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(-) Description

Title :  CRYSTAL STRUCTURE OF THE SOLUBLE DOMAIN OF ANIA FROM NEISSERIA GONORRHOEAE
 
Authors :  M. J. Boulanger, M. E. P. Murphy
Date :  06 Nov 01  (Deposition) - 05 Dec 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Ania, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Boulanger, M. E. Murphy
Crystal Structure Of The Soluble Domain Of The Major Anaerobically Induced Outer Membrane Protein (Ania) From Pathogenic Neisseria: A New Class Of Copper-Containing Nitrite Reductases.
J. Mol. Biol. V. 315 1111 2002
PubMed-ID: 11827480  |  Reference-DOI: 10.1006/JMBI.2001.5251
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MAJOR OUTER MEMBRANE PROTEIN PAN 1
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: HMS174
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 42-364, SOLUBLE DOMAIN
    Gene: ANIA
    Organism Scientific: NEISSERIA GONORRHOEAE
    Organism Taxid: 485
    Synonym: ANIA

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1CU12Ligand/IonCOPPER (II) ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:94 , CYS A:135 , HIS A:143 , MET A:148BINDING SITE FOR RESIDUE CU A 501
02AC2SOFTWAREASP A:97 , HIS A:99 , HIS A:134 , HIS B:289 , HOH B:682BINDING SITE FOR RESIDUE CU A 502
03AC3SOFTWAREHIS B:94 , CYS B:135 , HIS B:143 , MET B:148BINDING SITE FOR RESIDUE CU B 501
04AC4SOFTWAREASP B:97 , HIS B:99 , HIS B:134 , HOH B:683 , HIS C:289BINDING SITE FOR RESIDUE CU B 502
05AC5SOFTWAREHIS C:94 , CYS C:135 , HIS C:143 , MET C:148BINDING SITE FOR RESIDUE CU C 501
06AC6SOFTWAREHIS A:240 , HIS A:289 , HOH A:696 , ASP C:97 , HIS C:99 , HIS C:134 , HOH C:682BINDING SITE FOR RESIDUE CU C 502
07AC7SOFTWAREHIS D:94 , CYS D:135 , HIS D:143 , MET D:148BINDING SITE FOR RESIDUE CU D 501
08AC8SOFTWAREASP D:97 , HIS D:99 , HIS D:134 , HOH D:710 , HIS E:240 , HIS E:289BINDING SITE FOR RESIDUE CU D 502
09AC9SOFTWAREHIS E:94 , CYS E:135 , HIS E:143 , MET E:148BINDING SITE FOR RESIDUE CU E 501
10BC1SOFTWAREHIS E:99 , HIS E:134 , HOH E:693 , HIS F:289BINDING SITE FOR RESIDUE CU E 502
11BC2SOFTWAREHIS F:94 , CYS F:135 , HIS F:143 , MET F:148BINDING SITE FOR RESIDUE CU F 501
12BC3SOFTWAREHIS D:240 , HIS D:289 , HIS F:99 , HIS F:134 , HOH F:657 , HOH F:658BINDING SITE FOR RESIDUE CU F 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1KBW)

(-) Cis Peptide Bonds  (19, 19)

Asymmetric Unit
No.Residues
1Val A:67 -Pro A:68
2Ala A:138 -Pro A:139
3Gly A:232 -Pro A:233
4Val B:67 -Pro B:68
5Ala B:138 -Pro B:139
6Gly B:232 -Pro B:233
7Val C:67 -Pro C:68
8Ala C:138 -Pro C:139
9Gly C:232 -Pro C:233
10Val D:67 -Pro D:68
11Ala D:138 -Pro D:139
12Gly D:232 -Pro D:233
13Ala E:24 -Pro E:25
14Val E:67 -Pro E:68
15Ala E:138 -Pro E:139
16Gly E:232 -Pro E:233
17Val F:67 -Pro F:68
18Ala F:138 -Pro F:139
19Gly F:232 -Pro F:233

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1KBW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1KBW)

(-) Exons   (0, 0)

(no "Exon" information available for 1KBW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:302
 aligned with ANIA_NEIGO | Q02219 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:302
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352  
           ANIA_NEIGO    53 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGSIAGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGSYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 354
               SCOP domains d1kbwa1 A:13-163 Nitrite reductase, NIR                                                                                                                d1kbwa2 A:164-314 Nitrite reductase, NIR                                                                                                                SCOP domains
               CATH domains 1kbwA01 A:13-156 Cupredoxins -  blue copper proteins                                                                                            ----1kbwA02 A:161-314 Cupredoxins -  blue copper proteins                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...................eeeeeeeeeeeeeeee..eeeeeeee........eeee...eeeeeeee..........ee....hhhhhh.........eeeeeee....eeeeee....hhhhhhhh..eeeeeee.........eeeeeeeeee.........eee..hhhhhhh....eeee.......hhhhheeee...eeeeeeeeee....eeeeee.....eee.hhh..ee....eeee....eeeeeee....eeeeeee..hhhhhhhh.eeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1kbw A  13 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGALTGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 314
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312  


Chain B from PDB  Type:PROTEIN  Length:302
 aligned with ANIA_NEIGO | Q02219 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:302
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352  
           ANIA_NEIGO    53 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGSIAGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGSYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 354
               SCOP domains d1kbwb1 B:13-163 Nitrite reductase, NIR                                                                                                                d1kbwb2 B:164-314 Nitrite reductase, NIR                                                                                                                SCOP domains
               CATH domains 1kbwB01 B:13-156 Cupredoxins -  blue copper proteins                                                                                            ----1kbwB02 B:161-314 Cupredoxins -  blue copper proteins                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...................eeeeeeeeeeeeeeee..eeeeeeee........eeee...eeeeeeee..........ee....hhhhhh.........eeeeeee....eeeeee....hhhhhhhh..eeeeeee.........eeeeeeeeee.........eee..hhhhhhh....eeee.......hhhhheeee...eeeeeeeeee....eeeeee.....eee.hhh..ee.....eee...eeeeeeee....eeeeeee..hhhhhhhh.eeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1kbw B  13 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGALTGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 314
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312  


Chain C from PDB  Type:PROTEIN  Length:302
 aligned with ANIA_NEIGO | Q02219 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:302
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352  
           ANIA_NEIGO    53 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGSIAGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGSYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 354
               SCOP domains d1kbwc1 C:13-163 Nitrite reductase, NIR                                                                                                                d1kbwc2 C:164-314 Nitrite reductase, NIR                                                                                                                SCOP domains
               CATH domains 1kbwC01 C:13-156 Cupredoxins -  blue copper proteins                                                                                            ----1kbwC02 C:161-314 Cupredoxins -  blue copper proteins                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...................eeeeeeeeeeeeeeee..eeeeeeee........eeee...eeeeeeee..........ee....hhhhhh.........eeeeeee....eeeeee....hhhhhhhh..eeeeeee.........eeeeeeeeee.........eee..hhhhhhh....eeee.......hhhhheeee...eeeeeeeeee....eeeeee.....eee.hhh..ee....eeee...eeeeeeee....eeeeeee..hhhhhhhh.eeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1kbw C  13 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGALTGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 314
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312  


Chain D from PDB  Type:PROTEIN  Length:302
 aligned with ANIA_NEIGO | Q02219 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:302
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352  
           ANIA_NEIGO    53 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGSIAGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGSYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 354
               SCOP domains d1kbwd1 D:13-163 Nitrite reductase, NIR                                                                                                                d1kbwd2 D:164-314 Nitrite reductase, NIR                                                                                                                SCOP domains
               CATH domains 1kbwD01 D:13-156 Cupredoxins -  blue copper proteins                                                                                            ----1kbwD02 D:161-314 Cupredoxins -  blue copper proteins                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...................eeeeeeeeeeeeeeee..eeeeeeee........eeee...eeeeeeee..........ee....hhhhhh.........eeeeeee....eeeeee....hhhhhhhh..eeeeeee.........eeeeeeeeee.........eee..hhhhhhhh...eeee.......hhhhheeee...eeeeeeeeee....eeeeee.....eee.hhh..ee....eeee...eeeeeeee....eeeeeee..hhhhhhhh.eeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1kbw D  13 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGALTGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 314
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312  


Chain E from PDB  Type:PROTEIN  Length:302
 aligned with ANIA_NEIGO | Q02219 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:302
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352  
           ANIA_NEIGO    53 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGSIAGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGSYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 354
               SCOP domains d1kbwe1 E:13-163 Nitrite reductase, NIR                                                                                                                d1kbwe2 E:164-314 Nitrite reductase, NIR                                                                                                                SCOP domains
               CATH domains 1kbwE01 E:13-156 Cupredoxins -  blue copper proteins                                                                                            ----1kbwE02 E:161-314 Cupredoxins -  blue copper proteins                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...................eeeeeeeeeeeeeeee..eeeeeeee........eeee...eeeeeeee..........ee....hhhhhh.........eeeeeee....eeeeee....hhhhhhhh..eeeeeee.........eeeeeeeeee.........eee..hhhhhhhh...eeee.......hhhhheeee...eeeeeeeeee....eeeeee.....eee.hhh..ee....eeee...eeeeeeee....eeeeeee..hhhhhhhh.eeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1kbw E  13 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGALTGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 314
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312  


Chain F from PDB  Type:PROTEIN  Length:302
 aligned with ANIA_NEIGO | Q02219 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:302
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352  
           ANIA_NEIGO    53 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGSIAGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGSYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 354
               SCOP domains d1kbwf1 F:13-163 Nitrite reductase, NIR                                                                                                                d1kbwf2 F:164-314 Nitrite reductase, NIR                                                                                                                SCOP domains
               CATH domains 1kbwF01 F:13-156 Cupredoxins -  blue copper proteins                                                                                            ----1kbwF02 F:161-314 Cupredoxins -  blue copper proteins                                                                                                      CATH domains
           Pfam domains (1) -------------------------------Cu-oxidase_3-1kbwF01 F:44-159                                                                                       ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -------------------------------Cu-oxidase_3-1kbwF02 F:44-159                                                                                       ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) -------------------------------Cu-oxidase_3-1kbwF03 F:44-159                                                                                       ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) -------------------------------Cu-oxidase_3-1kbwF04 F:44-159                                                                                       ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) -------------------------------Cu-oxidase_3-1kbwF05 F:44-159                                                                                       ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) -------------------------------Cu-oxidase_3-1kbwF06 F:44-159                                                                                       ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (6)
         Sec.struct. author ...eee...................eeeeeeeeeeeeeeee..eeeeeeee........eeee...eeeeeeee..........ee....hhhhhh.........eeeeeee....eeeeee....hhhhhhhh..eeeeeee.........eeeeeeeeee.........eee..hhhhhhhh...eeee.......hhhhheeee...eeeeeeeeee....eeeeee.....eee.hhh..ee....eeee...eeeeeeee....eeeeeee..hhhhhhhh.eeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1kbw F  13 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGALTGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 314
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Fold: Cupredoxin-like (545)
(-)
Superfamily: Cupredoxins (543)
(-)
Family: Multidomain cupredoxins (146)
(-)
Protein domain: Nitrite reductase, NIR (79)
(-)
Neisseria gonorrhoeae, AniA [TaxId: 485] (2)
1ad1kbwa1A:13-163
1bd1kbwa2A:164-314
1cd1kbwb1B:13-163
1dd1kbwb2B:164-314
1ed1kbwc1C:13-163
1fd1kbwc2C:164-314
1gd1kbwd1D:13-163
1hd1kbwd2D:164-314
1id1kbwe1E:13-163
1jd1kbwe2E:164-314
1kd1kbwf1F:13-163
1ld1kbwf2F:164-314

(-) CATH Domains  (1, 12)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Sandwich (5577)
(-)
Topology: Immunoglobulin-like (3897)
(-)
Homologous Superfamily: Cupredoxins - blue copper proteins (420)
(-)
Neisseria gonorrhoeae. Organism_taxid: 485. (2)
1a1kbwA01A:13-156
1b1kbwE01E:13-156
1c1kbwF01F:13-156
1d1kbwA02A:161-314
1e1kbwB02B:161-314
1f1kbwC02C:161-314
1g1kbwD02D:161-314
1h1kbwE02E:161-314
1i1kbwF02F:161-314
1j1kbwB01B:13-156
1k1kbwC01C:13-156
1l1kbwD01D:13-156

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: CU_oxidase (192)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (ANIA_NEIGO | Q02219)
molecular function
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0050421    nitrite reductase (NO-forming) activity    Catalysis of the reaction: nitric oxide + H2O + ferricytochrome c = nitrite + ferrocytochrome c + 2 H+.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0006807    nitrogen compound metabolic process    The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ANIA_NEIGO | Q02219: 1kbv

(-) Related Entries Specified in the PDB File

1kbv NITRITE-SOAKED CRYSTAL STRUCTURE OF THE SOLUBLE DOMAIN OF ANIA FROM NEISSERIA GONORRHOEAE