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(-) Description

Title :  CRYSTAL STRUCTURE OF PEROXINITRITE TREATED MAJOR BIRCH POLLEN ALLERGEN BET V 1.0101 (ISOFORM A)
 
Authors :  S. G. Kofler, C. Ackaert, H. Brandstetter
Date :  19 Jun 13  (Deposition) - 02 Jul 14  (Release) - 02 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.47
Chains :  Asym./Biol. Unit :  A
Keywords :  Immune System, Nitration (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. G. Kofler, C. Ackaert, H. Brandstetter
The Crystal Structure Of The Major Birch Pollen Allergen Bet V 1 After Nitration With Peroxinitrite
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MAJOR POLLEN ALLERGEN BET V 1-A
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET28B
    Expression System Vector Type: PLASMID
    Organism Common: EUROPEAN WHITE BIRCH
    Organism Scientific: BETULA PENDULA
    Organism Taxid: 3505
    Other Details: NITRATION OF TYR5,66,120 AND 150 TO META- NITRO-TYROSINE (NIY)
    Synonym: ALLERGEN BET V I-A, BET V 1
    Tissue: POLLEN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
2NIY4Mod. Amino AcidMETA-NITRO-TYROSINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:23 , LYS A:54 , TYR A:81 , HOH A:2012BINDING SITE FOR RESIDUE MPD A1160

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4BTZ)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:124 -Asp A:125

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 1)

Asymmetric/Biological Unit (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_BEV1A_BETPN_001 *F63LBEV1A_BETPN  ---  ---AF62L
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PATHOGENESIS_BETVIPS00451 Pathogenesis-related proteins Bet v I family signature.BEV1A_BETPN89-121  1A:88-120

(-) Exons   (0, 0)

(no "Exon" information available for 4BTZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:159
 aligned with BEV1A_BETPN | P15494 from UniProtKB/Swiss-Prot  Length:160

    Alignment length:159
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151         
          BEV1A_BETPN     2 GVFNYETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKYHTKGDHEVKAEQVKASKEMGETLLRAVESYLLAHSDAYN 160
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee..hhhhhhhhh..hhhhhhhhhh.....eeeeee.......eeeee........eeeeeeeeee....eeeeeeeee......eeeeeeeeeeee.....eeeeeeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------L------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------PATHOGENESIS_BETVI  PDB: A:88-120--------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4btz A   1 GVFNyETETTSVIPAARLFKAFILDGDNLFPKVAPQAISSVENIEGNGGPGTIKKISFPEGFPFKyVKDRVDEVDHTNFKYNYSVIEGGPIGDTLEKISNEIKIVATPDGGSILKISNKyHTKGDHEVKAEQVKASKEMGETLLRAVESyLLAHSDAYN 159
                                |   10        20        30        40        50        60     |  70        80        90       100       110       120       130       140       150         
                                |                                                           66-NIY                                               120-NIY                       150-NIY     
                                5-NIY
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4BTZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4BTZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4BTZ)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (BEV1A_BETPN | P15494)
biological process
    GO:0006952    defense response    Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack.
    GO:0009607    response to biotic stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  Cis Peptide Bonds
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  4btz
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  BEV1A_BETPN | P15494
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BEV1A_BETPN | P15494: 1b6f 1btv 1bv1 1fsk 1llt 1qmr 4a80 4a81 4a83 4a84 4a85 4a86 4a87 4a88 4a8g 4b9r 4bk6 4bk7 4bkc 4bkd 4mns 4qip 4z3l

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4BTZ)