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(-) Description

Title :  CRYSTAL STRUCTURE OF PAPILLOMAVIRUS E1 HEXAMERIC HELICASE DNA-FREE FORM
 
Authors :  C. M. Sanders, O. V. Kovalevskiy, D. Sizov, A. A. Lebedev, M. N. Isupov, A. A. Antson
Date :  24 Aug 07  (Deposition) - 02 Oct 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D,E,F  (1x)
Biol. Unit 2:  G,H,I,J,K,L  (1x)
Keywords :  Aaa+ Molecular Motor, Dna Replication, Dna Translocation, Nucleotide-Binding, Dna-Binding, Replication, Early Protein, Atpase, Nucleus, Helicase, Hydrolase, Atp-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. M. Sanders, O. V. Kovalevskiy, D. Sizov, A. A. Lebedev, M. N. Isupov, A. A. Antson
Papillomavirus E1 Helicase Assembly Maintains An Asymmetric State In The Absence Of Dna And Nucleotide Cofactors.
Nucleic Acids Res. V. 35 6451 2007
PubMed-ID: 17881379  |  Reference-DOI: 10.1093/NAR/GKM705

(-) Compounds

Molecule 1 - REPLICATION PROTEIN E1
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    EC Number: 3.6.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET11C
    Fragment: HELICASE DOMAIN, RESIDUES 301-605
    Organism Scientific: BOVINE PAPILLOMAVIRUS TYPE 1
    Organism Taxid: 10559
    Strain: BPV-1
    Synonym: ATP-DEPENDENT HELICASE E1, E1 HELICASE

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABCDEF      
Biological Unit 2 (1x):       GHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 24)

Asymmetric Unit (2, 24)
No.NameCountTypeFull Name
1MG6Ligand/IonMAGNESIUM ION
2PO418Ligand/IonPHOSPHATE ION
Biological Unit 1 (1, 9)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2PO49Ligand/IonPHOSPHATE ION
Biological Unit 2 (1, 9)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2PO49Ligand/IonPHOSPHATE ION

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:436 , THR A:437 , GLY A:438 , LYS A:439 , SER A:440 , PO4 A:1581 , MG A:1582BINDING SITE FOR RESIDUE PO4 A1580
02AC2SOFTWAREPRO A:435 , ASN A:436 , LYS A:439 , ASP A:479 , ASN A:523 , PO4 A:1580 , MG A:1582 , ARG B:538BINDING SITE FOR RESIDUE PO4 A1581
03AC3SOFTWARESER A:440 , ASP A:479 , PO4 A:1580 , PO4 A:1581 , ARG B:538BINDING SITE FOR RESIDUE MG A1582
04AC4SOFTWAREASN B:436 , THR B:437 , GLY B:438 , LYS B:439 , SER B:440 , MET B:441 , PO4 B:1580 , MG B:1581BINDING SITE FOR RESIDUE PO4 B1579
05AC5SOFTWAREPRO B:435 , ASN B:436 , LYS B:439 , ASP B:479 , ASN B:523 , PO4 B:1579 , MG B:1581 , ARG C:538BINDING SITE FOR RESIDUE PO4 B1580
06AC6SOFTWARESER B:440 , ASP B:479 , PO4 B:1579 , PO4 B:1580 , ARG C:538BINDING SITE FOR RESIDUE MG B1581
07AC7SOFTWAREASN C:436 , THR C:437 , GLY C:438 , LYS C:439 , SER C:440 , MET C:441 , PO4 C:1580 , MG C:1581BINDING SITE FOR RESIDUE PO4 C1579
08AC8SOFTWAREPRO C:435 , ASN C:436 , LYS C:439 , ASP C:479 , ASN C:523 , PO4 C:1579 , MG C:1581 , ARG D:538BINDING SITE FOR RESIDUE PO4 C1580
09AC9SOFTWARESER C:440 , ASP C:479 , PO4 C:1579 , PO4 C:1580BINDING SITE FOR RESIDUE MG C1581
10BC1SOFTWAREASN D:436 , THR D:437 , GLY D:438 , LYS D:439 , SER D:440BINDING SITE FOR RESIDUE PO4 D1580
11BC2SOFTWAREASN E:436 , THR E:437 , GLY E:438 , LYS E:439 , SER E:440 , TYR F:534BINDING SITE FOR RESIDUE PO4 E1579
12BC3SOFTWAREASN F:436 , THR F:437 , GLY F:438 , LYS F:439 , SER F:440BINDING SITE FOR RESIDUE PO4 F1580
13BC4SOFTWAREASN G:436 , THR G:437 , GLY G:438 , LYS G:439 , SER G:440 , PO4 G:1580 , MG G:1581BINDING SITE FOR RESIDUE PO4 G1579
14BC5SOFTWAREPRO G:435 , ASN G:436 , LYS G:439 , ASP G:479 , ASN G:523 , PO4 G:1579 , MG G:1581 , TYR H:534 , ARG H:538BINDING SITE FOR RESIDUE PO4 G1580
15BC6SOFTWARESER G:440 , ASP G:479 , PO4 G:1579 , PO4 G:1580 , ARG H:538BINDING SITE FOR RESIDUE MG G1581
16BC7SOFTWAREASN H:436 , THR H:437 , GLY H:438 , LYS H:439 , SER H:440 , MET H:441 , PO4 H:1580 , MG H:1581BINDING SITE FOR RESIDUE PO4 H1579
17BC8SOFTWAREPRO H:435 , ASN H:436 , LYS H:439 , ASP H:479 , ASN H:523 , PO4 H:1579 , MG H:1581 , ARG I:538BINDING SITE FOR RESIDUE PO4 H1580
18BC9SOFTWARESER H:440 , ASP H:479 , PO4 H:1579 , PO4 H:1580BINDING SITE FOR RESIDUE MG H1581
19CC1SOFTWAREASN I:436 , THR I:437 , GLY I:438 , LYS I:439 , SER I:440 , MET I:441 , PO4 I:1581 , MG I:1582BINDING SITE FOR RESIDUE PO4 I1580
20CC2SOFTWAREPRO I:435 , ASN I:436 , LYS I:439 , ASP I:479 , ASN I:523 , PO4 I:1580 , MG I:1582 , ARG J:538BINDING SITE FOR RESIDUE PO4 I1581
21CC3SOFTWARESER I:440 , ASP I:479 , PO4 I:1580 , PO4 I:1581BINDING SITE FOR RESIDUE MG I1582
22CC4SOFTWAREASN J:436 , THR J:437 , GLY J:438 , LYS J:439 , SER J:440 , TYR K:534BINDING SITE FOR RESIDUE PO4 J1578
23CC5SOFTWAREASN K:436 , THR K:437 , GLY K:438 , LYS K:439 , SER K:440 , TYR L:534BINDING SITE FOR RESIDUE PO4 K1580
24CC6SOFTWAREASN L:436 , THR L:437 , GLY L:438 , LYS L:439 , SER L:440BINDING SITE FOR RESIDUE PO4 L1579

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2V9P)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2V9P)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2V9P)

(-) PROSITE Motifs  (1, 12)

Asymmetric Unit (1, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SF3_HELICASE_1PS51206 Superfamily 3 helicase of DNA viruses domain profile.VE1_BPV1407-557
 
 
 
 
 
 
 
 
 
 
 		  12A:407-557
B:407-557
C:407-557
D:407-557
E:407-557
F:407-557
G:407-557
H:407-557
I:407-557
J:407-557
K:407-557
L:407-557
Biological Unit 1 (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SF3_HELICASE_1PS51206 Superfamily 3 helicase of DNA viruses domain profile.VE1_BPV1407-557
 
 
 
 
 
 
 
 
 
 
 		  6A:407-557
B:407-557
C:407-557
D:407-557
E:407-557
F:407-557
-
-
-
-
-
-
Biological Unit 2 (1, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SF3_HELICASE_1PS51206 Superfamily 3 helicase of DNA viruses domain profile.VE1_BPV1407-557
 
 
 
 
 
 
 
 
 
 
 		  6-
-
-
-
-
-
G:407-557
H:407-557
I:407-557
J:407-557
K:407-557
L:407-557

(-) Exons   (0, 0)

(no "Exon" information available for 2V9P)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:272
 aligned with VE1_BPV1 | P03116 from UniProtKB/Swiss-Prot  Length:605

    Alignment length:279
                                   310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570         
             VE1_BPV1   301 TLNESLQTEKFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCTDESGEQPFNITDADWKSFFVRLWGRLDLID 579
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -----    -------------------------------------------------------------------2v9pA02 A:377-579 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....----..hhhhhhhhhhhh...hhhhhhhhhhhh...hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh..hhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhh.eeehhhhh.hhhhhhhhh....eeeeeehhhhhhhhhhh.hhhhhh..ee.........ee....eeeee......hhhhhhhh..eeeee.......---......hhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------SF3_HELICASE_1  PDB: A:407-557 UniProt: 407-557                                                                                                        ---------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v9p A 301 TLNES----KFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCTD---EQPFNITDADWKSFFVRLWGRLDLID 579
                                |  310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550   |   560       570         
                              305  310                                                                                                                                                                                                                                             550 554                         


Chain B from PDB  Type:PROTEIN  Length:268
 aligned with VE1_BPV1 | P03116 from UniProtKB/Swiss-Prot  Length:605

    Alignment length:278
                                   310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570        
             VE1_BPV1   301 TLNESLQTEKFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCTDESGEQPFNITDADWKSFFVRLWGRLDLI 578
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -----    -------------------------------------------------------------------2v9pB02 B:377-578 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....----..hhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhh.ee.hhhhh.....hhhhhh...eee...hhhhhhhhhhhhhhhhhh.eeee.......eeee...eeeee......hhhhhhhh...eeee......------....hhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------SF3_HELICASE_1  PDB: B:407-557 UniProt: 407-557                                                                                                        --------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v9p B 301 TLNES----KFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCT------PFNITDADWKSFFVRLWGRLDLI 578
                                |  310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540        |-     | 560       570        
                              305  310                                                                                                                                                                                                                                            549    556                      


Chain C from PDB  Type:PROTEIN  Length:267
 aligned with VE1_BPV1 | P03116 from UniProtKB/Swiss-Prot  Length:605

    Alignment length:278
                                   310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570        
             VE1_BPV1   301 TLNESLQTEKFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCTDESGEQPFNITDADWKSFFVRLWGRLDLI 578
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -----    -------------------------------------------------------------------2v9pC02 C:377-578 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....----..hhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhh.eeehhhhh.....hhhhhh...eee...hhhhhhhhhhhhhhhhhh.eeee.......eeee...eeeee..hhhhhhhhhhhhhhheeee.....-------....hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------SF3_HELICASE_1  PDB: C:407-557 UniProt: 407-557                                                                                                        --------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v9p C 301 TLNES----KFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPC-------PFNITDADWKSFFVRLWGRLDLI 578
                                |  310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       | -     | 560       570        
                              305  310                                                                                                                                                                                                                                           548     556                      


Chain D from PDB  Type:PROTEIN  Length:274
 aligned with VE1_BPV1 | P03116 from UniProtKB/Swiss-Prot  Length:605

    Alignment length:279
                                   310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570         
             VE1_BPV1   301 TLNESLQTEKFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCTDESGEQPFNITDADWKSFFVRLWGRLDLID 579
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -----    -------------------------------------------------------------------2v9pD02 D:377-579 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....----..hhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhh.eeehhhhh.hhhhhhhhhh...eee...hhhhhhhhhhhhhhhhh..eeee.......eeee...eeeee..hhhhhhhhhhhh...eeee......-.........hhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------SF3_HELICASE_1  PDB: D:407-557 UniProt: 407-557                                                                                                        ---------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v9p D 301 TLNES----KFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCT-ESGEQPFNITDADWKSFFVRLWGRLDLID 579
                                |  310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540        |-|      560       570         
                              305  310                                                                                                                                                                                                                                            549 |                            
                                                                                                                                                                                                                                                                                    551                            


Chain E from PDB  Type:PROTEIN  Length:270
 aligned with VE1_BPV1 | P03116 from UniProtKB/Swiss-Prot  Length:605

    Alignment length:278
                                   310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570        
             VE1_BPV1   301 TLNESLQTEKFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCTDESGEQPFNITDADWKSFFVRLWGRLDLI 578
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -----    -------------------------------------------------------------------2v9pE02 E:377-578 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....----..hhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhhhhhh......eeeee.....hhhhhhhhhhhhhh.eeehhhhhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhhhhhh..eee.......eee....eeeee......hhhhhhhh...eeee........----....hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------SF3_HELICASE_1  PDB: E:407-557 UniProt: 407-557                                                                                                        --------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v9p E 301 TLNES----KFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCTDE----PFNITDADWKSFFVRLWGRLDLI 578
                                |  310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550|    | 560       570        
                              305  310                                                                                                                                                                                                                                              551  556                      


Chain F from PDB  Type:PROTEIN  Length:269
 aligned with VE1_BPV1 | P03116 from UniProtKB/Swiss-Prot  Length:605

    Alignment length:279
                                   310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570         
             VE1_BPV1   301 TLNESLQTEKFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCTDESGEQPFNITDADWKSFFVRLWGRLDLID 579
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -----    -------------------------------------------------------------------2v9pF02 F:377-579 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....----..hhhhhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh.....hhhhhhhhhhh..hhhhhhhhhhhhhh......eeeee.....hhhhhhhhhhhhhh.eee...hhhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhhhhhh..eee.......eee....eeeee......hhhhhhhh...eeee......------....hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------SF3_HELICASE_1  PDB: F:407-557 UniProt: 407-557                                                                                                        ---------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v9p F 301 TLNES----KFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCT------PFNITDADWKSFFVRLWGRLDLID 579
                                |  310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540        |-     | 560       570         
                              305  310                                                                                                                                                                                                                                            549    556                       


Chain G from PDB  Type:PROTEIN  Length:270
 aligned with VE1_BPV1 | P03116 from UniProtKB/Swiss-Prot  Length:605

    Alignment length:278
                                   310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570        
             VE1_BPV1   301 TLNESLQTEKFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCTDESGEQPFNITDADWKSFFVRLWGRLDLI 578
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -----    -------------------------------------------------------------------2v9pG02 G:377-578 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....----..hhhhhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh..hhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhh.eeehhhhh.hhhhhhhhh....eeeeeehhhhhhhhhhhhhhhhhh..eee.......eee....eeeee..hhhhhhhhhhhh..eeeee.......----.....hhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------SF3_HELICASE_1  PDB: G:407-557 UniProt: 407-557                                                                                                        --------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v9p G 301 TLNES----KFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCTD----QPFNITDADWKSFFVRLWGRLDLI 578
                                |  310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550    |  560       570        
                              305  310                                                                                                                                                                                                                                             550  555                       


Chain H from PDB  Type:PROTEIN  Length:268
 aligned with VE1_BPV1 | P03116 from UniProtKB/Swiss-Prot  Length:605

    Alignment length:278
                                   310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570        
             VE1_BPV1   301 TLNESLQTEKFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCTDESGEQPFNITDADWKSFFVRLWGRLDLI 578
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -----    -------------------------------------------------------------------2v9pH02 H:377-578 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....----..hhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhh.eeehhhhh.....hhhhhh...eee...hhhhhhhhhhhhhhhhh..eeee.......eeee...eeeee..hhhhhhhhhhhh...eeee......------....hhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------SF3_HELICASE_1  PDB: H:407-557 UniProt: 407-557                                                                                                        --------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v9p H 301 TLNES----KFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCT------PFNITDADWKSFFVRLWGRLDLI 578
                                |  310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540        |-     | 560       570        
                              305  310                                                                                                                                                                                                                                            549    556                      


Chain I from PDB  Type:PROTEIN  Length:270
 aligned with VE1_BPV1 | P03116 from UniProtKB/Swiss-Prot  Length:605

    Alignment length:279
                                   310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570         
             VE1_BPV1   301 TLNESLQTEKFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCTDESGEQPFNITDADWKSFFVRLWGRLDLID 579
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -----    -------------------------------------------------------------------2v9pI02 I:377-579 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....----..hhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhh.eeehhhhh.....hhhhhh...eee...hhhhhhhhhhhhhhhhhh.eeee.......eeee...eeeee..hhhhhhhhhhhhhhheeee.......-----....hhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------SF3_HELICASE_1  PDB: I:407-557 UniProt: 407-557                                                                                                        ---------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v9p I 301 TLNES----KFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCTD-----PFNITDADWKSFFVRLWGRLDLID 579
                                |  310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550     | 560       570         
                              305  310                                                                                                                                                                                                                                             550   556                       


Chain J from PDB  Type:PROTEIN  Length:272
 aligned with VE1_BPV1 | P03116 from UniProtKB/Swiss-Prot  Length:605

    Alignment length:277
                                   310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       
             VE1_BPV1   301 TLNESLQTEKFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCTDESGEQPFNITDADWKSFFVRLWGRLDL 577
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -----    -------------------------------------------------------------------2v9pJ02 J:377-577 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....----..hhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhhhhhhhhhhh.....eeeee.....hhhhhhhhhhhhhh.eeehhhhh.hhhhhhhhhh...eee...hhhhhhhhhhhhhhhhhh.eeeee.....eeeee...eeeee......hhhhhhhh...eeee......-.........hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------SF3_HELICASE_1  PDB: J:407-557 UniProt: 407-557                                                                                                        -------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v9p J 301 TLNES----KFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCT-ESGEQPFNITDADWKSFFVRLWGRLDL 577
                                |  310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540        |-|      560       570       
                              305  310                                                                                                                                                                                                                                            549 |                          
                                                                                                                                                                                                                                                                                    551                          


Chain K from PDB  Type:PROTEIN  Length:269
 aligned with VE1_BPV1 | P03116 from UniProtKB/Swiss-Prot  Length:605

    Alignment length:279
                                   310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570         
             VE1_BPV1   301 TLNESLQTEKFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCTDESGEQPFNITDADWKSFFVRLWGRLDLID 579
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -----    -------------------------------------------------------------------2v9pK02 K:377-579 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....----..hhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh..hhhhhhhhhhhhhh......eeeee.....hhhhhhhhhhhhhh.eeehhhhhhhhhhhhhhhh...eee...hhhhhhhhhhhhhhhhhh..eee.......eee....eeeee......hhhhhhhhh..eeee......------....hhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------SF3_HELICASE_1  PDB: K:407-557 UniProt: 407-557                                                                                                        ---------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v9p K 301 TLNES----KFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCT------PFNITDADWKSFFVRLWGRLDLID 579
                                |  310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540        |-     | 560       570         
                              305  310                                                                                                                                                                                                                                            549    556                       


Chain L from PDB  Type:PROTEIN  Length:267
 aligned with VE1_BPV1 | P03116 from UniProtKB/Swiss-Prot  Length:605

    Alignment length:278
                                   310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570        
             VE1_BPV1   301 TLNESLQTEKFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPCTDESGEQPFNITDADWKSFFVRLWGRLDLI 578
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -----    -------------------------------------------------------------------2v9pL02 L:377-578 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                     CATH domains
           Pfam domains (1) PPV_E    1_C-2v9pL01 L:301-578                                                                                                                                                                                                                                                         Pfam domains (1)
           Pfam domains (2) PPV_E    1_C-2v9pL02 L:301-578                                                                                                                                                                                                                                                         Pfam domains (2)
           Pfam domains (3) PPV_E    1_C-2v9pL03 L:301-578                                                                                                                                                                                                                                                         Pfam domains (3)
           Pfam domains (4) PPV_E    1_C-2v9pL04 L:301-578                                                                                                                                                                                                                                                         Pfam domains (4)
           Pfam domains (5) PPV_E    1_C-2v9pL05 L:301-578                                                                                                                                                                                                                                                         Pfam domains (5)
           Pfam domains (6) PPV_E    1_C-2v9pL06 L:301-578                                                                                                                                                                                                                                                         Pfam domains (6)
           Pfam domains (7) PPV_E    1_C-2v9pL07 L:301-578                                                                                                                                                                                                                                                         Pfam domains (7)
           Pfam domains (8) PPV_E    1_C-2v9pL08 L:301-578                                                                                                                                                                                                                                                         Pfam domains (8)
           Pfam domains (9) PPV_E    1_C-2v9pL09 L:301-578                                                                                                                                                                                                                                                         Pfam domains (9)
          Pfam domains (10) PPV_E    1_C-2v9pL10 L:301-578                                                                                                                                                                                                                                                         Pfam domains (10)
          Pfam domains (11) PPV_E    1_C-2v9pL11 L:301-578                                                                                                                                                                                                                                                         Pfam domains (11)
          Pfam domains (12) PPV_E    1_C-2v9pL12 L:301-578                                                                                                                                                                                                                                                         Pfam domains (12)
         Sec.struct. author .....----..hhhhhhhhhhhhh..hhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh......hhhhhhhhhhhh.hhhhhhhhhhhhhh......eeeee.....hhhhhhhhhhhhh..eee...hhhhhhhhhhhhh...eee...hhhhhhhhhhhh.hhhhh..eee.......eee....eeeee......hhhhhhhh...eeee.....-------....hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------SF3_HELICASE_1  PDB: L:407-557 UniProt: 407-557                                                                                                        --------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v9p L 301 TLNES----KFDFGTMVQWAYDHKYAEESKIAYEYALAAGSDSNARAFLATNSQAKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIKAPPLLVTSNIDVQAEDRYLYLHSRVQTFRFEQPC-------PFNITDADWKSFFVRLWGRLDLI 578
                                |  310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       | -     | 560       570        
                              305  310                                                                                                                                                                                                                                           548     556
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2V9P)

(-) CATH Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 12)

Asymmetric Unit
(-)
Clan: P-loop_NTPase (1112)
(-)
Family: PPV_E1_C (5)
(-)
Bovine papillomavirus type 1 (3)
1aPPV_E1_C-2v9pL01L:301-578
1bPPV_E1_C-2v9pL02L:301-578
1cPPV_E1_C-2v9pL03L:301-578
1dPPV_E1_C-2v9pL04L:301-578
1ePPV_E1_C-2v9pL05L:301-578
1fPPV_E1_C-2v9pL06L:301-578
1gPPV_E1_C-2v9pL07L:301-578
1hPPV_E1_C-2v9pL08L:301-578
1iPPV_E1_C-2v9pL09L:301-578
1jPPV_E1_C-2v9pL10L:301-578
1kPPV_E1_C-2v9pL11L:301-578
1lPPV_E1_C-2v9pL12L:301-578

(-) Gene Ontology  (11, 11)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (VE1_BPV1 | P03116)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0004003    ATP-dependent DNA helicase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of the DNA helix.
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0004386    helicase activity    Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016817    hydrolase activity, acting on acid anhydrides    Catalysis of the hydrolysis of any acid anhydride.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0032508    DNA duplex unwinding    The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating a region of unpaired single strands.
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
cellular component
    GO:0042025    host cell nucleus    A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.

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  2v9p
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  VE1_BPV1 | P03116
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VE1_BPV1 | P03116: 1f08 1ksx 1ksy 2gxa 5a9k

(-) Related Entries Specified in the PDB File

1f08 CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF THEREPLICATION INITIATION PROTEIN E1 FROM PAPILLOMAVIRUS
1ksx CRYSTAL STRUCTURES OF TWO INTERMEDIATES IN THE ASSEMBLY OFTHE PAPILLOMAVIRUS REPLICATION INITIATION COMPLEX
1ksy CRYSTAL STRUCTURES OF TWO INTERMEDIATES IN THE ASSEMBLY OFTHE PAPILLOMAVIRUS REPLICATION INITIATION COMPLEX
2gxa CRYSTAL STRUCTURE OF PAPILLOMAVIRUS E1 HEXAMERIC HELICASEWITH SSDNA AND MGADP