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Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Title :   BIRCH POLLEN ALLERGEN BET V 1 MUTANT E45S

Authors :   M. D. Spangfort, O. Mirza, H. Ipsen, R. J. Van Neerven, M. Gajhede, J. N. Larsen

Date :   30 Apr 02 (Deposition) - 28 Oct 03 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.10

Chains :   Asym./Biol. Unit : A

Keywords :   Allergen, Pathogenesis Related Proteins (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. D. Spangfort, O. Mirza, H. Ipsen, R. J. Van Neerven, M. Gajhede, J. N. Larsen
Dominating Ige-Binding Epitope Of Bet V 1, The Major Allergen Of Birch Pollen, Characterized By X-Ray Crystallography And Site-Directed Mutagenesis.
J. Immunol. V. 171 3084 2003
PubMed-ID: 12960334
(for further references see the PDB file header)

Molecule 1 - POLLEN ALLERGEN BET V 1
	Chains	:	A
	Engineered	:	YES
	Expression System	:	PICHIA PASTORIS
	Expression System Strain	:	DH5-ALPHA
	Expression System Taxid	:	4922
	Mutation	:	YES
	Organism Common	:	EUROPEAN WHITE BIRCH
	Organism Scientific	:	BETULA PENDULA
	Organism Taxid	:	3505

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1LLT)

(no "Site" information available for 1LLT)

(no "SS Bond" information available for 1LLT)

(no "Cis Peptide Bond" information available for 1LLT)

Asymmetric/Biological Unit (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_BEV1A_BETPN_001 *	F	63	L	BEV1A_BETPN	---	---	A	L	62	L
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric/Biological Unit (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PATHOGENESIS_BETVI	PS00451	Pathogenesis-related proteins Bet v I family signature.	BEV1A_BETPN	89-121	1	A:88-120

(no "Exon" information available for 1LLT)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:159
 aligned with BEV1A_BETPN | P15494 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:159
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151         
          BEV1A_BETPN     2 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKYHTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN 160
               SCOP domains d1llta_ A: Major tree pollen allergen                                                                                                                           SCOP domains
               CATH domains 1lltA00 A:1-159  [code=3.30.530.20, no name defined]                                                                                                            CATH domains
               Pfam domains Bet_v_1-1lltA01 A:1-154                                                                                                                                   ----- Pfam domains
         Sec.struct. author .eeeeeeeeee..hhhhhhhhhh.hhhhhhhhhh.....eeeeee.......eeeee........eeeeeeeeee....eeeeeeeee.........eeeeeeeee.....eeeeeeeeee.......hhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------L------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------PATHOGENESIS_BETVI  PDB: A:88-120--------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1llt A   1 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENISGNGGPGTIKKISFPEGLPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKYHTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN 159
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Legend:		→ Mismatch	(orange background)
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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: TBP-like (289)

Superfamily: Bet v1-like (158)

Family: Pathogenesis-related protein 10 (PR10)-like (38)

Protein domain: Major tree pollen allergen (22)

White birch (Betula verrucosa), Bet v 1 [TaxId: 3505] (18)

d1llta_

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 (47)

Homologous Superfamily: [code=3.30.530.20, no name defined] (47)

European white birch (Betula pendula) (6)

1lltA00

A:1-159

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Bet_V_1_like (93)

Family: Bet_v_1 (12)

Betula pendula (European white birch) (Betula verrucosa) (2)

Bet_v_1-1lltA01

A:1-154

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (BEV1A_BETPN | P15494)

biological process
	GO:0006952	defense response	Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
	GO:0009607	response to biotic stimulus	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric/Biological Unit
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1btv	STRUCTURE OF BET V 1, NMR, 20 STRUCTURES
1bv1	BIRCH POLLEN ALLERGEN BET V 1
1fsk	COMPLEX FORMATION BETWEEN A FAB FRAGMENT OF A MONOCLONAL IGG ANTIBODY AND THE MAJOR ALLERGEN FROM BIRCH POLLEN BET V 1
1qmr	BIRCH POLLEN ALLERGEN BET V 1 MUTANT N28T, K32Q, E45S, P108G

Description

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