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1JUQ
Asym. Unit
Info
Asym.Unit (115 KB)
Biol.Unit 1 (28 KB)
Biol.Unit 2 (30 KB)
Biol.Unit 3 (28 KB)
Biol.Unit 4 (30 KB)
Biol.Unit 5 (109 KB)
Biol.Unit 6 (106 KB)
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(1)
Title
:
GGA3 VHS DOMAIN COMPLEXED WITH C-TERMINAL PEPTIDE FROM CATION-DEPENDENT MANNOSE 6-PHOSPHATE RECEPTOR
Authors
:
S. Misra, R. Puertollano, J. S. Bonifacino, J. H. Hurley
Date
:
26 Aug 01 (Deposition) - 27 Feb 02 (Release) - 12 Oct 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,E (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C,G (1x)
Biol. Unit 4: D,H (1x)
Biol. Unit 5: A,B,C,D,E,F,G,H (1x)
Biol. Unit 6: A,B,C,D,E,G (1x)
Keywords
:
Protein-Peptide Complex; Vhs Domain; Dxxll Sorting Signal, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Misra, R. Puertollano, Y. Kato, J. S. Bonifacino, J. H. Hurley
Structural Basis For Acidic-Cluster-Dileucine Sorting-Signa Recognition By Vhs Domains.
Nature V. 415 933 2002
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Hetero Components
(1, 14)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MSE
14
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_075715 (K132R, chain A/B/C/D, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_075715
K
132
R
GGA3_HUMAN
Polymorphism
117805695
A/B/C/D
K
132
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: VHS (A:16-146,B:16-146,C:16-146,D:16-14...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
VHS
PS50179
VHS domain profile.
GGA3_HUMAN
16-146
4
A:16-146
B:16-146
C:16-146
D:16-146
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Exons
(1, 4)
Info
All Exons
Exon 1.7 (E:307-311 | F:307-313 | G:307-311 ...)
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All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000000412
1
ENSE00001348389
chr12:
9102252-9102084
169
MPRD_HUMAN
-
0
0
-
-
1.2
ENST00000000412
2
ENSE00000867851
chr12:
9099001-9098825
177
MPRD_HUMAN
1-59
59
0
-
-
1.3
ENST00000000412
3
ENSE00000717493
chr12:
9098180-9098014
167
MPRD_HUMAN
59-115
57
0
-
-
1.4
ENST00000000412
4
ENSE00000717492
chr12:
9096506-9096397
110
MPRD_HUMAN
115-151
37
0
-
-
1.5
ENST00000000412
5
ENSE00000717490
chr12:
9096131-9096001
131
MPRD_HUMAN
152-195
44
0
-
-
1.6
ENST00000000412
6
ENSE00000717488
chr12:
9095138-9095012
127
MPRD_HUMAN
195-237
43
0
-
-
1.7
ENST00000000412
7
ENSE00001046301
chr12:
9094536-9092976
1561
MPRD_HUMAN
238-277
40
4
E:307-311
F:307-313
G:307-311
H:306-313
5
7
5
8
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1juqa_ (A:)
1b: SCOP_d1juqb_ (B:)
1c: SCOP_d1juqc_ (C:)
1d: SCOP_d1juqd_ (D:)
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Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ENTH/VHS domain
(36)
Family
:
VHS domain
(16)
Protein domain
:
ADP-ribosylation factor binding protein Gga3
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d1juqa_
A:
1b
d1juqb_
B:
1c
d1juqc_
C:
1d
d1juqd_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1juqC00 (C:8-156)
1b: CATH_1juqA00 (A:7-157)
1c: CATH_1juqB00 (B:204-157)
1d: CATH_1juqD00 (D:204-157)
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.90, no name defined]
(33)
Human (Homo sapiens)
(20)
1a
1juqC00
C:8-156
1b
1juqA00
A:7-157
1c
1juqB00
B:204-157
1d
1juqD00
D:204-157
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_VHS_1juqD01 (D:3-142)
1b: PFAM_VHS_1juqD02 (D:3-142)
1c: PFAM_VHS_1juqD03 (D:3-142)
1d: PFAM_VHS_1juqD04 (D:3-142)
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Clan
:
ENTH_VHS
(15)
Family
:
VHS
(11)
Homo sapiens (Human)
(11)
1a
VHS-1juqD01
D:3-142
1b
VHS-1juqD02
D:3-142
1c
VHS-1juqD03
D:3-142
1d
VHS-1juqD04
D:3-142
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Asym.Unit (115 KB)
Header - Asym.Unit
Biol.Unit 1 (28 KB)
Header - Biol.Unit 1
Biol.Unit 2 (30 KB)
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Biol.Unit 3 (28 KB)
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Biol.Unit 4 (30 KB)
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