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(-) Description

Title :  CRYSTAL STRUCTURE OF BOVINE GAMMA-E AT 1.65 ANG RESOLUTION
 
Authors :  C. Mayer, N. Agueznay, F. Skouri-Panet, K. Prat, T. Putilina, S. Biarrotte-Sorin, A. Tardieu
Date :  26 Jul 02  (Deposition) - 05 Aug 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Gamma-Crystallin, Gamma-E, Crystal Structure, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Mayer, N. Agueznay, F. Skouri-Panet, K. Prat, T. Putilina, S. Biarrotte-Sorin, A. Tardieu
Crystal Structure Of Bovine Gamma-E
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GAMMA-E
    Chains: A
    Organism Common: CATTLE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Other Details: EXTRACTED FROM CALF EYE LENS

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1M8U)

(-) Sites  (0, 0)

(no "Site" information available for 1M8U)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1M8U)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1M8U)

(-) PROSITE Motifs  (1, 4)

Asymmetric/Biological Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CRYSTALLIN_BETA_GAMMAPS50915 Crystallins beta and gamma 'Greek key' motif profile.CRGF_BOVIN2-40
41-83
88-128
129-171		  4A:1-39
A:40-82
A:88-128
A:129-171

(-) Exons   (0, 0)

(no "Exon" information available for 1M8U)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:173
 aligned with CRGF_BOVIN | P23005 from UniProtKB/Swiss-Prot  Length:174

    Alignment length:173
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171   
           CRGF_BOVIN     2 GKITFYEDRGFQGRHYECSSDHSNLQPYFSRCNSIRVDSGCWMLYEQPNFQGPQYFLRRGDYPDYQQWMGLNDSIRSCRLIPHTGSHRLRIYEREDYRGQMVEITEDCSSLHDRFHFSEIHSFNVLEGWWVLYEMTNYRGRQYLLRPGDYRRYHDWGATNARVGSLRRAVDFY 174
               SCOP domains d1m8ua1 A:1-85 gamma-Crystallin                                                      d1m8ua2 A:87-174 gamma-Crystallin                                                        SCOP domains
               CATH domains 1m8uA01 A:1-83 Crystallins                                                         1m8uA02 A:84-174 Crystallins                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...eeeeeee...............eeeeee..eeee.hhhhh..eeee..eee.hhhhhh.......eeee.......eeeeeee...eeeeeee.................eeeeee..eeeeee...eeeeeee..eee.hhhhhh.......eeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE CRYSTALLIN_BETA_GAMMA  PDB: A:1-39     CRYSTALLIN_BETA_GAMMA  PDB: A:40-82        ----CRYSTALLIN_BETA_GAMMA  PDB: A:88-128     CRYSTALLIN_BETA_GAMMA  PDB: A:129-171      --- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1m8u A   1 GKITFYEDRGFQGRHYECSSDHSNLQPYFSRCNSIRVDSGCWMIYEQPNFQGPQYFLRRGDYPDYQQWMGLNDSIRSCRLIPHTSSHRLRIYEREDYRGQMVEITEDCSSLHERFHFSEIHSFHVLEGWWVLYEMPNYRGRQYLLRPGDYRRYHEWGAVDARVGSLRRAVDFY 174
                                    10        20        30        40        50        60        70        80    ||  91       101       111       121       131       141       151       161       171   
                                                                                                               85|                                                                                       
                                                                                                                87
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1M8U)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (CRGF_BOVIN | P23005)
molecular function
    GO:0005212    structural constituent of eye lens    The action of a molecule that contributes to the structural integrity of the lens of an eye.

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  1m8u
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CRGF_BOVIN | P23005: 1a45

(-) Related Entries Specified in the PDB File

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