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(-) Description

Title :  NITRITE-SOAKED CRYSTAL STRUCTURE OF THE SOLUBLE DOMAIN OF ANIA FROM NEISSERIA GONORRHOEAE
 
Authors :  M. J. Boulanger, M. E. P. Murphy
Date :  06 Nov 01  (Deposition) - 05 Dec 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Ania[No2-], Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Boulanger, M. E. Murphy
Crystal Structure Of The Soluble Domain Of The Major Anaerobically Induced Outer Membrane Protein (Ania) From Pathogenic Neisseria: A New Class Of Copper-Containing Nitrite Reductases.
J. Mol. Biol. V. 315 1111 2002
PubMed-ID: 11827480  |  Reference-DOI: 10.1006/JMBI.2001.5251
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MAJOR OUTER MEMBRANE PROTEIN PAN 1
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: HMS174
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 42-364, SOLUBLE DOMAIN
    Gene: ANIA
    Organism Scientific: NEISSERIA GONORRHOEAE
    Organism Taxid: 485
    Synonym: ANIA

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 18)

Asymmetric Unit (2, 18)
No.NameCountTypeFull Name
1CU12Ligand/IonCOPPER (II) ION
2NO26Ligand/IonNITRITE ION
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION
2NO23Ligand/IonNITRITE ION
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1CU-1Ligand/IonCOPPER (II) ION
2NO23Ligand/IonNITRITE ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:94 , CYS A:135 , HIS A:143 , MET A:148BINDING SITE FOR RESIDUE CU A 501
02AC2SOFTWAREHIS A:99 , HIS A:134 , NO2 A:2504 , HIS B:289BINDING SITE FOR RESIDUE CU A 502
03AC3SOFTWAREASP A:97 , HIS A:99 , HIS A:134 , CU A:502 , HOH A:2862 , HIS B:240 , ILE B:242 , HIS B:289BINDING SITE FOR RESIDUE NO2 A 2504
04AC4SOFTWAREHIS B:94 , CYS B:135 , HIS B:143 , MET B:148BINDING SITE FOR RESIDUE CU B 501
05AC5SOFTWAREHIS B:99 , HIS B:134 , HIS C:289 , NO2 C:2505BINDING SITE FOR RESIDUE CU B 502
06AC6SOFTWAREASP B:97 , HIS B:99 , HIS B:134 , CU B:502 , HIS C:240 , ILE C:242 , HIS C:289 , HOH C:2745BINDING SITE FOR RESIDUE NO2 C 2505
07AC7SOFTWAREHIS C:94 , CYS C:135 , HIS C:143 , MET C:148BINDING SITE FOR RESIDUE CU C 501
08AC8SOFTWAREHIS A:289 , NO2 A:2506 , HIS C:99 , HIS C:134BINDING SITE FOR RESIDUE CU C 502
09AC9SOFTWAREHIS A:240 , ILE A:242 , HIS A:289 , HOH A:2864 , ASP C:97 , HIS C:99 , HIS C:134 , CU C:502BINDING SITE FOR RESIDUE NO2 A 2506
10BC1SOFTWAREHIS D:94 , CYS D:135 , HIS D:143 , MET D:148BINDING SITE FOR RESIDUE CU D 501
11BC2SOFTWAREHIS D:99 , HIS D:134 , HIS E:289 , NO2 E:2507BINDING SITE FOR RESIDUE CU D 502
12BC3SOFTWAREASP D:97 , HIS D:99 , HIS D:134 , CU D:502 , HOH D:2770 , HIS E:240 , ILE E:242 , HIS E:289BINDING SITE FOR RESIDUE NO2 E 2507
13BC4SOFTWAREHIS E:94 , CYS E:135 , HIS E:143 , MET E:148BINDING SITE FOR RESIDUE CU E 501
14BC5SOFTWAREHIS E:99 , HIS E:134 , HIS F:289 , NO2 F:2508BINDING SITE FOR RESIDUE CU E 502
15BC6SOFTWAREASP E:97 , HIS E:99 , HIS E:134 , CU E:502 , HIS F:240 , ILE F:242 , HIS F:289 , HOH F:2803BINDING SITE FOR RESIDUE NO2 F 2508
16BC7SOFTWAREHIS F:94 , CYS F:135 , HIS F:143 , MET F:148BINDING SITE FOR RESIDUE CU F 501
17BC8SOFTWAREHIS D:289 , NO2 D:2509 , HIS F:99 , HIS F:134BINDING SITE FOR RESIDUE CU F 502
18BC9SOFTWAREHIS D:240 , ILE D:242 , HIS D:289 , ASP F:97 , HIS F:99 , HIS F:134 , CU F:502BINDING SITE FOR RESIDUE NO2 D 2509

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1KBV)

(-) Cis Peptide Bonds  (20, 20)

Asymmetric Unit
No.Residues
1Val A:67 -Pro A:68
2Ala A:138 -Pro A:139
3Gly A:232 -Pro A:233
4Val B:67 -Pro B:68
5Ala B:138 -Pro B:139
6Gly B:232 -Pro B:233
7Val C:67 -Pro C:68
8Ala C:138 -Pro C:139
9Gly C:232 -Pro C:233
10Ala D:24 -Pro D:25
11Val D:67 -Pro D:68
12Ala D:138 -Pro D:139
13Gly D:232 -Pro D:233
14Ala E:24 -Pro E:25
15Val E:67 -Pro E:68
16Ala E:138 -Pro E:139
17Gly E:232 -Pro E:233
18Val F:67 -Pro F:68
19Ala F:138 -Pro F:139
20Gly F:232 -Pro F:233

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1KBV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1KBV)

(-) Exons   (0, 0)

(no "Exon" information available for 1KBV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:302
 aligned with ANIA_NEIGO | Q02219 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:302
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352  
           ANIA_NEIGO    53 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGSIAGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGSYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 354
               SCOP domains d1kbva1 A:13-163 Nitrite reductase, NIR                                                                                                                d1kbva2 A:164-314 Nitrite reductase, NIR                                                                                                                SCOP domains
               CATH domains 1kbvA01 A:13-156 Cupredoxins -  blue copper proteins                                                                                            ----1kbvA02 A:161-314 Cupredoxins -  blue copper proteins                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...................eeeeeeeeeeeeeeee..eeeeeeee........eeee...eeeeeeee..........ee....hhhhhh........eeeeeeee....eeeeee....hhhhhhhh..eeeeeee.........eeeeeeeeee.........eee..hhhhhhhh...eeee.......hhhhheeee..eeeeeeeeeee....eeeeee.....eee.hhh..ee....eeee...eeeeeeeee...eeeeeee..hhhhhhh..eeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1kbv A  13 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGALTGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 314
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312  


Chain B from PDB  Type:PROTEIN  Length:302
 aligned with ANIA_NEIGO | Q02219 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:302
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352  
           ANIA_NEIGO    53 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGSIAGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGSYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 354
               SCOP domains d1kbvb1 B:13-163 Nitrite reductase, NIR                                                                                                                d1kbvb2 B:164-314 Nitrite reductase, NIR                                                                                                                SCOP domains
               CATH domains 1kbvB01 B:13-156 Cupredoxins -  blue copper proteins                                                                                            ----1kbvB02 B:161-314 Cupredoxins -  blue copper proteins                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...................eeeeeeeeeeeeeeee..eeeeeeee........eeee...eeeeeeee..........ee....hhhhhh.........eeeeeee....eeeeee....hhhhhhhh..eeeeeee.........eeeeeeeeee.........eee..hhhhhhhh...eeee.......hhhhheeee...eeeeeeee......eeeee......eee.hhh..ee.....eee...eeeeeeee....eeeeeee..hhhhhhh..eeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1kbv B  13 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGALTGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 314
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312  


Chain C from PDB  Type:PROTEIN  Length:302
 aligned with ANIA_NEIGO | Q02219 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:302
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352  
           ANIA_NEIGO    53 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGSIAGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGSYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 354
               SCOP domains d1kbvc1 C:13-163 Nitrite reductase, NIR                                                                                                                d1kbvc2 C:164-314 Nitrite reductase, NIR                                                                                                                SCOP domains
               CATH domains 1kbvC01 C:13-156 Cupredoxins -  blue copper proteins                                                                                            ----1kbvC02 C:161-314 Cupredoxins -  blue copper proteins                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...................eeeeeeeeeeeeeeee..eeeeeeee........eeee...eeeeeeee..........ee....hhhhhhhhhh....eeeeeeee....eeeeee....hhhhhhhh..eeeeeee.........eeeeeeeeee.........eee..hhhhhhhh...eeee.......hhhhheeee..eeeeeeeeeee....eeeeee.....eee.hhh..ee....eeee...eeeeeeeee...eeeeeee..hhhhhhh..eeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1kbv C  13 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGALTGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 314
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312  


Chain D from PDB  Type:PROTEIN  Length:302
 aligned with ANIA_NEIGO | Q02219 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:302
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352  
           ANIA_NEIGO    53 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGSIAGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGSYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 354
               SCOP domains d1kbvd1 D:13-163 Nitrite reductase, NIR                                                                                                                d1kbvd2 D:164-314 Nitrite reductase, NIR                                                                                                                SCOP domains
               CATH domains 1kbvD01 D:13-156 Cupredoxins -  blue copper proteins                                                                                            ----1kbvD02 D:161-314 Cupredoxins -  blue copper proteins                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...................eeeeeeeeeeeeeeee..eeeeeeee........eeee...eeeeeeee..........ee....hhhhhh.........eeeeeee....eeeeee....hhhhhhhh..eeeeeee.........eeeeeeeeee.........ee...hhhhhhhh...eeee.......hhhhheeee..eeeeeeeeeee....eeeee......eee.hhh..ee....eeee...eeeeeeeee...eeeeeee..hhhhhhh..eeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1kbv D  13 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGALTGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 314
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312  


Chain E from PDB  Type:PROTEIN  Length:302
 aligned with ANIA_NEIGO | Q02219 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:302
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352  
           ANIA_NEIGO    53 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGSIAGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGSYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 354
               SCOP domains d1kbve1 E:13-163 Nitrite reductase, NIR                                                                                                                d1kbve2 E:164-314 Nitrite reductase, NIR                                                                                                                SCOP domains
               CATH domains 1kbvE01 E:13-156 Cupredoxins -  blue copper proteins                                                                                            ----1kbvE02 E:161-314 Cupredoxins -  blue copper proteins                                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...................eeeeeeeeeeeeeeee..eeeeeeee........eeee...eeeeeeee..........ee....hhhhhh.........eeeeeee....eeeeee....hhhhhhhh..eeeeeee.........eeeeeeeeee.........ee...hhhhhhhh...eeee.......hhhhheeee..eeeeeeeeeee....eeeee......eee.hhh..ee....eeee...eeeeeeeee...eeeeeee..hhhhhhhh.eeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1kbv E  13 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGALTGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 314
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312  


Chain F from PDB  Type:PROTEIN  Length:302
 aligned with ANIA_NEIGO | Q02219 from UniProtKB/Swiss-Prot  Length:392

    Alignment length:302
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352  
           ANIA_NEIGO    53 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGSIAGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGSYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 354
               SCOP domains d1kbvf1 F:13-163 Nitrite reductase, NIR                                                                                                                d1kbvf2 F:164-314 Nitrite reductase, NIR                                                                                                                SCOP domains
               CATH domains 1kbvF01 F:13-156 Cupredoxins -  blue copper proteins                                                                                            ----1kbvF02 F:161-314 Cupredoxins -  blue copper proteins                                                                                                      CATH domains
           Pfam domains (1) -------------------------------Cu-oxidase_3-1kbvF01 F:44-159                                                                                       ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -------------------------------Cu-oxidase_3-1kbvF02 F:44-159                                                                                       ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) -------------------------------Cu-oxidase_3-1kbvF03 F:44-159                                                                                       ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) -------------------------------Cu-oxidase_3-1kbvF04 F:44-159                                                                                       ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) -------------------------------Cu-oxidase_3-1kbvF05 F:44-159                                                                                       ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) -------------------------------Cu-oxidase_3-1kbvF06 F:44-159                                                                                       ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (6)
         Sec.struct. author ...eee...................eeeeeeeeeeeeeeee..eeeeeeee........eeee...eeeeeeee..........ee....hhhhhh.........eeeeeee....eeeeee....hhhhhhhh..eeeeeee.........eeeeeeeeee.........ee...hhhhhhh....eeee.......hhhhheeee..eeeeeeeeeee....eeeeee.....eee.hhh..ee....eeee...eeeeeeeee...eeeeeee..hhhhhhh..eeeeeee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1kbv F  13 ELPVIDAVTTHAPEVPPAIDRDYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGGGAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGLPKVDKEFYIVQGDFYTKGKKGAQGLQPFDMDKAVAEQPEYVVFNGHVGALTGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDKVYVEGGKLINENVQSTIVPAGGSAIVEFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAENPEIM 314
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Fold: Cupredoxin-like (545)
(-)
Superfamily: Cupredoxins (543)
(-)
Family: Multidomain cupredoxins (146)
(-)
Protein domain: Nitrite reductase, NIR (79)
(-)
Neisseria gonorrhoeae, AniA [TaxId: 485] (2)
1ad1kbva1A:13-163
1bd1kbva2A:164-314
1cd1kbvf1F:13-163
1dd1kbvf2F:164-314
1ed1kbvb1B:13-163
1fd1kbvb2B:164-314
1gd1kbvc1C:13-163
1hd1kbvc2C:164-314
1id1kbvd1D:13-163
1jd1kbvd2D:164-314
1kd1kbve1E:13-163
1ld1kbve2E:164-314

(-) CATH Domains  (1, 12)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Sandwich (5577)
(-)
Topology: Immunoglobulin-like (3897)
(-)
Homologous Superfamily: Cupredoxins - blue copper proteins (420)
(-)
Neisseria gonorrhoeae. Organism_taxid: 485. (2)
1a1kbvA01A:13-156
1b1kbvB01B:13-156
1c1kbvA02A:161-314
1d1kbvB02B:161-314
1e1kbvC02C:161-314
1f1kbvD02D:161-314
1g1kbvE02E:161-314
1h1kbvF02F:161-314
1i1kbvC01C:13-156
1j1kbvD01D:13-156
1k1kbvE01E:13-156
1l1kbvF01F:13-156

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: CU_oxidase (192)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (ANIA_NEIGO | Q02219)
molecular function
    GO:0005507    copper ion binding    Interacting selectively and non-covalently with copper (Cu) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0050421    nitrite reductase (NO-forming) activity    Catalysis of the reaction: nitric oxide + H2O + ferricytochrome c = nitrite + ferrocytochrome c + 2 H+.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0006807    nitrogen compound metabolic process    The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0009279    cell outer membrane    A lipid bilayer that forms the outermost membrane of the cell envelope; enriched in polysaccharide and protein; the outer leaflet of the membrane contains specific lipopolysaccharide structures.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ANIA_NEIGO | Q02219: 1kbw

(-) Related Entries Specified in the PDB File

1kbw CRYSTAL STRUCTURE OF THE SOLUBLE DOMAIN OF ANIA FROM NEISSERIA GONORRHOEAE