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(-) Description

Title :  COMPLEX OF DC-SIGN AND GLCNAC2MAN3
 
Authors :  H. Feinberg, D. A. Mitchell, K. Drickamer, W. I. Weis
Date :  29 Oct 01  (Deposition) - 21 Dec 01  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J
Keywords :  C-Type Lectin, Protein Carbohydrate Complex, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  H. Feinberg, D. A. Mitchell, K. Drickamer, W. I. Weis
Structural Basis For Selective Recognition Of Oligosaccharides By Dc-Sign And Dc-Signr.
Science V. 294 2163 2001
PubMed-ID: 11739956  |  Reference-DOI: 10.1126/SCIENCE.1066371

(-) Compounds

Molecule 1 - MDC-SIGN1B TYPE I ISOFORM
    ChainsA, B, C, D, E, F, G, H, I, J
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentCARBOHYDRATE RECOGNITION DOMAIN
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymDC-SIGN RECEPTOR (DENDRITIC CELL-SPECIFIC ICAM-3 GRABBING NONINTEGRIN)

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric/Biological Unit ABCDEFGHIJ

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 55)

Asymmetric/Biological Unit (3, 55)
No.NameCountTypeFull Name
1CA30Ligand/IonCALCIUM ION
2MAN15Ligand/IonALPHA-D-MANNOSE
3NAG10Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (55, 55)

Asymmetric Unit (55, 55)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREMAN A:2 , ASN A:349 , VAL A:351 , GLU J:347 , ASN J:349 , GLU J:354 , ASN J:365 , ASP J:366 , ASP J:367 , CA J:1302BINDING SITE FOR RESIDUE NAG A 1
02AC2SOFTWARENAG A:1 , MAN A:3 , GLU A:347 , ASN A:349 , GLU A:354 , ASN A:365 , ASP A:366 , ASP A:367 , CA A:406BINDING SITE FOR RESIDUE MAN A 2
03AC3SOFTWAREMAN A:2 , MAN A:4 , PHE A:313BINDING SITE FOR RESIDUE MAN A 3
04AC4SOFTWAREMAN A:3 , NAG A:5 , SER A:360 , GLY A:361 , PHE J:313BINDING SITE FOR RESIDUE MAN A 4
05AC5SOFTWAREMAN A:4 , SER A:308 , ASN A:311 , GLY A:361BINDING SITE FOR RESIDUE NAG A 5
06AC6SOFTWAREMAN C:2 , VAL C:351 , GLU I:347 , ASN I:349 , GLU I:354 , ASN I:365 , ASP I:366 , ASP I:367 , CA I:1202BINDING SITE FOR RESIDUE NAG C 1
07AC7SOFTWARENAG C:1 , MAN C:3 , GLU C:347 , ASN C:349 , GLU C:354 , ASN C:365 , ASP C:366 , CA C:602 , HOH C:617BINDING SITE FOR RESIDUE MAN C 2
08AC8SOFTWAREMAN C:2 , MAN C:4 , PHE C:313 , HOH C:608 , HOH C:621BINDING SITE FOR RESIDUE MAN C 3
09AC9SOFTWAREMAN C:3 , NAG C:5 , ASN C:344 , SER C:360 , GLY C:361 , HOH C:625 , PHE I:313BINDING SITE FOR RESIDUE MAN C 4
10BC1SOFTWAREMAN C:4 , SER C:308 , ASN C:311 , GLY C:361 , HOH C:606BINDING SITE FOR RESIDUE NAG C 5
11BC2SOFTWAREMAN D:2 , ARG D:345 , ASN D:349 , VAL D:351 , HOH D:715 , HOH D:731 , GLU F:347 , ASN F:349 , GLU F:354 , ASN F:365 , ASP F:366 , CA F:902BINDING SITE FOR RESIDUE NAG D 1
12BC3SOFTWARENAG D:1 , MAN D:3 , GLU D:347 , ASN D:349 , GLU D:354 , ASN D:365 , ASP D:366 , CA D:702 , HOH D:710BINDING SITE FOR RESIDUE MAN D 2
13BC4SOFTWAREMAN D:2 , MAN D:4 , HOH D:732BINDING SITE FOR RESIDUE MAN D 3
14BC5SOFTWAREMAN D:3 , NAG D:5 , SER D:360 , GLY D:361 , HOH D:716 , HOH D:735 , PHE F:313BINDING SITE FOR RESIDUE MAN D 4
15BC6SOFTWAREMAN D:4 , SER D:308 , ASN D:311 , GLY D:361 , HOH D:708BINDING SITE FOR RESIDUE NAG D 5
16BC7SOFTWAREGLU B:347 , ASN B:349 , GLU B:354 , ASN B:365 , ASP B:366 , CA B:502 , MAN E:2 , HOH E:237 , ASN E:349 , VAL E:351BINDING SITE FOR RESIDUE NAG E 1
17BC8SOFTWARENAG E:1 , MAN E:3 , GLU E:347 , ASN E:349 , GLU E:354 , ASN E:365 , ASP E:366 , CA E:802BINDING SITE FOR RESIDUE MAN E 2
18BC9SOFTWAREMAN E:2 , MAN E:4 , HOH E:31 , HOH E:153 , HOH E:170 , PHE E:313BINDING SITE FOR RESIDUE MAN E 3
19CC1SOFTWAREMAN E:3 , NAG E:5 , HOH E:37 , HOH E:245 , ASN E:344 , SER E:360 , GLY E:361BINDING SITE FOR RESIDUE MAN E 4
20CC2SOFTWAREMAN E:4 , HOH E:162 , SER E:308 , ASN E:311 , GLY E:361BINDING SITE FOR RESIDUE NAG E 5
21CC3SOFTWAREGLU G:347 , ASN G:349 , GLU G:354 , ASN G:365 , ASP G:366 , CA G:1002 , MAN H:2 , HOH H:156 , ASN H:349 , VAL H:351BINDING SITE FOR RESIDUE NAG H 1
22CC4SOFTWARENAG H:1 , MAN H:3 , HOH H:132 , GLU H:347 , ASN H:349 , GLU H:354 , ASN H:365 , ASP H:366 , CA H:1102BINDING SITE FOR RESIDUE MAN H 2
23CC5SOFTWAREMAN H:2 , MAN H:4 , HOH H:198BINDING SITE FOR RESIDUE MAN H 3
24CC6SOFTWAREPHE G:313 , MAN H:3 , NAG H:5 , HOH H:75 , ASN H:344 , SER H:360 , GLY H:361BINDING SITE FOR RESIDUE MAN H 4
25CC7SOFTWAREMAN H:4 , ASN H:311 , ARG H:312 , GLY H:361BINDING SITE FOR RESIDUE NAG H 5
26CC8SOFTWAREASP A:320 , GLU A:324 , ASN A:350 , GLU A:354 , ASP A:355 , HOH A:408BINDING SITE FOR RESIDUE CA A 405
27CC9SOFTWAREMAN A:2 , GLU A:347 , ASN A:349 , GLU A:354 , ASN A:365 , ASP A:366BINDING SITE FOR RESIDUE CA A 406
28DC1SOFTWAREGLU A:324 , GLU A:353 , ASP A:355 , HOH A:409BINDING SITE FOR RESIDUE CA A 407
29DC2SOFTWAREASP B:320 , GLU B:324 , ASN B:350 , GLU B:354 , ASP B:355 , HOH B:504BINDING SITE FOR RESIDUE CA B 501
30DC3SOFTWAREGLU B:347 , ASN B:349 , GLU B:354 , ASN B:365 , ASP B:366 , NAG E:1BINDING SITE FOR RESIDUE CA B 502
31DC4SOFTWAREGLU B:324 , GLU B:353 , ASP B:355 , HOH B:505 , HOH B:506 , HOH B:507BINDING SITE FOR RESIDUE CA B 503
32DC5SOFTWAREASP C:320 , GLU C:324 , ASN C:350 , GLU C:354 , ASP C:355 , HOH C:604BINDING SITE FOR RESIDUE CA C 601
33DC6SOFTWAREMAN C:2 , GLU C:347 , ASN C:349 , GLU C:354 , ASN C:365 , ASP C:366BINDING SITE FOR RESIDUE CA C 602
34DC7SOFTWAREGLU C:324 , GLU C:353 , ASP C:355 , HOH C:605BINDING SITE FOR RESIDUE CA C 603
35DC8SOFTWAREASP D:320 , GLU D:324 , ASN D:350 , GLU D:354 , ASP D:355 , HOH D:704BINDING SITE FOR RESIDUE CA D 701
36DC9SOFTWAREMAN D:2 , GLU D:347 , ASN D:349 , GLU D:354 , ASN D:365 , ASP D:366BINDING SITE FOR RESIDUE CA D 702
37EC1SOFTWAREGLU D:324 , GLU D:353 , ASP D:355 , HOH D:705 , HOH D:706 , HOH D:707BINDING SITE FOR RESIDUE CA D 703
38EC2SOFTWAREHOH E:15 , ASP E:320 , GLU E:324 , ASN E:350 , GLU E:354 , ASP E:355BINDING SITE FOR RESIDUE CA E 801
39EC3SOFTWAREMAN E:2 , GLU E:347 , ASN E:349 , GLU E:354 , ASN E:365 , ASP E:366BINDING SITE FOR RESIDUE CA E 802
40EC4SOFTWAREHOH E:16 , HOH E:25 , HOH E:26 , GLU E:324 , GLU E:353 , ASP E:355BINDING SITE FOR RESIDUE CA E 803
41EC5SOFTWAREHOH F:17 , ASP F:320 , GLU F:324 , ASN F:350 , GLU F:354 , ASP F:355BINDING SITE FOR RESIDUE CA F 901
42EC6SOFTWARENAG D:1 , GLU F:347 , ASN F:349 , GLU F:354 , ASN F:365 , ASP F:366BINDING SITE FOR RESIDUE CA F 902
43EC7SOFTWAREHOH F:18 , HOH F:27 , GLU F:324 , GLU F:353 , ASP F:355BINDING SITE FOR RESIDUE CA F 903
44EC8SOFTWAREHOH G:19 , ASP G:320 , GLU G:324 , ASN G:350 , GLU G:354 , ASP G:355BINDING SITE FOR RESIDUE CA G 1001
45EC9SOFTWAREGLU G:347 , ASN G:349 , GLU G:354 , ASN G:365 , ASP G:366 , NAG H:1BINDING SITE FOR RESIDUE CA G 1002
46FC1SOFTWAREHOH G:20 , GLU G:324 , GLU G:353 , ASP G:355BINDING SITE FOR RESIDUE CA G 1003
47FC2SOFTWAREHOH H:7 , ASP H:320 , GLU H:324 , ASN H:350 , GLU H:354 , ASP H:355BINDING SITE FOR RESIDUE CA H 1101
48FC3SOFTWAREMAN H:2 , GLU H:347 , ASN H:349 , GLU H:354 , ASN H:365 , ASP H:366BINDING SITE FOR RESIDUE CA H 1102
49FC4SOFTWAREHOH H:8 , HOH H:28 , GLU H:324 , GLU H:353 , ASP H:355BINDING SITE FOR RESIDUE CA H 1103
50FC5SOFTWAREASP I:320 , GLU I:324 , ASN I:350 , GLU I:354 , ASP I:355 , HOH I:1204BINDING SITE FOR RESIDUE CA I 1201
51FC6SOFTWARENAG C:1 , GLU I:347 , ASN I:349 , GLU I:354 , ASN I:365 , ASP I:366BINDING SITE FOR RESIDUE CA I 1202
52FC7SOFTWAREGLU I:324 , GLU I:353 , ASP I:355 , HOH I:1205 , HOH I:1206BINDING SITE FOR RESIDUE CA I 1203
53FC8SOFTWAREHOH J:11 , ASP J:320 , GLU J:324 , ASN J:350 , GLU J:354 , ASP J:355BINDING SITE FOR RESIDUE CA J 1301
54FC9SOFTWARENAG A:1 , GLU J:347 , ASN J:349 , GLU J:354 , ASN J:365 , ASP J:366BINDING SITE FOR RESIDUE CA J 1302
55GC1SOFTWAREHOH J:12 , GLU J:324 , GLU J:353 , ASP J:355BINDING SITE FOR RESIDUE CA J 1303

(-) SS Bonds  (31, 31)

Asymmetric/Biological Unit
No.Residues
1A:256 -A:267
2A:284 -A:377
3A:356 -A:369
4B:256 -B:267
5B:284 -B:377
6B:356 -B:369
7C:256 -C:267
8C:284 -C:377
9C:356 -C:369
10D:253 -D:384
11D:256 -D:267
12D:284 -D:377
13D:356 -D:369
14E:256 -E:267
15E:284 -E:377
16E:356 -E:369
17F:256 -F:267
18F:284 -F:377
19F:356 -F:369
20G:256 -G:267
21G:284 -G:377
22G:356 -G:369
23H:256 -H:267
24H:284 -H:377
25H:356 -H:369
26I:256 -I:267
27I:284 -I:377
28I:356 -I:369
29J:256 -J:267
30J:284 -J:377
31J:356 -J:369

(-) Cis Peptide Bonds  (10, 10)

Asymmetric/Biological Unit
No.Residues
1Glu A:347 -Pro A:348
2Glu B:347 -Pro B:348
3Glu C:347 -Pro C:348
4Glu D:347 -Pro D:348
5Glu E:347 -Pro E:348
6Glu F:347 -Pro F:348
7Glu G:347 -Pro G:348
8Glu H:347 -Pro H:348
9Glu I:347 -Pro I:348
10Glu J:347 -Pro J:348

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 9)

Asymmetric/Biological Unit (1, 9)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_050105A382SCD209_HUMANPolymorphism11465393A/B/C/D/E/F/G/I/JA382S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 20)

Asymmetric/Biological Unit (2, 20)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1C_TYPE_LECTIN_2PS50041 C-type lectin domain profile.CD209_HUMAN263-378
 
 
 
 
 
 
 
 
 
  10A:263-378
B:263-378
C:263-378
D:263-378
E:263-378
F:263-378
G:263-378
H:263-378
I:263-378
J:263-378
2C_TYPE_LECTIN_1PS00615 C-type lectin domain signature.CD209_HUMAN356-377
 
 
 
 
 
 
 
 
 
  10A:356-377
B:356-377
C:356-377
D:356-377
E:356-377
F:356-377
G:356-377
H:356-377
I:356-377
J:356-377

(-) Exons   (3, 30)

Asymmetric/Biological Unit (3, 30)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000003155991ENSE00001352512chr19:7812464-7812352113CD209_HUMAN1-16160--
1.2cENST000003155992cENSE00001202067chr19:7812251-781219260CD209_HUMAN16-36210--
1.3ENST000003155993ENSE00000671477chr19:7811417-781134672CD209_HUMAN36-60250--
1.4cENST000003155994cENSE00001724938chr19:7810973-7810404570CD209_HUMAN60-2501910--
1.5ENST000003155995ENSE00001689133chr19:7809978-7809827152CD209_HUMAN250-3005110A:255-300
B:255-300
C:255-300
D:253-300
E:255-300
F:255-300
G:255-300
H:255-300
I:255-300
J:255-300
46
46
46
48
46
46
46
46
46
46
1.6aENST000003155996aENSE00001747548chr19:7809105-7808993113CD209_HUMAN301-3383810A:301-338
B:301-338
C:301-338
D:301-338
E:301-338
F:301-338
G:301-338
H:301-338
I:301-338
J:301-338
38
38
38
38
38
38
38
38
38
38
1.7ENST000003155997ENSE00001352516chr19:7808126-78048793248CD209_HUMAN338-4046710A:338-382
B:338-382
C:338-382
D:338-384
E:338-382
F:338-382
G:338-382
H:338-381
I:338-382
J:338-382
45
45
45
47
45
45
45
44
45
45

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:128
 aligned with CD209_HUMAN | Q9NNX6 from UniProtKB/Swiss-Prot  Length:404

    Alignment length:128
                                   264       274       284       294       304       314       324       334       344       354       364       374        
          CD209_HUMAN   255 PCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAA 382
               SCOP domains d1k9ia_ A: DC-SIGN (dendritic cell-specific ICAM-3 grabbing nonintegrin)                                                         SCOP domains
               CATH domains 1k9iA00 A:255-382 Mannose-Binding Protein A, subunit A                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeee.....hhhhhhhhhhhh..ee.....hhhhhhhhhhhhhhh..eeeeee........ee........hhhhhh............eeeee..eeeee........eeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------S SAPs(SNPs)
                PROSITE (1) --------C_TYPE_LECTIN_2  PDB: A:263-378 UniProt: 263-378                                                                    ---- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1       ----- PROSITE (2)
           Transcript 1 (1) Exon 1.5  PDB: A:255-300 UniProt: 250-300     Exon 1.6a  PDB: A:301-338             -------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------Exon 1.7  PDB: A:338-382 UniProt: 338-404     Transcript 1 (2)
                 1k9i A 255 PCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAA 382
                                   264       274       284       294       304       314       324       334       344       354       364       374        

Chain B from PDB  Type:PROTEIN  Length:128
 aligned with CD209_HUMAN | Q9NNX6 from UniProtKB/Swiss-Prot  Length:404

    Alignment length:128
                                   264       274       284       294       304       314       324       334       344       354       364       374        
          CD209_HUMAN   255 PCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAA 382
               SCOP domains d1k9ib_ B: DC-SIGN (dendritic cell-specific ICAM-3 grabbing nonintegrin)                                                         SCOP domains
               CATH domains 1k9iB00 B:255-382 Mannose-Binding Protein A, subunit A                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeee.....hhhhhhhhhhh...ee....hhhhhhhhhhhhhh....eeeeee........ee......hhhhhhhh............eeeee..eeeee......eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------S SAPs(SNPs)
                PROSITE (1) --------C_TYPE_LECTIN_2  PDB: B:263-378 UniProt: 263-378                                                                    ---- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1       ----- PROSITE (2)
           Transcript 1 (1) Exon 1.5  PDB: B:255-300 UniProt: 250-300     Exon 1.6a  PDB: B:301-338             -------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------Exon 1.7  PDB: B:338-382 UniProt: 338-404     Transcript 1 (2)
                 1k9i B 255 PCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAA 382
                                   264       274       284       294       304       314       324       334       344       354       364       374        

Chain C from PDB  Type:PROTEIN  Length:128
 aligned with CD209_HUMAN | Q9NNX6 from UniProtKB/Swiss-Prot  Length:404

    Alignment length:128
                                   264       274       284       294       304       314       324       334       344       354       364       374        
          CD209_HUMAN   255 PCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAA 382
               SCOP domains d1k9ic_ C: DC-SIGN (dendritic cell-specific ICAM-3 grabbing nonintegrin)                                                         SCOP domains
               CATH domains 1k9iC00 C:255-382 Mannose-Binding Protein A, subunit A                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeee.....hhhhhhhhhhh...ee....hhhhhhhhhhhhhhh...eeeeee........ee.........hhhhh............eeeee..eeeee......eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------S SAPs(SNPs)
                PROSITE (1) --------C_TYPE_LECTIN_2  PDB: C:263-378 UniProt: 263-378                                                                    ---- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1       ----- PROSITE (2)
           Transcript 1 (1) Exon 1.5  PDB: C:255-300 UniProt: 250-300     Exon 1.6a  PDB: C:301-338             -------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------Exon 1.7  PDB: C:338-382 UniProt: 338-404     Transcript 1 (2)
                 1k9i C 255 PCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAA 382
                                   264       274       284       294       304       314       324       334       344       354       364       374        

Chain D from PDB  Type:PROTEIN  Length:132
 aligned with CD209_HUMAN | Q9NNX6 from UniProtKB/Swiss-Prot  Length:404

    Alignment length:132
                                   262       272       282       292       302       312       322       332       342       352       362       372       382  
          CD209_HUMAN   253 CHPCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAASC 384
               SCOP domains d1k9id_ D: DC-SIGN (dendritic cell-specific ICAM-3 grabbing nonintegrin)                                                             SCOP domains
               CATH domains 1k9iD00 D:253-384 Mannose-Binding Protein A, subunit A                                                                               CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........eee..eeeee.....hhhhhhhhhhhh..ee....hhhhhhhhhhhhhhh...eeeeee........ee......hhhhhhhh............eeeee..eeeee......eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------S-- SAPs(SNPs)
                PROSITE (1) ----------C_TYPE_LECTIN_2  PDB: D:263-378 UniProt: 263-378                                                                    ------ PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1       ------- PROSITE (2)
           Transcript 1 (1) Exon 1.5  PDB: D:253-300 UniProt: 250-300       Exon 1.6a  PDB: D:301-338             ---------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------Exon 1.7  PDB: D:338-384 UniProt: 338-404       Transcript 1 (2)
                 1k9i D 253 CHPCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAASC 384
                                   262       272       282       292       302       312       322       332       342       352       362       372       382  

Chain E from PDB  Type:PROTEIN  Length:128
 aligned with CD209_HUMAN | Q9NNX6 from UniProtKB/Swiss-Prot  Length:404

    Alignment length:128
                                   264       274       284       294       304       314       324       334       344       354       364       374        
          CD209_HUMAN   255 PCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAA 382
               SCOP domains d1k9ie_ E: DC-SIGN (dendritic cell-specific ICAM-3 grabbing nonintegrin)                                                         SCOP domains
               CATH domains 1k9iE00 E:255-382 Mannose-Binding Protein A, subunit A                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeee.....hhhhhhhhhhh...ee....hhhhhhhhhhhhhhh...eeeeeeeeee..eeee......hhhhhhhh............eeeee..eeeee......eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------S SAPs(SNPs)
                PROSITE (1) --------C_TYPE_LECTIN_2  PDB: E:263-378 UniProt: 263-378                                                                    ---- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1       ----- PROSITE (2)
           Transcript 1 (1) Exon 1.5  PDB: E:255-300 UniProt: 250-300     Exon 1.6a  PDB: E:301-338             -------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------Exon 1.7  PDB: E:338-382 UniProt: 338-404     Transcript 1 (2)
                 1k9i E 255 PCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAA 382
                                   264       274       284       294       304       314       324       334       344       354       364       374        

Chain F from PDB  Type:PROTEIN  Length:128
 aligned with CD209_HUMAN | Q9NNX6 from UniProtKB/Swiss-Prot  Length:404

    Alignment length:128
                                   264       274       284       294       304       314       324       334       344       354       364       374        
          CD209_HUMAN   255 PCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAA 382
               SCOP domains d1k9if_ F: DC-SIGN (dendritic cell-specific ICAM-3 grabbing nonintegrin)                                                         SCOP domains
               CATH domains 1k9iF00 F:255-382 Mannose-Binding Protein A, subunit A                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeee.....hhhhhhhhhhhh..ee....hhhhhhhhhhhhhh....eeeeee........ee......hhhhhhhh............eeeee..eeeee......eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------S SAPs(SNPs)
                PROSITE (1) --------C_TYPE_LECTIN_2  PDB: F:263-378 UniProt: 263-378                                                                    ---- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1       ----- PROSITE (2)
           Transcript 1 (1) Exon 1.5  PDB: F:255-300 UniProt: 250-300     Exon 1.6a  PDB: F:301-338             -------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------Exon 1.7  PDB: F:338-382 UniProt: 338-404     Transcript 1 (2)
                 1k9i F 255 PCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAA 382
                                   264       274       284       294       304       314       324       334       344       354       364       374        

Chain G from PDB  Type:PROTEIN  Length:128
 aligned with CD209_HUMAN | Q9NNX6 from UniProtKB/Swiss-Prot  Length:404

    Alignment length:128
                                   264       274       284       294       304       314       324       334       344       354       364       374        
          CD209_HUMAN   255 PCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAA 382
               SCOP domains d1k9ig_ G: DC-SIGN (dendritic cell-specific ICAM-3 grabbing nonintegrin)                                                         SCOP domains
               CATH domains 1k9iG00 G:255-382 Mannose-Binding Protein A, subunit A                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeee.....hhhhhhhhhhh...ee....hhhhhhhhhhhhhh....eeeeeeeeee..eeee......hhhhhhhh............eeeee..eeeee......eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------S SAPs(SNPs)
                PROSITE (1) --------C_TYPE_LECTIN_2  PDB: G:263-378 UniProt: 263-378                                                                    ---- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1       ----- PROSITE (2)
           Transcript 1 (1) Exon 1.5  PDB: G:255-300 UniProt: 250-300     Exon 1.6a  PDB: G:301-338             -------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------Exon 1.7  PDB: G:338-382 UniProt: 338-404     Transcript 1 (2)
                 1k9i G 255 PCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAA 382
                                   264       274       284       294       304       314       324       334       344       354       364       374        

Chain H from PDB  Type:PROTEIN  Length:127
 aligned with CD209_HUMAN | Q9NNX6 from UniProtKB/Swiss-Prot  Length:404

    Alignment length:127
                                   264       274       284       294       304       314       324       334       344       354       364       374       
          CD209_HUMAN   255 PCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSA 381
               SCOP domains d1k9ih_ H: DC-SIGN (dendritic cell-specific ICAM-3 grabbing nonintegrin)                                                        SCOP domains
               CATH domains 1k9iH00 H:255-381 Mannose-Binding Protein A, subunit A                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeee.....hhhhhhhhhh....ee....hhhhhhhhhhhhhhh...eeeeee........ee......hhhhhhhh............eeeee..eeeee......eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------C_TYPE_LECTIN_2  PDB: H:263-378 UniProt: 263-378                                                                    --- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1       ---- PROSITE (2)
           Transcript 1 (1) Exon 1.5  PDB: H:255-300 UniProt: 250-300     Exon 1.6a  PDB: H:301-338             ------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------Exon 1.7  PDB: H:338-381 UniProt: 338-404    Transcript 1 (2)
                 1k9i H 255 PCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSA 381
                                   264       274       284       294       304       314       324       334       344       354       364       374       

Chain I from PDB  Type:PROTEIN  Length:128
 aligned with CD209_HUMAN | Q9NNX6 from UniProtKB/Swiss-Prot  Length:404

    Alignment length:128
                                   264       274       284       294       304       314       324       334       344       354       364       374        
          CD209_HUMAN   255 PCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAA 382
               SCOP domains d1k9ii_ I: DC-SIGN (dendritic cell-specific ICAM-3 grabbing nonintegrin)                                                         SCOP domains
               CATH domains 1k9iI00 I:255-382 Mannose-Binding Protein A, subunit A                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eeeee.....hhhhhhhhhhh...ee....hhhhhhhhhhhhhhhh..eeeeeeeeee..eeee........hhhhhh............eeeee..eeeee......eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------S SAPs(SNPs)
                PROSITE (1) --------C_TYPE_LECTIN_2  PDB: I:263-378 UniProt: 263-378                                                                    ---- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1       ----- PROSITE (2)
           Transcript 1 (1) Exon 1.5  PDB: I:255-300 UniProt: 250-300     Exon 1.6a  PDB: I:301-338             -------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------Exon 1.7  PDB: I:338-382 UniProt: 338-404     Transcript 1 (2)
                 1k9i I 255 PCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAA 382
                                   264       274       284       294       304       314       324       334       344       354       364       374        

Chain J from PDB  Type:PROTEIN  Length:128
 aligned with CD209_HUMAN | Q9NNX6 from UniProtKB/Swiss-Prot  Length:404

    Alignment length:128
                                   264       274       284       294       304       314       324       334       344       354       364       374        
          CD209_HUMAN   255 PCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAA 382
               SCOP domains d1k9ij_ J: DC-SIGN (dendritic cell-specific ICAM-3 grabbing nonintegrin)                                                         SCOP domains
               CATH domains 1k9iJ00 J:255-382 Mannose-Binding Protein A, subunit A                                                                           CATH domains
           Pfam domains (1) ------------------Lectin_C-1k9iJ01 J:273-379                                                                                 --- Pfam domains (1)
           Pfam domains (2) ------------------Lectin_C-1k9iJ02 J:273-379                                                                                 --- Pfam domains (2)
           Pfam domains (3) ------------------Lectin_C-1k9iJ03 J:273-379                                                                                 --- Pfam domains (3)
           Pfam domains (4) ------------------Lectin_C-1k9iJ04 J:273-379                                                                                 --- Pfam domains (4)
           Pfam domains (5) ------------------Lectin_C-1k9iJ05 J:273-379                                                                                 --- Pfam domains (5)
           Pfam domains (6) ------------------Lectin_C-1k9iJ06 J:273-379                                                                                 --- Pfam domains (6)
           Pfam domains (7) ------------------Lectin_C-1k9iJ07 J:273-379                                                                                 --- Pfam domains (7)
           Pfam domains (8) ------------------Lectin_C-1k9iJ08 J:273-379                                                                                 --- Pfam domains (8)
           Pfam domains (9) ------------------Lectin_C-1k9iJ09 J:273-379                                                                                 --- Pfam domains (9)
          Pfam domains (10) ------------------Lectin_C-1k9iJ10 J:273-379                                                                                 --- Pfam domains (10)
         Sec.struct. author ......eee..eeeee.....hhhhhhhhhhh...ee....hhhhhhhhhhhhhhhh..eeeeee........ee.......hhhhhhh............eeeee..eeeee......eeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------S SAPs(SNPs)
                PROSITE (1) --------C_TYPE_LECTIN_2  PDB: J:263-378 UniProt: 263-378                                                                    ---- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------C_TYPE_LECTIN_1       ----- PROSITE (2)
           Transcript 1 (1) Exon 1.5  PDB: J:255-300 UniProt: 250-300     Exon 1.6a  PDB: J:301-338             -------------------------------------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------------------------------------------Exon 1.7  PDB: J:338-382 UniProt: 338-404     Transcript 1 (2)
                 1k9i J 255 PCPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTWMGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGNGWNDDKCNLAKFWICKKSAA 382
                                   264       274       284       294       304       314       324       334       344       354       364       374        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 10)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 10)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
1a1k9iD00D:253-384
1b1k9iA00A:255-382
1c1k9iB00B:255-382
1d1k9iC00C:255-382
1e1k9iE00E:255-382
1f1k9iF00F:255-382
1g1k9iG00G:255-382
1h1k9iI00I:255-382
1i1k9iJ00J:255-382
1j1k9iH00H:255-381

(-) Pfam Domains  (1, 10)

Asymmetric/Biological Unit
(-)
Clan: C_Lectin (98)
1aLectin_C-1k9iJ01J:273-379
1bLectin_C-1k9iJ02J:273-379
1cLectin_C-1k9iJ03J:273-379
1dLectin_C-1k9iJ04J:273-379
1eLectin_C-1k9iJ05J:273-379
1fLectin_C-1k9iJ06J:273-379
1gLectin_C-1k9iJ07J:273-379
1hLectin_C-1k9iJ08J:273-379
1iLectin_C-1k9iJ09J:273-379
1jLectin_C-1k9iJ10J:273-379

(-) Gene Ontology  (33, 33)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J   (CD209_HUMAN | Q9NNX6)
molecular function
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0005537    mannose binding    Interacting selectively and non-covalently with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0042605    peptide antigen binding    Interacting selectively and non-covalently with an antigen peptide.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0046790    virion binding    Interacting selectively and non-covalently with a virion, either by binding to components of the capsid or the viral envelope.
    GO:0001618    virus receptor activity    Combining with a virus component and mediating entry of the virus into the cell.
biological process
    GO:0002250    adaptive immune response    An immune response mediated by cells expressing specific receptors for antigen produced through a somatic diversification process, and allowing for an enhanced secondary response to subsequent exposures to the same antigen (immunological memory).
    GO:0019882    antigen processing and presentation    The process in which an antigen-presenting cell expresses antigen (peptide or lipid) on its cell surface in association with an MHC protein complex.
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0009988    cell-cell recognition    Cell recognition between cells. May involve the formation of specialized cell junctions.
    GO:0006897    endocytosis    A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle.
    GO:0007157    heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules    The attachment of an adhesion molecule in one cell to a nonidentical adhesion molecule in an adjacent cell.
    GO:0002376    immune system process    Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats.
    GO:0045087    innate immune response    Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens.
    GO:0035556    intracellular signal transduction    The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
    GO:0075733    intracellular transport of virus    The directed movement of a virus, or part of a virus, within the host cell.
    GO:0007159    leukocyte cell-cell adhesion    The attachment of a leukocyte to another cell via adhesion molecules.
    GO:0019048    modulation by virus of host morphology or physiology    The process in which a virus effects a change in the structure or processes of its host organism.
    GO:0046968    peptide antigen transport    The directed movement of a peptide antigen into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. The peptide antigen is typically, but not always, processed from an endogenous or exogenous protein.
    GO:0042129    regulation of T cell proliferation    Any process that modulates the frequency, rate or extent of T cell proliferation.
    GO:0002223    stimulatory C-type lectin receptor signaling pathway    Any series of molecular signals generated as a consequence of binding to a C-type lectin receptor capable of cellular activation.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0019079    viral genome replication    Any process involved directly in viral genome replication, including viral nucleotide metabolism.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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  CD209_HUMAN | Q9NNX6
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        CD209_HUMAN | Q9NNX61sl4 1sl5 2b6b 2it5 2it6 2xr5 2xr6

(-) Related Entries Specified in the PDB File

1k9j 1K9J IS THE COMPLEX OF DC-SIGNR AND GLCNAC2MAN3.