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(-) Description

Title :  X-RAY STRUCTURE OF MTH1187 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TT272
 
Authors :  X. Tao, R. Khayat, D. Christendat, A. Savchenko, X. Xu, A. Edwards, C. H. Arrowsmith, L. Tong, Northeast Structural Genomics Consort (Nesg)
Date :  05 Jun 02  (Deposition) - 29 Jul 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  A,B,C,D  (1x)
Biol. Unit 6:  A (1x),B (1x),C (1x),D (1x)
Keywords :  Hypothetical Structure, Structural Genomics, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Tao, R. Khayat, D. Christendat, A. Savchenko, X. Xu, S. Goldsmith-Fischman, B. Honig, A. Edwards, C. H. Arrowsmith, L. Ton
Crystal Structures Of Mth1187 And Its Yeast Ortholog Ybl001
Proteins V. 52 478 2003
PubMed-ID: 12866058  |  Reference-DOI: 10.1002/PROT.10443

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN MTH1187
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: METHANOTHERMOBACTER THERMAUTOTROPHICUS
    Organism Taxid: 145262

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D
Biological Unit 5 (1x): ABCD
Biological Unit 6 (1x): A (1x)B (1x)C (1x)D (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 18)

Asymmetric Unit (2, 18)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
2SO46Ligand/IonSULFATE ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 3 (2, 5)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
2SO42Ligand/IonSULFATE ION
Biological Unit 4 (2, 5)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
2SO42Ligand/IonSULFATE ION
Biological Unit 5 (2, 18)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
2SO46Ligand/IonSULFATE ION
Biological Unit 6 (2, 9)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
2SO43Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:81 , ARG A:86 , SER A:94 , SER B:1017 , LEU B:1018 , SER B:1019 , HOH C:11BINDING SITE FOR RESIDUE SO4 B 161
2AC2SOFTWAREARG C:2081 , ARG C:2086 , SER C:2094 , HOH D:40 , SER D:3017 , LEU D:3018 , SER D:3019BINDING SITE FOR RESIDUE SO4 D 261
3AC3SOFTWAREHOH C:49 , SER C:2017 , LEU C:2018 , SER C:2019 , ARG C:2035 , ARG D:3081 , ARG D:3086 , SER D:3094BINDING SITE FOR RESIDUE SO4 C 361
4AC4SOFTWARESER A:17 , LEU A:18 , SER A:19 , HOH A:482 , ARG B:1081 , ARG B:1086 , SER B:1094BINDING SITE FOR RESIDUE SO4 A 461
5AC5SOFTWARETHR C:2013 , CYS C:2014 , TYR C:2021BINDING SITE FOR RESIDUE SO4 C 561
6AC6SOFTWAREHOH D:92 , CYS D:3014 , TYR D:3021BINDING SITE FOR RESIDUE SO4 D 661

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:14 -D:3014
2B:1014 -C:2014

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1LXN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1LXN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1LXN)

(-) Exons   (0, 0)

(no "Exon" information available for 1LXN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:99
 aligned with Y1187_METTH | O27255 from UniProtKB/Swiss-Prot  Length:99

    Alignment length:99
                                    10        20        30        40        50        60        70        80        90         
         Y1187_METTH      1 MITAELTVIPLGTCSTSLSSYVAAAVEALKKLNVRYEISGMGTLLEAEDLDELMEAVKAAHEAVLQAGSDRVYTTLKIDDRRDADRGLRDKVESVKEKI   99
               SCOP domains d1lxna_ A: Hypothetical protein MTH1187                                                             SCOP domains
               CATH domains -1lxnA00 A:2-99  [code=3.30.70.930, no name defined]                                                CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee.......hhhhhhhhhhhhh....eeeee..eeeeee.hhhhhhhhhhhhhhhhhhh...eeeeeeeeeee.....hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                1lxn A    1 mITAELTVIPLGTCSTSLSSYVAAAVEALKKLNVRYEISGmGTLLEAEDLDELmEAVKAAHEAVLQAGSDRVYTTLKIDDRRDADRGLRDKVESVKEKI   99
                            |       10        20        30        40|       50   |    60        70        80        90         
                            |                                      41-MSE       54-MSE                                         
                            1-MSE                                                                                              


Chain B from PDB  Type:PROTEIN  Length:99
 aligned with Y1187_METTH | O27255 from UniProtKB/Swiss-Prot  Length:99

    Alignment length:99
                                    10        20        30        40        50        60        70        80        90         
         Y1187_METTH      1 MITAELTVIPLGTCSTSLSSYVAAAVEALKKLNVRYEISGMGTLLEAEDLDELMEAVKAAHEAVLQAGSDRVYTTLKIDDRRDADRGLRDKVESVKEKI   99
               SCOP domains d1lxnb_ B: Hypothetical protein MTH1187                                                             SCOP domains
               CATH domains -1lxnB00 B:1002-1099  [code=3.30.70.930, no name defined]                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee.......hhhhhhhhhhhhhhh..eeeee..eeeeee.hhhhhhhhhhhhhhhhhhh...eeeeeeeeeee.....hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                1lxn B 1001 mITAELTVIPLGTCSTSLSSYVAAAVEALKKLNVRYEISGmGTLLEAEDLDELmEAVKAAHEAVLQAGSDRVYTTLKIDDRRDADRGLRDKVESVKEKI 1099
                            |     1010      1020      1030      1040|     1050   |  1060      1070      1080      1090         
                         1001-MSE                                1041-MSE     1054-MSE                                         


Chain C from PDB  Type:PROTEIN  Length:99
 aligned with Y1187_METTH | O27255 from UniProtKB/Swiss-Prot  Length:99

    Alignment length:99
                                    10        20        30        40        50        60        70        80        90         
         Y1187_METTH      1 MITAELTVIPLGTCSTSLSSYVAAAVEALKKLNVRYEISGMGTLLEAEDLDELMEAVKAAHEAVLQAGSDRVYTTLKIDDRRDADRGLRDKVESVKEKI   99
               SCOP domains d1lxnc_ C: Hypothetical protein MTH1187                                                             SCOP domains
               CATH domains -1lxnC00 C:2002-2099  [code=3.30.70.930, no name defined]                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee.......hhhhhhhhhhhhh...eeeeee..eeeeee.hhhhhhhhhhhhhhhhhhh...eeeeeeeeeee.....hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                1lxn C 2001 mITAELTVIPLGTCSTSLSSYVAAAVEALKKLNVRYEISGmGTLLEAEDLDELmEAVKAAHEAVLQAGSDRVYTTLKIDDRRDADRGLRDKVESVKEKI 2099
                            |     2010      2020      2030      2040|     2050   |  2060      2070      2080      2090         
                         2001-MSE                                2041-MSE     2054-MSE                                         


Chain D from PDB  Type:PROTEIN  Length:99
 aligned with Y1187_METTH | O27255 from UniProtKB/Swiss-Prot  Length:99

    Alignment length:99
                                    10        20        30        40        50        60        70        80        90         
         Y1187_METTH      1 MITAELTVIPLGTCSTSLSSYVAAAVEALKKLNVRYEISGMGTLLEAEDLDELMEAVKAAHEAVLQAGSDRVYTTLKIDDRRDADRGLRDKVESVKEKI   99
               SCOP domains d1lxnd_ D: Hypothetical protein MTH1187                                                             SCOP domains
               CATH domains -1lxnD00 D:3002-3099  [code=3.30.70.930, no name defined]                                           CATH domains
           Pfam domains (1) ---DUF77-1lxnD01 D:3004-3096                                                                    --- Pfam domains (1)
           Pfam domains (2) ---DUF77-1lxnD02 D:3004-3096                                                                    --- Pfam domains (2)
           Pfam domains (3) ---DUF77-1lxnD03 D:3004-3096                                                                    --- Pfam domains (3)
           Pfam domains (4) ---DUF77-1lxnD04 D:3004-3096                                                                    --- Pfam domains (4)
         Sec.struct. author .eeeeeeeee.......hhhhhhhhhhhhhhh..eeeee..eeeeee.hhhhhhhhhhhhhhhhhhh...eeeeeeeeeee.....hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                1lxn D 3001 mITAELTVIPLGTCSTSLSSYVAAAVEALKKLNVRYEISGmGTLLEAEDLDELmEAVKAAHEAVLQAGSDRVYTTLKIDDRRDADRGLRDKVESVKEKI 3099
                            |     3010      3020      3030      3040|     3050   |  3060      3070      3080      3090         
                         3001-MSE                                3041-MSE     3054-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: MTH1187-YkoF (6)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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(-) Related Entries Specified in the PDB File

1lxj X-RAY STRUCTURE OF YBL001C NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET YTYST72 RELATED ID: TT272 RELATED DB: TARGETDB