhc2
C:108-213
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 4 [TaxId: 10090]
(34)
3a
d1mhhb1
B:1-113
3b
d1mhhd1
D:1-113
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
(46)
4a
d1mhha1
A:1-107
4b
d1mhhc1
C:1-107
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Immunoglobulin-binding domains
(65)
Family
:
Immunoglobulin-binding domains
(65)
Protein domain
:
Immunoglobulin light chain-binding domain of protein L
(12)
Peptostreptococcus magnus [TaxId: 1260]
(12)
5a
d1mhhe_
E:
5b
d1mhhf_
F:
[
close SCOP info
]
CATH Domains
(2, 10)
Info
all CATH domains
1a: CATH_1mhhF00 (F:1820-1881)
1b: CATH_1mhhE00 (E:820-882)
2a: CATH_1mhhA02 (A:109-211)
2b: CATH_1mhhB02 (B:114-211)
2c: CATH_1mhhD02 (D:114-211)
2d: CATH_1mhhA01 (A:1-108)
2e: CATH_1mhhC01 (C:1-108)
2f: CATH_1mhhB01 (B:1-113)
2g: CATH_1mhhD01 (D:1-113)
2h: CATH_1mhhC02 (C:109-211)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.10, no name defined]
(72)
House mouse (Mus musculus)
(6)
1a
1mhhF00
F:1820-1881
1b
1mhhE00
E:820-882
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
House mouse (Mus musculus)
(616)
2a
1mhhA02
A:109-211
2b
1mhhB02
B:114-211
2c
1mhhD02
D:114-211
2d
1mhhA01
A:1-108
2e
1mhhC01
C:1-108
2f
1mhhB01
B:1-113
2g
1mhhD01
D:1-113
2h
1mhhC02
C:109-211
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain C
Chain D
Chain F
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (178 KB)
Header - Asym.Unit
Biol.Unit 1 (90 KB)
Header - Biol.Unit 1
Biol.Unit 2 (89 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1MHH
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
