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(-) Description

Title :  GGA3 VHS DOMAIN COMPLEXED WITH C-TERMINAL PEPTIDE FROM CATION-DEPENDENT MANNOSE 6-PHOSPHATE RECEPTOR
 
Authors :  S. Misra, R. Puertollano, J. S. Bonifacino, J. H. Hurley
Date :  26 Aug 01  (Deposition) - 27 Feb 02  (Release) - 12 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,E  (1x)
Biol. Unit 2:  B,F  (1x)
Biol. Unit 3:  C,G  (1x)
Biol. Unit 4:  D,H  (1x)
Biol. Unit 5:  A (1x),B (1x),C (1x),D (1x),E (1x),F (1x),G (1x),H (1x)
Biol. Unit 6:  A (1x),B (1x),C (1x),D (1x),E (1x),G (1x)
Keywords :  Protein-Peptide Complex; Vhs Domain; Dxxll Sorting Signal, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Misra, R. Puertollano, Y. Kato, J. S. Bonifacino, J. H. Hurley
Structural Basis For Acidic-Cluster-Dileucine Sorting-Signa Recognition By Vhs Domains.
Nature V. 415 933 2002
PubMed-ID: 11859375  |  Reference-DOI: 10.1038/415933A

(-) Compounds

Molecule 1 - ADP-RIBOSYLATION FACTOR BINDING PROTEIN GGA3
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPHIS-PARALLEL2
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentVHS DOMAIN
    GeneGGA3
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
 
Molecule 2 - CATION-DEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR
    ChainsE, F, G, H
    EngineeredYES
    FragmentC-TERMINAL PEPTIDE
    Other DetailsTHE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE OF THE PEPTIDE IS NATURALLY FOUND IN HOMO SAPIENS (HUMAN).
    SyntheticYES

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)A   E   
Biological Unit 2 (1x) B   F  
Biological Unit 3 (1x)  C   G 
Biological Unit 4 (1x)   D   H
Biological Unit 5 (1x)A (1x)B (1x)C (1x)D (1x)E (1x)F (1x)G (1x)H (1x)
Biological Unit 6 (1x)A (1x)B (1x)C (1x)D (1x)E (1x) G (1x) 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 14)

Asymmetric Unit (1, 14)
No.NameCountTypeFull Name
1MSE14Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 5 (1, 7)
No.NameCountTypeFull Name
1MSE7Mod. Amino AcidSELENOMETHIONINE
Biological Unit 6 (1, 7)
No.NameCountTypeFull Name
1MSE7Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1JUQ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1JUQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1JUQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 4)

Asymmetric Unit (1, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_075715K132RGGA3_HUMANPolymorphism117805695A/B/C/DK132R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_075715K132RGGA3_HUMANPolymorphism117805695AK132R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_075715K132RGGA3_HUMANPolymorphism117805695BK132R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_075715K132RGGA3_HUMANPolymorphism117805695CK132R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 4 (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_075715K132RGGA3_HUMANPolymorphism117805695DK132R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 5 (1, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_075715K132RGGA3_HUMANPolymorphism117805695A/B/C/DK132R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 6 (1, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_075715K132RGGA3_HUMANPolymorphism117805695A/B/C/DK132R

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1VHSPS50179 VHS domain profile.GGA3_HUMAN16-146
 
 
 
  4A:16-146
B:16-146
C:16-146
D:16-146
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1VHSPS50179 VHS domain profile.GGA3_HUMAN16-146
 
 
 
  1A:16-146
-
-
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1VHSPS50179 VHS domain profile.GGA3_HUMAN16-146
 
 
 
  1-
B:16-146
-
-
Biological Unit 3 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1VHSPS50179 VHS domain profile.GGA3_HUMAN16-146
 
 
 
  1-
-
C:16-146
-
Biological Unit 4 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1VHSPS50179 VHS domain profile.GGA3_HUMAN16-146
 
 
 
  1-
-
-
D:16-146
Biological Unit 5 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1VHSPS50179 VHS domain profile.GGA3_HUMAN16-146
 
 
 
  4A:16-146
B:16-146
C:16-146
D:16-146
Biological Unit 6 (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1VHSPS50179 VHS domain profile.GGA3_HUMAN16-146
 
 
 
  4A:16-146
B:16-146
C:16-146
D:16-146

(-) Exons   (1, 4)

Asymmetric Unit (1, 4)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000000004121ENSE00001348389chr12:9102252-9102084169MPRD_HUMAN-00--
1.2ENST000000004122ENSE00000867851chr12:9099001-9098825177MPRD_HUMAN1-59590--
1.3ENST000000004123ENSE00000717493chr12:9098180-9098014167MPRD_HUMAN59-115570--
1.4ENST000000004124ENSE00000717492chr12:9096506-9096397110MPRD_HUMAN115-151370--
1.5ENST000000004125ENSE00000717490chr12:9096131-9096001131MPRD_HUMAN152-195440--
1.6ENST000000004126ENSE00000717488chr12:9095138-9095012127MPRD_HUMAN195-237430--
1.7ENST000000004127ENSE00001046301chr12:9094536-90929761561MPRD_HUMAN238-277404E:307-311
F:307-313
G:307-311
H:306-313
5
7
5
8

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:151
 aligned with GGA3_HUMAN | Q9NZ52 from UniProtKB/Swiss-Prot  Length:723

    Alignment length:151
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156 
           GGA3_HUMAN     7 ESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLKRQGIVQSDPPIPVDRTLI 157
               SCOP domains d1juqa_ A: ADP-ribosylation factor binding protein Gga3                                                                                                 SCOP domains
               CATH domains 1juqA00 A:7-157  [code=1.25.40.90, no name defined]                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------R------------------------- SAPs(SNPs)
                    PROSITE ---------VHS  PDB: A:16-146 UniProt: 16-146                                                                                                 ----------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1juq A   7 ESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACmKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTmALPEEAKIKDAYHmLKRQGIVQSDPPIPVDRTLI 157
                                    16        26        36        46        56        66      | 76        86        96       106       116      |126       136|      146       156 
                                                                                             73-MSE                                           123-MSE       137-MSE                

Chain B from PDB  Type:PROTEIN  Length:159
 aligned with GGA3_HUMAN | Q9NZ52 from UniProtKB/Swiss-Prot  Length:723

    Alignment length:159
                              1                                                                                                                                                            
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148         
           GGA3_HUMAN     - --MAEAEGESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLKRQGIVQSDPPIPVDRTLI 157
               SCOP domains d1juqb_ B: ADP-ribosylation factor binding protein Gga3                                                                                                         SCOP domains
               CATH domains 1juqB00 B:204-157  [code=1.25.40.90, no name defined]                                                                                                           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------R------------------------- SAPs(SNPs)
                    PROSITE -----------------VHS  PDB: B:16-146 UniProt: 16-146                                                                                                 ----------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1juq B 204 GSmAEAEGESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACmKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTmALPEEAKIKDAYHmLKRQGIVQSDPPIPVDRTLI 157
                             ||      8        18        28        38        48        58        68    |   78        88        98       108       118    |  128       138       148         
                           205|                                                                      73-MSE                                           123-MSE       137-MSE                
                              1-MSE                                                                                                                                                        

Chain C from PDB  Type:PROTEIN  Length:149
 aligned with GGA3_HUMAN | Q9NZ52 from UniProtKB/Swiss-Prot  Length:723

    Alignment length:149
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147         
           GGA3_HUMAN     8 SLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLKRQGIVQSDPPIPVDRTL 156
               SCOP domains d1juqc_ C: ADP-ribosylation factor binding protein Gga3                                                                                               SCOP domains
               CATH domains 1juqC00 C:8-156  [code=1.25.40.90, no name defined]                                                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh.......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------R------------------------ SAPs(SNPs)
                    PROSITE --------VHS  PDB: C:16-146 UniProt: 16-146                                                                                                 ---------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1juq C   8 SLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACmKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTmALPEEAKIKDAYHmLKRQGIVQSDPPIPVDRTL 156
                                    17        27        37        47        57        67     |  77        87        97       107       117     | 127       137       147         
                                                                                            73-MSE                                           123-MSE       137-MSE               

Chain D from PDB  Type:PROTEIN  Length:159
 aligned with GGA3_HUMAN | Q9NZ52 from UniProtKB/Swiss-Prot  Length:723

    Alignment length:159
                              1                                                                                                                                                            
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148         
           GGA3_HUMAN     - --MAEAEGESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLKRQGIVQSDPPIPVDRTLI 157
               SCOP domains d1juqd_ D: ADP-ribosylation factor binding protein Gga3                                                                                                         SCOP domains
               CATH domains 1juqD00 D:204-157  [code=1.25.40.90, no name defined]                                                                                                           CATH domains
           Pfam domains (1) ----VHS-1juqD01 D:3-142                                                                                                                         --------------- Pfam domains (1)
           Pfam domains (2) ----VHS-1juqD02 D:3-142                                                                                                                         --------------- Pfam domains (2)
           Pfam domains (3) ----VHS-1juqD03 D:3-142                                                                                                                         --------------- Pfam domains (3)
           Pfam domains (4) ----VHS-1juqD04 D:3-142                                                                                                                         --------------- Pfam domains (4)
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------R------------------------- SAPs(SNPs)
                    PROSITE -----------------VHS  PDB: D:16-146 UniProt: 16-146                                                                                                 ----------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1juq D 204 GSmAEAEGESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACmKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTmALPEEAKIKDAYHmLKRQGIVQSDPPIPVDRTLI 157
                             ||      8        18        28        38        48        58        68    |   78        88        98       108       118    |  128       138       148         
                           205|                                                                      73-MSE                                           123-MSE       137-MSE                
                              1-MSE                                                                                                                                                        

Chain E from PDB  Type:PROTEIN  Length:5
 aligned with MPRD_HUMAN | P20645 from UniProtKB/Swiss-Prot  Length:277

    Alignment length:5
           MPRD_HUMAN   271 DDHLL 275
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
               Transcript 1 1.7   Transcript 1
                 1juq E 307 DDHLL 311

Chain F from PDB  Type:PROTEIN  Length:7
 aligned with MPRD_HUMAN | P20645 from UniProtKB/Swiss-Prot  Length:277

    Alignment length:7
           MPRD_HUMAN   271 DDHLLPM 277
               SCOP domains ------- SCOP domains
               CATH domains ------- CATH domains
               Pfam domains ------- Pfam domains
         Sec.struct. author ....... Sec.struct. author
                 SAPs(SNPs) ------- SAPs(SNPs)
                    PROSITE ------- PROSITE
               Transcript 1 1.7     Transcript 1
                 1juq F 307 DDHLLPM 313

Chain G from PDB  Type:PROTEIN  Length:5
 aligned with MPRD_HUMAN | P20645 from UniProtKB/Swiss-Prot  Length:277

    Alignment length:5
           MPRD_HUMAN   271 DDHLL 275
               SCOP domains ----- SCOP domains
               CATH domains ----- CATH domains
               Pfam domains ----- Pfam domains
         Sec.struct. author ..... Sec.struct. author
                 SAPs(SNPs) ----- SAPs(SNPs)
                    PROSITE ----- PROSITE
               Transcript 1 1.7   Transcript 1
                 1juq G 307 DDHLL 311

Chain H from PDB  Type:PROTEIN  Length:8
 aligned with MPRD_HUMAN | P20645 from UniProtKB/Swiss-Prot  Length:277

    Alignment length:8
           MPRD_HUMAN   270 RDDHLLPM 277
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ........ Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
               Transcript 1 Exon 1.7 Transcript 1
                 1juq H 306 RDDHLLPM 313

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (1, 4)

Asymmetric Unit

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: ENTH_VHS (15)
(-)
Family: VHS (11)
1aVHS-1juqD01D:3-142
1bVHS-1juqD02D:3-142
1cVHS-1juqD03D:3-142
1dVHS-1juqD04D:3-142

(-) Gene Ontology  (31, 35)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (GGA3_HUMAN | Q9NZ52)
molecular function
    GO:0030306    ADP-ribosylation factor binding    Interacting selectively and non-covalently with ARF, ADP-ribosylation factor, a small monomeric cytosolic GTPase that, when bound to GTP, binds to the membranes of cells.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0044267    cellular protein metabolic process    The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification.
    GO:0006886    intracellular protein transport    The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
    GO:0045732    positive regulation of protein catabolic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
    GO:0015031    protein transport    The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
    GO:0016192    vesicle-mediated transport    A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0030131    clathrin adaptor complex    A membrane coat adaptor complex that links clathrin to a membrane.
    GO:0005768    endosome    A vacuole to which materials ingested by endocytosis are delivered.
    GO:0010008    endosome membrane    The lipid bilayer surrounding an endosome.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005802    trans-Golgi network    The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination.

Chain E,F,G,H   (MPRD_HUMAN | P20645)
molecular function
    GO:0005537    mannose binding    Interacting selectively and non-covalently with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans.
    GO:0015578    mannose transmembrane transporter activity    Enables the transfer of mannose from one side of the membrane to the other. Mannose is the aldohexose manno-hexose, the C-2 epimer of glucose. The D-(+)-form is widely distributed in mannans and hemicelluloses and is of major importance in the core oligosaccharide of N-linked oligosaccharides of glycoproteins.
    GO:0004888    transmembrane signaling receptor activity    Combining with an extracellular or intracellular signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity or state as part of signal transduction.
biological process
    GO:0008333    endosome to lysosome transport    The directed movement of substances from endosomes to lysosomes.
    GO:0015761    mannose transport    The directed movement of mannose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Mannose is the aldohexose manno-hexose, the C-2 epimer of glucose. The D-(+)-form is widely distributed in mannans and hemicelluloses and is of major importance in the core oligosaccharide of N-linked oligosaccharides of glycoproteins.
    GO:0006898    receptor-mediated endocytosis    An endocytosis process in which cell surface receptors ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005768    endosome    A vacuole to which materials ingested by endocytosis are delivered.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005770    late endosome    A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center.
    GO:0005765    lysosomal membrane    The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm.
    GO:0005764    lysosome    A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.
    GO:0000323    lytic vacuole    A vacuole that is maintained at an acidic pH and which contains degradative enzymes, including a wide variety of acid hydrolases.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0048471    perinuclear region of cytoplasm    Cytoplasm situated near, or occurring around, the nucleus.
    GO:0005802    trans-Golgi network    The network of interconnected tubular and cisternal structures located within the Golgi apparatus on the side distal to the endoplasmic reticulum, from which secretory vesicles emerge. The trans-Golgi network is important in the later stages of protein secretion where it is thought to play a key role in the sorting and targeting of secreted proteins to the correct destination.
    GO:0032588    trans-Golgi network membrane    The lipid bilayer surrounding any of the compartments that make up the trans-Golgi network.
    GO:0030133    transport vesicle    Any of the vesicles of the constitutive secretory pathway, which carry cargo from the endoplasmic reticulum to the Golgi, between Golgi cisternae, from the Golgi to the ER (retrograde transport) or to destinations within or outside the cell.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        GGA3_HUMAN | Q9NZ521jpl 1lf8 1p4u 1wr6 1yd8

(-) Related Entries Specified in the PDB File

1dvp VHS DOMAIN
1elk VHS DOMAIN
1jpl 1JPL CONTAINS SAME PROTEIN COMPLEXED WITH TAIL OF CATION- INDEPENDENT MANNOSE 6-PHOSPHATE RECEPTOR