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(-) Description

Title :  STRUCTURE AND INTERACTIONS OF PAS KINASE N-TERMINAL PAS DOMAIN: MODEL FOR INTRAMOLECULAR KINASE REGULATION
 
Authors :  C. A. Amezcua, S. M. Harper, J. Rutter, K. H. Gardner
Date :  26 Apr 02  (Deposition) - 09 Oct 02  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Pas Domain, Ligand Binding, Ligand Screening, Kinase Regulation, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. A. Amezcua, S. M. Harper, J. Rutter, K. H. Gardner
Structure And Interactions Of Pas Kinase N-Terminal Pas Domain: Model For Intramolecular Kinase Regulation.
Structure V. 10 1349 2002
PubMed-ID: 12377121  |  Reference-DOI: 10.1016/S0969-2126(02)00857-2
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PAS KINASE
    ChainsA
    EC Number2.7.1.37
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System StrainBL-21(DE3)
    Expression System Taxid469008
    FragmentPAS-A DOMAIN
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1LL8)

(-) Sites  (0, 0)

(no "Site" information available for 1LL8)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1LL8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1LL8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1LL8)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PASPS50112 PAS repeat profile.PASK_HUMAN134-190  1A:11-67

(-) Exons   (3, 3)

NMR Structure (3, 3)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2aENST000002340402aENSE00001951272chr2:242088919-24208882991PASK_HUMAN-00--
1.4ENST000002340404ENSE00001038616chr2:242082489-242082252238PASK_HUMAN1-66660--
1.5cENST000002340405cENSE00000827792chr2:242080168-242079936233PASK_HUMAN66-143781A:1-20 (gaps)27
1.6ENST000002340406ENSE00000827791chr2:242079470-242079300171PASK_HUMAN144-200571A:21-7757
1.8bENST000002340408bENSE00001801483chr2:242078209-242078069141PASK_HUMAN201-247471A:78-11437
1.9ENST000002340409ENSE00001676196chr2:242077502-242077368135PASK_HUMAN248-292450--
1.10cENST0000023404010cENSE00001684990chr2:242076679-242076419261PASK_HUMAN293-379870--
1.11bENST0000023404011bENSE00000827787chr2:242075454-242075286169PASK_HUMAN380-436570--
1.12bENST0000023404012bENSE00000827785chr2:242072445-242072289157PASK_HUMAN436-488530--
1.14bENST0000023404014bENSE00000787329chr2:242066866-2420656111256PASK_HUMAN488-9074200--
1.15ENST0000023404015ENSE00000827783chr2:242063548-242063364185PASK_HUMAN907-968620--
1.16ENST0000023404016ENSE00000787331chr2:242062314-242062147168PASK_HUMAN969-1024560--
1.17ENST0000023404017ENSE00000827781chr2:242054828-242054703126PASK_HUMAN1025-1066420--
1.18aENST0000023404018aENSE00000827780chr2:242054592-242054458135PASK_HUMAN1067-1111450--
1.19bENST0000023404019bENSE00000827778chr2:242051854-242051655200PASK_HUMAN1112-1178670--
1.21ENST0000023404021ENSE00000827777chr2:242047715-242047582134PASK_HUMAN1178-1223460--
1.22cENST0000023404022cENSE00000827776chr2:242046914-242046768147PASK_HUMAN1223-1272500--
1.23cENST0000023404023cENSE00001038619chr2:242046138-242045514625PASK_HUMAN1272-1323520--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:114
 aligned with PASK_HUMAN | Q96RG2 from UniProtKB/Swiss-Prot  Length:1323

    Alignment length:121
                                   126       136       146       156       166       176       186       196       206       216       226       236 
           PASK_HUMAN   117 GWSSPLLPAPVCNPNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIISRSGEKIPVSVWMKRMRQERRLCCVVVLEPVER 237
               SCOP domains d1ll8       a_ A: N-terminal PAS domain of Pas kinase                                                                     SCOP domains
               CATH domains 1ll8A       00 A:1-114  [code=3.30.450.20, no name defined]                                                               CATH domains
               Pfam domains --------------PAS_9-1ll8A01 A:8-114                                                                                       Pfam domains
         Sec.struct. author .....-------....eeeeee.....eeee..hhhhhhh.........hhhhhh....hhhhhhh..................eee.......eeee..ee........eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------PAS  PDB: A:11-67 UniProt: 134-190                       ----------------------------------------------- PROSITE
               Transcript 1 Exon 1.5c UniProt: 66-143  Exon 1.6  PDB: A:21-77 UniProt: 144-200                  Exon 1.8b  PDB: A:78-114 [INCOMPLETE] Transcript 1
                 1ll8 A   1 GAMDP-------EFNKAIFTVDAKTTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVVEALSEEHMEADGHAAVVFGTVVDIISRSGEKIPVSVWMKRMRQERRLCCVVVLEPVER 114
                                |    -  |     13        23        33        43        53        63        73        83        93       103       113 
                                5       6                                                                                                            

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: PAS_Fold (84)

(-) Gene Ontology  (20, 20)

NMR Structure(hide GO term definitions)
Chain A   (PASK_HUMAN | Q96RG2)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0008289    lipid binding    Interacting selectively and non-covalently with a lipid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0035091    phosphatidylinositol binding    Interacting selectively and non-covalently with any inositol-containing glycerophospholipid, i.e. phosphatidylinositol (PtdIns) and its phosphorylated derivatives.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0045719    negative regulation of glycogen biosynthetic process    Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glycogen.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0045727    positive regulation of translation    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
    GO:0046777    protein autophosphorylation    The phosphorylation by a protein of one or more of its own amino acid residues (cis-autophosphorylation), or residues on an identical protein (trans-autophosphorylation).
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:2000505    regulation of energy homeostasis    Any process that modulates the frequency, rate or extent of energy homeostasis.
    GO:0070092    regulation of glucagon secretion    Any process that modulates the frequency, rate or extent of the regulated release of glucagon.
    GO:0043576    regulation of respiratory gaseous exchange    Any process that modulates the frequency, rate or extent of the process of gaseous exchange between an organism and its environment.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        PASK_HUMAN | Q96RG23dls

(-) Related Entries Specified in the PDB File

5354