1LVU - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF CALF SPLEEN PURINE NUCLEOSIDE PHOSPHORYLASE IN A NEW SPACE GROUP WITH FULL TRIMER IN THE ASYMMETRIC UNIT

Authors :   A. Bzowska, G. Koellner, B. Wielgus-Kutrowska, A. Stroh, G. Raszewski, A. Holy, T. Steiner, J. Frank

Date :   29 May 02 (Deposition) - 02 Sep 03 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.05

Chains :   Asym./Biol. Unit : A,B,C,D,E,F

Keywords :   Pnp, Purie Nucleoside Phosphorylase, Pentosyltransferase, New Space Group, 2, 6-Diaminopurine Multisubstrate Analogue Inhibitor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Bzowska, G. Koellner, B. Wielgus-Kutrowska, A. Stroh, G. Raszewski, A. Holy, T. Steiner, J. Frank
Crystal Structure Of Calf Spleen Purine Nucleoside Phosphorylase With Two Full Trimers In The Asymmetric Unit: Important Implications For The Mechanism Of Catalysis
J. Mol. Biol. V. 342 1015 2004
PubMed-ID: 15342253 | Reference-DOI: 10.1016/J.JMB.2004.07.017
(for further references see the PDB file header)

Molecule 1 - PURINE NUCLEOSIDE PHOSPHORYLASE
	Chains	:	A, B, C, D, E, F
	EC Number	:	2.4.2.1
	Organism Common	:	CATTLE
	Organism Scientific	:	BOS TAURUS
	Organism Taxid	:	9913
	Tissue	:	SPLEEN

		1	2	3	4	5	6
Asymmetric/Biological Unit	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 16)

No.	Name	Count	Type	Full Name
1	9PP	6	Ligand/Ion	2,6-DIAMINO-(S)-9-[2-(PHOSPHONOMETHOXY)PROPYL]PURINE
2	CA	10	Ligand/Ion	CALCIUM ION

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:51 , GLU A:58 , HOH A:8018 , HOH A:8022 , HOH A:8094 , GLU D:58	BINDING SITE FOR RESIDUE CA A 8001
02	AC2	SOFTWARE	GLU A:58 , SER D:51 , GLU D:58 , HOH D:8044 , HOH D:8058 , HOH D:8154	BINDING SITE FOR RESIDUE CA D 8002
03	AC3	SOFTWARE	GLU B:1058 , HOH B:8073 , HOH F:204 , HOH F:306 , SER F:2051 , GLU F:2058	BINDING SITE FOR RESIDUE CA F 8003
04	AC4	SOFTWARE	SER B:1051 , GLU B:1058 , HOH B:8022 , HOH B:8052 , HOH B:8071 , GLU F:2058	BINDING SITE FOR RESIDUE CA B 8004
05	AC5	SOFTWARE	HOH C:117 , HOH C:355 , SER C:2051 , GLU C:2058 , GLU E:1058 , HOH E:8072	BINDING SITE FOR RESIDUE CA C 8005
06	AC6	SOFTWARE	GLU C:2058 , SER E:1051 , GLU E:1058 , HOH E:8042 , HOH E:8059 , HOH E:8090	BINDING SITE FOR RESIDUE CA E 8006
07	AC7	SOFTWARE	ASP B:1215 , HOH B:8043 , HOH B:8244 , HOH B:8337 , GLU D:250	BINDING SITE FOR RESIDUE CA B 8007
08	AC8	SOFTWARE	GLU C:2250 , HOH F:76 , HOH F:582 , ASN F:2121 , ASP F:2215	BINDING SITE FOR RESIDUE CA F 8008
09	AC9	SOFTWARE	GLU A:8 , HOH A:8082 , HOH A:8091 , GLU E:1008 , HOH E:8032 , HOH E:8274	BINDING SITE FOR RESIDUE CA A 8009
10	BC1	SOFTWARE	GLU B:1008 , HOH B:8037 , HOH B:8131 , GLU D:8 , HOH D:8033 , HOH D:8131	BINDING SITE FOR RESIDUE CA B 8010
11	BC2	SOFTWARE	GLY A:32 , SER A:33 , HIS A:86 , ASN A:115 , ALA A:116 , GLY A:118 , LEU A:195 , PHE A:200 , GLU A:201 , VAL A:217 , GLY A:218 , MET A:219 , SER A:220 , ASN A:243 , HOH A:8034 , HOH A:8048 , HOH A:8070 , HOH A:8092 , HOH A:8131 , HOH A:8162	BINDING SITE FOR RESIDUE 9PP A 6100
12	BC3	SOFTWARE	GLY B:1032 , SER B:1033 , ARG B:1084 , HIS B:1086 , ASN B:1115 , ALA B:1116 , ALA B:1117 , GLY B:1118 , LEU B:1195 , PHE B:1200 , GLU B:1201 , VAL B:1217 , GLY B:1218 , MET B:1219 , SER B:1220 , ASN B:1243 , HOH B:8012 , HOH B:8057 , HOH B:8092 , HOH B:8105 , HOH B:8119	BINDING SITE FOR RESIDUE 9PP B 6200
13	BC4	SOFTWARE	HOH C:134 , HOH C:326 , HOH C:483 , HOH C:707 , HOH C:1653 , GLY C:2032 , SER C:2033 , ARG C:2084 , HIS C:2086 , ASN C:2115 , ALA C:2116 , ALA C:2117 , GLY C:2118 , PHE C:2200 , GLU C:2201 , VAL C:2217 , GLY C:2218 , MET C:2219 , SER C:2220 , ASN C:2243	BINDING SITE FOR RESIDUE 9PP C 6300
14	BC5	SOFTWARE	GLY D:32 , SER D:33 , HIS D:86 , ASN D:115 , ALA D:116 , ALA D:117 , GLY D:118 , LEU D:195 , PHE D:200 , GLU D:201 , VAL D:217 , GLY D:218 , MET D:219 , SER D:220 , ASN D:243 , HOH D:8019 , HOH D:8024 , HOH D:8056 , HOH D:8083 , HOH D:8123	BINDING SITE FOR RESIDUE 9PP D 6400
15	BC6	SOFTWARE	GLY E:1032 , SER E:1033 , ARG E:1084 , HIS E:1086 , ASN E:1115 , ALA E:1116 , ALA E:1117 , GLY E:1118 , LEU E:1195 , PHE E:1200 , GLU E:1201 , VAL E:1217 , GLY E:1218 , MET E:1219 , SER E:1220 , ASN E:1243 , HOH E:8016 , HOH E:8022 , HOH E:8030 , HOH E:8051 , HOH E:8056 , PHE F:2159	BINDING SITE FOR RESIDUE 9PP E 6500
16	BC7	SOFTWARE	HOH F:157 , HOH F:276 , HOH F:279 , HOH F:860 , GLY F:2032 , SER F:2033 , HIS F:2086 , ASN F:2115 , ALA F:2116 , ALA F:2117 , GLY F:2118 , LEU F:2195 , PHE F:2200 , GLU F:2201 , VAL F:2217 , GLY F:2218 , MET F:2219 , SER F:2220 , ASN F:2243	BINDING SITE FOR RESIDUE 9PP F 6600

(no "SS Bond" information available for 1LVU)

Asymmetric/Biological Unit

No.	Residues
1	Gly A:197	-	Pro A:198
2	Gly B:1197	-	Pro B:1198
3	Gly C:2197	-	Pro C:2198
4	Gly D:197	-	Pro D:198
5	Gly E:1197	-	Pro E:1198
6	Gly F:2197	-	Pro F:2198

(no "SAP(SNP)/Variant" information available for 1LVU)

Asymmetric/Biological Unit (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PNP_MTAP_2	PS01240	Purine and other phosphorylases family 2 signature.	PNPH_BOVIN	79-120	6	A:79-120 B:1079-1120 C:2079-2120 D:79-120 E:1079-1120 F:2079-2120

Asymmetric/Biological Unit (6, 36)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSBTAT00000016346	1	ENSBTAE00000133169	chr10:26040769-26040670	100	PNPH_BOVIN	1-33	33	6	A:2-33 B:1002-1033 C:2001-2033 D:2-33 E:1002-1033 F:2001-2033	32 32 33 32 32 33
1.3	ENSBTAT00000016346	3	ENSBTAE00000420054	chr10:26038796-26038627	170	PNPH_BOVIN	33-90	58	6	A:33-90 B:1033-1090 C:2033-2090 D:33-90 E:1033-1090 F:2033-2090	58 58 58 58 58 58
1.4	ENSBTAT00000016346	4	ENSBTAE00000408817	chr10:26036665-26036562	104	PNPH_BOVIN	90-124	35	6	A:90-124 B:1090-1124 C:2090-2124 D:90-124 E:1090-1124 F:2090-2124	35 35 35 35 35 35
1.5	ENSBTAT00000016346	5	ENSBTAE00000427656	chr10:26036357-26036182	176	PNPH_BOVIN	125-183	59	6	A:125-183 B:1125-1183 C:2125-2183 D:125-183 E:1125-1183 F:2125-2183	59 59 59 59 59 59
1.6	ENSBTAT00000016346	6	ENSBTAE00000404946	chr10:26036090-26035900	191	PNPH_BOVIN	183-247	65	6	A:183-247 B:1183-1247 C:2183-2247 D:183-247 E:1183-1247 F:2183-2247	65 65 65 65 65 65
1.7	ENSBTAT00000016346	7	ENSBTAE00000133178	chr10:26035106-26034471	636	PNPH_BOVIN	247-318	72	6	A:247-284 (gaps) B:1247-1284 (gaps) C:2247-2284 (gaps) D:247-284 (gaps) E:1247-1284 (gaps) F:2247-2284 (gaps)	38 38 38 38 38 38

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:272
 aligned with PNPH_BOVIN | P55859 from UniProtKB/Swiss-Prot  Length:289

    Alignment length:283
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281   
          PNPH_BOVIN      2 ANGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIPV  284
               SCOP domains d1lvua_ A: Purine nucleoside phosphorylase, PNP                                                                                                                                                                                                                                             SCOP domains
               CATH domains 1lvuA00 A:2-284  [code=3.40.50.1580, no name defined]                                                                                                                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh.....eeeee...hhhhhh..eeeeeee.hhh.............eeeeee....eeeeee...hhhhh.hhhhhhhhhhhhhhhh..eeeeeeeeee.........eeeeeeeeehhhhh........................hhhhhhhhhhhhhhhh.....eeeeeee.......hhhhhhhhhhh...eee..hhhhhhhhhhh..eeeeeeeeeee......-----------hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------PNP_MTAP_2  PDB: A:79-120 UniProt: 79-120 -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: A:2-33           --------------------------------------------------------Exon 1.4  PDB: A:90-124            Exon 1.5  PDB: A:125-183 UniProt: 125-183                  ---------------------------------------------------------------Exon 1.7  PDB: A:247-284 (gaps)        Transcript 1 (1)
           Transcript 1 (2) -------------------------------Exon 1.3  PDB: A:33-90 UniProt: 33-90                     --------------------------------------------------------------------------------------------Exon 1.6  PDB: A:183-247 UniProt: 183-247                        ------------------------------------- Transcript 1 (2)
                1lvu A    2 QNGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGQNPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYE-----------EAGKQAAQKLEQFVSLLMASIPV  284
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241        |-         -|      271       281   
                                                                                                                                                                                                                                                                                  250         262

Chain B from PDB  Type:PROTEIN  Length:277
 aligned with PNPH_BOVIN | P55859 from UniProtKB/Swiss-Prot  Length:289

    Alignment length:283
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281   
          PNPH_BOVIN      2 ANGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIPV  284
               SCOP domains d1lvub_ B: Purine nucleoside phosphorylase, PNP                                                                                                                                                                                                                                             SCOP domains
               CATH domains 1lvuB00 B:1002-1284  [code=3.40.50.1580, no name defined]                                                                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh.......eeee....hhhhhh..eeeeeee.hhh.............eeeeee....eeeeee...hhhhh.hhhhhhhhhhhhhhh...eeeeeeeeee.........eeeeeeeeehhhhh........................hhhhhhhhhhhhhhhh.....eeeeeee.......hhhhhhhhhhh...eee..hhhhhhhhhhh..eeeeeeeeeee......------hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------PNP_MTAP_2  PDB: B:1079-1120              -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: B:1002-1033      --------------------------------------------------------Exon 1.4  PDB: B:1090-1124         Exon 1.5  PDB: B:1125-1183 UniProt: 125-183                ---------------------------------------------------------------Exon 1.7  PDB: B:1247-1284 (gaps)      Transcript 1 (1)
           Transcript 1 (2) -------------------------------Exon 1.3  PDB: B:1033-1090 UniProt: 33-90                 --------------------------------------------------------------------------------------------Exon 1.6  PDB: B:1183-1247 UniProt: 183-247                      ------------------------------------- Transcript 1 (2)
                1lvu B 1002 QNGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGQNPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYE------HEEVLEAGKQAAQKLEQFVSLLMASIPV 1284
                                  1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161      1171      1181      1191      1201      1211      1221      1231      1241        |-     |1261      1271      1281   
                                                                                                                                                                                                                                                                                 1250   1257

Chain C from PDB  Type:PROTEIN  Length:273
 aligned with PNPH_BOVIN | P55859 from UniProtKB/Swiss-Prot  Length:289

    Alignment length:284
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280    
          PNPH_BOVIN      1 MANGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIPV  284
               SCOP domains d1lvuc_ C: Purine nucleoside phosphorylase, PNP                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1lvuC00 C:2001-2284  [code=3.40.50.1580, no name defined]                                                                                                                                                                                                                                    CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhh.....eeee....hhhhhh..eeeeeee.hhh.............eeeeee....eeeeee...hhhhh.hhhhhhhhhhhhhhhh..eeeeeeeeee.........eeeeeeeeehhhhh........................hhhhhhhhhhhhhhhh.....eeeeeee.......hhhhhhhhhhh...eee..hhhhhhhhhhh..eeeeeeeeeee........-----------..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------PNP_MTAP_2  PDB: C:2079-2120              -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: C:2001-2033       --------------------------------------------------------Exon 1.4  PDB: C:2090-2124         Exon 1.5  PDB: C:2125-2183 UniProt: 125-183                ---------------------------------------------------------------Exon 1.7  PDB: C:2247-2284 (gaps)      Transcript 1 (1)
           Transcript 1 (2) --------------------------------Exon 1.3  PDB: C:2033-2090 UniProt: 33-90                 --------------------------------------------------------------------------------------------Exon 1.6  PDB: C:2183-2247 UniProt: 183-247                      ------------------------------------- Transcript 1 (2)
                1lvu C 2001 MQNGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGQNPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESQ-----------GKQAAQKLEQFVSLLMASIPV 2284
                                  2010      2020      2030      2040      2050      2060      2070      2080      2090      2100      2110      2120      2130      2140      2150      2160      2170      2180      2190      2200      2210      2220      2230      2240      2250 |       -   |  2270      2280    
                                                                                                                                                                                                                                                                                    2252        2264

Chain D from PDB  Type:PROTEIN  Length:279
 aligned with PNPH_BOVIN | P55859 from UniProtKB/Swiss-Prot  Length:289

    Alignment length:283
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281   
          PNPH_BOVIN      2 ANGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIPV  284
               SCOP domains d1lvud_ D: Purine nucleoside phosphorylase, PNP                                                                                                                                                                                                                                             SCOP domains
               CATH domains 1lvuD00 D:2-284  [code=3.40.50.1580, no name defined]                                                                                                                                                                                                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh.....eeeee...hhhhhh..eeeeeee.hhh.............eeeeee....eeeeee...hhhhh.hhhhhhhhhhhhhhhh..eeeeeeeeee.........eeeeeeeeehhhhh........................hhhhhhhhhhhhhhhh.....eeeeeee.......hhhhhhhhhhh...eee..hhhhhhhhhhh..eeeeeeeeeee........----hhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------PNP_MTAP_2  PDB: D:79-120 UniProt: 79-120 -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: D:2-33           --------------------------------------------------------Exon 1.4  PDB: D:90-124            Exon 1.5  PDB: D:125-183 UniProt: 125-183                  ---------------------------------------------------------------Exon 1.7  PDB: D:247-284 (gaps)        Transcript 1 (1)
           Transcript 1 (2) -------------------------------Exon 1.3  PDB: D:33-90 UniProt: 33-90                     --------------------------------------------------------------------------------------------Exon 1.6  PDB: D:183-247 UniProt: 183-247                        ------------------------------------- Transcript 1 (2)
                1lvu D    2 QNGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGQNPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESQ----HEEVLEAGKQAAQKLEQFVSLLMASIPV  284
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251|    | 261       271       281   
                                                                                                                                                                                                                                                                                    252  257

Chain E from PDB  Type:PROTEIN  Length:268
 aligned with PNPH_BOVIN | P55859 from UniProtKB/Swiss-Prot  Length:289

    Alignment length:283
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281   
          PNPH_BOVIN      2 ANGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIPV  284
               SCOP domains d1lvue_ E: Purine nucleoside phosphorylase, PNP                                                                                                                                                                                                                                             SCOP domains
               CATH domains 1lvuE00 E:1002-1284  [code=3.40.50.1580, no name defined]                                                                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh.....eeeee...hhhhhhhheeeeeee.hhh.............eeeeee....eeeeee...hhhhh.hhhhhhhhhhhhhhhh..eeeeeeeeee.........eeeeeeeeehhhhh........................hhhhhhhhhhhhhhhh.....eeeeeee.......hhhhhhhhhhh...eee..hhhhhhhhhhh..eeeeeeeeeee.....---------------hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------PNP_MTAP_2  PDB: E:1079-1120              -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: E:1002-1033      --------------------------------------------------------Exon 1.4  PDB: E:1090-1124         Exon 1.5  PDB: E:1125-1183 UniProt: 125-183                ---------------------------------------------------------------Exon 1.7  PDB: E:1247-1284 (gaps)      Transcript 1 (1)
           Transcript 1 (2) -------------------------------Exon 1.3  PDB: E:1033-1090 UniProt: 33-90                 --------------------------------------------------------------------------------------------Exon 1.6  PDB: E:1183-1247 UniProt: 183-247                      ------------------------------------- Transcript 1 (2)
                1lvu E 1002 QNGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGQNPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDY---------------KQAAQKLEQFVSLLMASIPV 1284
                                  1011      1021      1031      1041      1051      1061      1071      1081      1091      1101      1111      1121      1131      1141      1151      1161      1171      1181      1191      1201      1211      1221      1231      1241       | -         -   |  1271      1281   
                                                                                                                                                                                                                                                                                1249            1265

Chain F from PDB  Type:PROTEIN  Length:269
 aligned with PNPH_BOVIN | P55859 from UniProtKB/Swiss-Prot  Length:289

    Alignment length:284
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280    
          PNPH_BOVIN      1 MANGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGENPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESQGKANHEEVLEAGKQAAQKLEQFVSLLMASIPV  284
               SCOP domains d1lvuf_ F: Purine nucleoside phosphorylase, PNP                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1lvuF00 F:2001-2284  [code=3.40.50.1580, no name defined]                                                                                                                                                                                                                                    CATH domains
           Pfam domains (1) -------------------------PNP_UDP_1-1lvuF01 F:2026-2280                                                                                                                                                                                                                                  ---- Pfam domains (1)
           Pfam domains (2) -------------------------PNP_UDP_1-1lvuF02 F:2026-2280                                                                                                                                                                                                                                  ---- Pfam domains (2)
           Pfam domains (3) -------------------------PNP_UDP_1-1lvuF03 F:2026-2280                                                                                                                                                                                                                                  ---- Pfam domains (3)
           Pfam domains (4) -------------------------PNP_UDP_1-1lvuF04 F:2026-2280                                                                                                                                                                                                                                  ---- Pfam domains (4)
           Pfam domains (5) -------------------------PNP_UDP_1-1lvuF05 F:2026-2280                                                                                                                                                                                                                                  ---- Pfam domains (5)
           Pfam domains (6) -------------------------PNP_UDP_1-1lvuF06 F:2026-2280                                                                                                                                                                                                                                  ---- Pfam domains (6)
         Sec.struct. author .....hhhhhhhhhhhhhhhh.....eeeee...hhhhhhhheeeeeee.hhh.............eeeeee....eeeeee...hhhhh.hhhhhhhhhhhhhhhh..eeeeeeeeee.........eeeeeeeeehhhhh........................hhhhhhhhhhhhhhhh.....eeeeeee.......hhhhhhhhhhh...eee..hhhhhhhhhhh..eeeeeeeeeee......---------------hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------PNP_MTAP_2  PDB: F:2079-2120              -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: F:2001-2033       --------------------------------------------------------Exon 1.4  PDB: F:2090-2124         Exon 1.5  PDB: F:2125-2183 UniProt: 125-183                ---------------------------------------------------------------Exon 1.7  PDB: F:2247-2284 (gaps)      Transcript 1 (1)
           Transcript 1 (2) --------------------------------Exon 1.3  PDB: F:2033-2090 UniProt: 33-90                 --------------------------------------------------------------------------------------------Exon 1.6  PDB: F:2183-2247 UniProt: 183-247                      ------------------------------------- Transcript 1 (2)
                1lvu F 2001 MQNGYTYEDYQDTAKWLLSHTEQRPQVAVICGSGLGGLVNKLTQAQTFDYSEIPNFPESTVPGHAGRLVFGILNGRACVMMQGRFHMYEGYPFWKVTFPVRVFRLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPGFSGQNPLRGPNEERFGVRFPAMSDAYDRDMRQKAHSTWKQMGEQRELQEGTYVMLGGPNFETVAECRLLRNLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYE---------------QAAQKLEQFVSLLMASIPV 2284
                                  2010      2020      2030      2040      2050      2060      2070      2080      2090      2100      2110      2120      2130      2140      2150      2160      2170      2180      2190      2200      2210      2220      2230      2240      2250         -     |2270      2280    
                                                                                                                                                                                                                                                                                  2250            2266

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Phosphorylase/hydrolase-like (558)

Superfamily: Purine and uridine phosphorylases (283)

Family: Purine and uridine phosphorylases (224)

Protein domain: Purine nucleoside phosphorylase, PNP (93)

Cow (Bos taurus) [TaxId: 9913] (20)

1a	d1lvua_	A:
1b	d1lvub_	B:
1c	d1lvuc_	C:
1d	d1lvud_	D:
1e	d1lvue_	E:
1f	d1lvuf_	F:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.1580, no name defined] (194)

Cattle (Bos taurus) (20)

1a	1lvuE00	E:1002-1284
1b	1lvuF00	F:2001-2284
1c	1lvuA00	A:2-284
1d	1lvuC00	C:2001-2284
1e	1lvuB00	B:1002-1284
1f	1lvuD00	D:2-284

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: PUP (121)

Family: PNP_UDP_1 (121)

Bos taurus (Bovine) (11)

1a	PNP_UDP_1-1lvuF01	F:2026-2280
1b	PNP_UDP_1-1lvuF02	F:2026-2280
1c	PNP_UDP_1-1lvuF03	F:2026-2280
1d	PNP_UDP_1-1lvuF04	F:2026-2280
1e	PNP_UDP_1-1lvuF05	F:2026-2280
1f	PNP_UDP_1-1lvuF06	F:2026-2280

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D,E,F (PNPH_BOVIN | P55859)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0004731	purine-nucleoside phosphorylase activity	Catalysis of the reaction: purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016757	transferase activity, transferring glycosyl groups	Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
	GO:0016763	transferase activity, transferring pentosyl groups	Catalysis of the transfer of a pentosyl group from one compound (donor) to another (acceptor).
biological process
	GO:0006139	nucleobase-containing compound metabolic process	Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
	GO:0009116	nucleoside metabolic process	The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine).
	GO:0043101	purine-containing compound salvage	Any process that generates a purine-containing compound, any nucleobase, nucleoside, nucleotide or nucleic acid that contains a purine base, from derivatives of them without de novo synthesis.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005856	cytoskeleton	Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Gly A:197 - Pro A:198	[ RasMol ]
		Gly B:1197 - Pro B:1198	[ RasMol ]
		Gly C:2197 - Pro C:2198	[ RasMol ]
		Gly D:197 - Pro D:198	[ RasMol ]
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		Gly F:2197 - Pro F:2198	[ RasMol ]

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	1lvu
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1fxu	1FXU CONTAINS THE SAME PROTEIN COMPLEXED WITH N(7)- ACYCLOGUANOSINE INHIBITOR AND A PHOSPHATE ION
1lv8	1LV8 CONTAINS THE SAME PROTEIN AT 2.30 ANGSTROMS. THE ENZYME INHIBITOR COMPLEX USED FOR CRYSTALLIZATION WAS OBTAINED IN THE ABSENCE OF PHOSPHATE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 16)

Sites (16, 16)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 6)

Exons (6, 36)

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SCOP Domains (1, 6)

CATH Domains (1, 6)

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