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(-) Description

Title :  CRYSTAL STRUCTURE OF THE FENNA-MATTHEWS-OLSON PROTEIN FROM CHLOROBACULUM TEPIDUM
 
Authors :  D. Tronrud, A. Camara-Artigas, R. Blankenship, J. P. Allen
Date :  25 Sep 08  (Deposition) - 12 May 09  (Release) - 16 Mar 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,C
Biol. Unit 1:  A  (3x)
Biol. Unit 2:  C  (3x)
Keywords :  Beta Sheet, Gamma Turn, Bacteriochlorophyll, Chlorophyll, Chromophore, Electron Transport, Magnesium, Metal-Binding, Photosynthesis, Reaction Center, Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. E. Tronrud, J. Wen, L. Gay, R. E. Blankenship
The Structural Basis For The Difference In Absorbance Spectra For The Fmo Antenna Protein From Various Green Sulfur Bacteria.
Photosynth. Res. V. 100 79 2009
PubMed-ID: 19437128  |  Reference-DOI: 10.1007/S11120-009-9430-6
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BACTERIOCHLOROPHYLL A PROTEIN
    Chains: A, C
    Organism Scientific: CHLOROBACULUM TEPIDUM
    Organism Taxid: 1097
    Other Details: THIS SPECIES WAS FORMERLY KNOWN AS CHLOROBIUM TEPIDUM
    Synonym: BCHL A PROTEIN, BCP, FENNA-MATTHEWS-OLSON PROTEIN, FMO PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AC
Biological Unit 1 (3x): A 
Biological Unit 2 (3x):  C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 16)

Asymmetric Unit (1, 16)
No.NameCountTypeFull Name
1BCL16Ligand/IonBACTERIOCHLOROPHYLL A
Biological Unit 1 (1, 24)
No.NameCountTypeFull Name
1BCL24Ligand/IonBACTERIOCHLOROPHYLL A
Biological Unit 2 (1, 24)
No.NameCountTypeFull Name
1BCL24Ligand/IonBACTERIOCHLOROPHYLL A

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPHE A:108 , HIS A:110 , PHE A:112 , ALA A:128 , VAL A:129 , MET A:149 , VAL A:151 , ASP A:157 , LEU A:158 , THR A:161 , TRP A:162 , THR A:165 , ILE A:179 , TRP A:183 , BCL A:372 , BCL A:376 , BCL A:378 , HOH A:1093BINDING SITE FOR RESIDUE BCL A 371
02AC2SOFTWARESER A:72 , VAL A:74 , ASN A:79 , LEU A:81 , VAL A:129 , VAL A:133 , ILE A:137 , TYR A:138 , GLN A:140 , PHE A:182 , TRP A:183 , BCL A:371 , BCL A:373 , BCL A:377 , HOH A:1043BINDING SITE FOR RESIDUE BCL A 372
03AC3SOFTWAREALA A:11 , TYR A:15 , PRO A:38 , PRO A:39 , ALA A:40 , PHE A:257 , SER A:259 , ILE A:264 , HIS A:297 , VAL A:300 , ASN A:304 , BCL A:372 , BCL A:374 , BCL A:375 , BCL A:376 , BCL A:377BINDING SITE FOR RESIDUE BCL A 373
04AC4SOFTWARETYR A:15 , ILE A:17 , VAL A:29 , ALA A:31 , LEU A:287 , HIS A:289 , PRO A:290 , PRO A:293 , HIS A:297 , TYR A:344 , TRP A:347 , PHE A:359 , BCL A:373 , BCL A:375 , BCL A:377 , HOH A:1081BINDING SITE FOR RESIDUE BCL A 374
05AC5SOFTWAREVAL A:54 , PHE A:70 , SER A:234 , ARG A:237 , GLU A:240 , LEU A:241 , PHE A:242 , PRO A:243 , ALA A:255 , PRO A:290 , BCL A:373 , BCL A:374 , BCL A:376 , BCL A:377 , HOH A:1053BINDING SITE FOR RESIDUE BCL A 375
06AC6SOFTWAREILE A:66 , ALA A:85 , ILE A:87 , ARG A:95 , ILE A:96 , SER A:97 , VAL A:118 , GLN A:143 , HIS A:145 , TRP A:183 , HIS A:226 , SER A:234 , TRP A:238 , VAL A:253 , BCL A:371 , BCL A:373 , BCL A:375 , BCL A:377BINDING SITE FOR RESIDUE BCL A 376
07AC7SOFTWAREALA A:40 , TYR A:138 , ALA A:188 , GLN A:197 , PRO A:293 , HIS A:296 , HIS A:297 , VAL A:300 , BCL A:372 , BCL A:373 , BCL A:374 , BCL A:375 , BCL A:376 , HOH A:1057BINDING SITE FOR RESIDUE BCL A 377
08AC8SOFTWARELEU A:121 , TYR A:123 , ARG A:125 , ASP A:160 , THR A:161 , THR A:165 , SER A:171 , THR A:172 , PHE A:175 , TRP A:178 , ILE A:179 , PHE A:182 , BCL A:371BINDING SITE FOR RESIDUE BCL A 378
09AC9SOFTWAREPHE C:108 , HIS C:110 , PHE C:112 , SER C:126 , VAL C:129 , VAL C:151 , LEU C:158 , THR C:161 , TRP C:162 , THR C:165 , ILE C:179 , TRP C:183 , BCL C:372 , BCL C:376 , BCL C:378 , HOH C:1060BINDING SITE FOR RESIDUE BCL C 371
10BC1SOFTWARESER C:72 , VAL C:74 , ASN C:79 , LEU C:81 , PHE C:114 , VAL C:129 , VAL C:133 , ILE C:137 , TYR C:138 , GLN C:140 , PHE C:182 , TRP C:183 , ILE C:185 , BCL C:371 , BCL C:373 , BCL C:377 , HOH C:1043 , HOH C:1118BINDING SITE FOR RESIDUE BCL C 372
11BC2SOFTWAREALA C:11 , TYR C:15 , PRO C:38 , PRO C:39 , ALA C:40 , PHE C:257 , SER C:259 , ILE C:264 , HIS C:297 , VAL C:300 , ASN C:304 , BCL C:372 , BCL C:374 , BCL C:375 , BCL C:376 , BCL C:377BINDING SITE FOR RESIDUE BCL C 373
12BC3SOFTWARETYR C:15 , ILE C:17 , VAL C:29 , ALA C:31 , LEU C:287 , HIS C:289 , PRO C:293 , HIS C:297 , TYR C:344 , TRP C:347 , PHE C:359 , ILE C:361 , BCL C:373 , BCL C:375 , BCL C:377 , HOH C:1063BINDING SITE FOR RESIDUE BCL C 374
13BC4SOFTWAREVAL C:54 , PHE C:70 , SER C:234 , LEU C:241 , PHE C:242 , PRO C:243 , ALA C:255 , PRO C:290 , BCL C:373 , BCL C:374 , BCL C:376 , BCL C:377 , HOH C:1050BINDING SITE FOR RESIDUE BCL C 375
14BC5SOFTWAREILE C:66 , ALA C:85 , ILE C:87 , ARG C:95 , ILE C:96 , SER C:97 , GLY C:116 , VAL C:118 , GLN C:143 , HIS C:145 , TRP C:183 , HIS C:226 , SER C:234 , TRP C:238 , GLN C:252 , VAL C:253 , BCL C:371 , BCL C:373 , BCL C:375 , BCL C:377BINDING SITE FOR RESIDUE BCL C 376
15BC6SOFTWAREALA C:40 , TYR C:138 , ALA C:188 , ALA C:191 , GLN C:197 , PRO C:293 , HIS C:296 , HIS C:297 , VAL C:300 , BCL C:372 , BCL C:373 , BCL C:374 , BCL C:375 , BCL C:376 , HOH C:1054BINDING SITE FOR RESIDUE BCL C 377
16BC7SOFTWARELEU C:121 , TYR C:123 , ARG C:125 , ASP C:160 , THR C:161 , THR C:165 , SER C:171 , THR C:172 , PHE C:175 , TRP C:178 , ILE C:179 , PHE C:182 , BCL C:371BINDING SITE FOR RESIDUE BCL C 378

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3ENI)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Leu A:44 -Pro A:45
2Ala A:326 -Pro A:327
3Leu C:44 -Pro C:45
4Ala C:326 -Pro C:327

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3ENI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3ENI)

(-) Exons   (0, 0)

(no "Exon" information available for 3ENI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:358
 aligned with BCPA_CHLTE | Q46393 from UniProtKB/Swiss-Prot  Length:366

    Alignment length:358
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358        
           BCPA_CHLTE     9 VTTAHSDYEIVLEGGSSSWGKVKARAKVNAPPASPLLPADCDVKLNVKPLDPAKGFVRISAVFESIVDSTKNKLTIEADIANETKERRISVGEGMVSVGDFSHTFSFEGSVVNLFYYRSDAVRRNVPNPIYMQGRQFHDILMKVPLDNNDLIDTWEGTVKAIGSTGAFNDWIRDFWFIGPAFTALNEGGQRISRIEVNGLNTESGPKGPVGVSRWRFSHGGSGMVDSISRWAELFPSDKLNRPAQVEAGFRSDSQGIEVKVDGEFPGVSVDAGGGLRRILNHPLIPLVHHGMVGKFNNFNVDAQLKVVLPKGYKIRYAAPQYRSQNLEEYRWSGGAYARWVEHVCKGGVGQFEILYAQ 366
               SCOP domains d3enia_ A: Bacteriochlorophyll A protein                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 3eniA00 A:8-365 Bacteriochlorophyll-a Protein                                                                                                                                                                                                                                                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee.......eeeeeeeee..........eeeeeeeeeeeee....eeeeeeeeeeee..eeeeeeeeeeeee....eeeeeeeeeeee..eeeeeeeeeeeeeee...hhhhhhhh.......eeeeeeeeeeee..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..hhhhhhhhh.eee...eeeeeeeeee..eeeeeeeeeeeeee...hhhhhh.....hhhhh...eeeeeeeeee..eeeeeeeeee...eeeee..eeee....hhhhhhhhh.......eeeeeeeee.....eeeeee....eee..eeeeehhhhhhhhhhhhh......eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3eni A   8 VTTAHSDYEIVLEGGSSSWGKVKARAKVNAPPASPLLPADCDVKLNVKPLDPAKGFVRISAVFESIVDSTKNKLTIEADIANETKERRISVGEGMVSVGDFSHTFSFEGSVVNLFYYRSDAVRRNVPNPIYMQGRQFHDILMKVPLDNNDLIDTWEGTVKAIGSTGAFNDWIRDFWFIGPAFTALNEGGQRISRIEVNGLNTESGPKGPVGVSRWRFSHGGSGMVDSISRWAELFPSDKLNRPAQVEAGFRSDSQGIEVKVDGEFPGVSVDAGGGLRRILNHPLIPLVHHGMVGKFNNFNVDAQLKVVLPKGYKIRYAAPQYRSQNLEEYRWSGGAYARWVEHVCKGGVGQFEILYAQ 365
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357        


Chain C from PDB  Type:PROTEIN  Length:357
 aligned with BCPA_CHLTE | Q46393 from UniProtKB/Swiss-Prot  Length:366

    Alignment length:358
                                    18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358        
           BCPA_CHLTE     9 VTTAHSDYEIVLEGGSSSWGKVKARAKVNAPPASPLLPADCDVKLNVKPLDPAKGFVRISAVFESIVDSTKNKLTIEADIANETKERRISVGEGMVSVGDFSHTFSFEGSVVNLFYYRSDAVRRNVPNPIYMQGRQFHDILMKVPLDNNDLIDTWEGTVKAIGSTGAFNDWIRDFWFIGPAFTALNEGGQRISRIEVNGLNTESGPKGPVGVSRWRFSHGGSGMVDSISRWAELFPSDKLNRPAQVEAGFRSDSQGIEVKVDGEFPGVSVDAGGGLRRILNHPLIPLVHHGMVGKFNNFNVDAQLKVVLPKGYKIRYAAPQYRSQNLEEYRWSGGAYARWVEHVCKGGVGQFEILYAQ 366
               SCOP domains d3enic_ C: Bacteriochlorophyll A protein                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains 3eniC00 C:8-365 Bacteriochlorophyll-a Protein                                                                                                                                                                                                                                                                                                                          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeee.......eeeeeeeee..........eeeeeeeeeeeee....eeeeeeeeeeee..eeeeeeeeeeeee....eeeeeeeeeeee..eeeeeeeeeeeeeee...hhhhhh.........eeeeeeeeeeee..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..hhhhhhhhh.eee...eeeeeeeee.-..eeeeeeeeeeeee...hhhhhh.....hhhhh...eeeeeeeeee..eeeeeeeeee...eeeee..eeee....hhhhhhhhh.......eeeeeeeee.....eeeeee....eee..eeeeehhhhhhhhhhhhh......eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3eni C   8 VTTAHSDYEIVLEGGSSSWGKVKARAKVNAPPASPLLPADCDVKLNVKPLDPAKGFVRISAVFESIVDSTKNKLTIEADIANETKERRISVGEGMVSVGDFSHTFSFEGSVVNLFYYRSDAVRRNVPNPIYMQGRQFHDILMKVPLDNNDLIDTWEGTVKAIGSTGAFNDWIRDFWFIGPAFTALNEGGQRISRIEVNGLNTESG-KGPVGVSRWRFSHGGSGMVDSISRWAELFPSDKLNRPAQVEAGFRSDSQGIEVKVDGEFPGVSVDAGGGLRRILNHPLIPLVHHGMVGKFNNFNVDAQLKVVLPKGYKIRYAAPQYRSQNLEEYRWSGGAYARWVEHVCKGGVGQFEILYAQ 365
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207    | |217       227       237       247       257       267       277       287       297       307       317       327       337       347       357        
                                                                                                                                                                                                                                      212 |                                                                                                                                                       
                                                                                                                                                                                                                                        214
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3ENI)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,C   (BCPA_CHLTE | Q46393)
molecular function
    GO:0042314    bacteriochlorophyll binding    Interacting selectively and non-covalently with bacteriochlorophyll, a form of chlorophyll found in photosynthetic bacteria, such as the purple and green bacteria. There are several types, designated a to g. Bacteriochlorophyll a and bacteriochlorophyll b are structurally similar to the chlorophyll a and chlorophyll b found in plants.
    GO:0016168    chlorophyll binding    Interacting selectively and non-covalently with chlorophyll; any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0015979    photosynthesis    The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
    GO:0018298    protein-chromophore linkage    The covalent or noncovalent attachment of a chromophore to a protein.

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  BCPA_CHLTE | Q46393
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BCPA_CHLTE | Q46393: 3bsd 5h8z

(-) Related Entries Specified in the PDB File

1ksa EVEN EARLIER MODEL REFINED IN NEARLY CORRECT SPACE GROUP
1m50 EARLIER MODEL REFINED AGAINST THE SAME DIFFRACTION DATA SET
3eoj FMO PROTEIN FROM PROSTHECOCHLORIS AESTUARII 2K AT 1.3A RESOLUTION