Chain A from PDB Type:PROTEIN Length:150
aligned with RNH_ECOLI | P0A7Y4 from UniProtKB/Swiss-Prot Length:155
Alignment length:150
81
80 |
12 22 32 42 52 62 72 |81 91 101 111 121 131 141 151
RNH_ECOLI 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGY 151
SCOP domains d1jl2a_ A: RNase H (RNase HI) SCOP domains
CATH domains 1jl2A00 A:3-152 [code=3.30.420.10, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .eeeeeeeeee....eeeeeeeeee....eeeeeeeeeeehhhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhh......... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1jl2 A 3 KQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELKAAIEGLKALKEPAEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHAGHPENERADELARAAAMNPTLEDTGY 152
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152
Chain A from PDB Type:PROTEIN Length:150
aligned with RNH_THET8 | P29253 from UniProtKB/Swiss-Prot Length:166
Alignment length:160
16 26 36 46 56 66 76 86 96 106 116 126 136 146 156 166
RNH_THET8 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEPCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQSQAKTPCPPRAPTLFHEEA 166
SCOP domains d1jl2a_ A: RNase H (RNase HI) SCOP domains
CATH domains 1jl2A00 A:3-152 [code=3.30.420.10, no name defined] CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeeeeee....eeeeeeeeee....eeeeeeeeeeehhhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhh.----------........ Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1jl2 A 3 KQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELKAAIEGLKALKEPAEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHAGHPENERADELARAAAMN----------PTLEDTGY 152
12 22 32 42 52 62 72 82 92 102 112 122 132 142 | - | 152
144 145
Chain B from PDB Type:PROTEIN Length:133
aligned with RNH_ECOLI | P0A7Y4 from UniProtKB/Swiss-Prot Length:155
Alignment length:149
12 22 32 42 52 62 72 82 92 102 112 122 132 142
RNH_ECOLI 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGY 151
SCOP domains d1jl2b_ B: RNase H (RNase HI) SCOP domains
CATH domains 1jl2B00 B:3-152 [code=3.30.420.10, no name defined] CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeeeeee....eeeeeeeeeee..eeeeeeeeeeeehhhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhh----------------...hhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhhh........ Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1jl2 B 3 KQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELKAAIEGLKALKEPAEVDLYTDSHYLKKAFTE----------------PVKNRDLWEALLLAMAPHRVRFHFVKGHAGHPENERADELARAAAMNPTLEDTGY 152
12 22 32 42 52 62 72 | - - | 103 113 123 133 143
80 98
Chain B from PDB Type:PROTEIN Length:133
aligned with RNH_THET8 | P29253 from UniProtKB/Swiss-Prot Length:166
Alignment length:160
16 26 36 46 56 66 76 86 96 106 116 126 136 146 156 166
RNH_THET8 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEPCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQSQAKTPCPPRAPTLFHEEA 166
SCOP domains d1jl2b_ B: RNase H (RNase HI) SCOP domains
CATH domains 1jl2B00 B:3-152 [code=3.30.420.10, no name defined] CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeeeeee....eeeeeeeeeee..eeeeeeeeeeeehhhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhh-----------------...hhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhhh----------........ Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1jl2 B 3 KQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELKAAIEGLKALKEPAEVDLYTDSHYLKKAFTE-----------------PVKNRDLWEALLLAMAPHRVRFHFVKGHAGHPENERADELARAAAMN----------PTLEDTGY 152
12 22 32 42 52 62 72 | - - | 102 112 122 132 142 | - | 152
80 98 144 145
Chain C from PDB Type:PROTEIN Length:133
aligned with RNH_ECOLI | P0A7Y4 from UniProtKB/Swiss-Prot Length:155
Alignment length:150
12 22 32 42 52 62 72 82 92 102 112 122 132 142 152
RNH_ECOLI 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQ 152
SCOP domains d1jl2c_ C: RNase H (RNase HI) SCOP domains
CATH domains 1jl2C00 C:3-153 [code=3.30.420.10, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author .eeeeeeeeee....eeeeeeeeee....eeeeeeeeeeehhhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhh.-----------------..hhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhh.......... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1jl2 C 3 KQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELKAAIEGLKALKEPAEVDLYTDSHYLKKAFTE-----------------VKNRDLWEALLLAMAPHRVRFHFVKGHAGHPENERADELARAAAMNPTLEDTGYQ 153
12 22 32 42 52 62 72 | - - | 103 113 123 133 143 153
80 99
Chain C from PDB Type:PROTEIN Length:133
aligned with RNH_THET8 | P29253 from UniProtKB/Swiss-Prot Length:166
Alignment length:157
16 26 36 46 56 66 76 86 96 106 116 126 136 146 156
RNH_THET8 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEPCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQSQAKTPCPPRAPTLFH 163
SCOP domains d1jl2c_ C: RNase H (RNase HI) SCOP domains
CATH domains 1jl2C00 C:3-153 [code=3.30.420.10, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeeeeee....eeeeeeeeee....eeeeeeeeeeehhhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhh.------------------..hhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhh.------......... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1jl2 C 3 KQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELKAAIEGLKALKEPAEVDLYTDSHYLKKAFTE------------------VKNRDLWEALLLAMAPHRVRFHFVKGHAGHPENERADELARAAAMN------PTLEDTGYQ 153
12 22 32 42 52 62 72 | - - |102 112 122 132 142 | 146
80 99 144 145
Chain D from PDB Type:PROTEIN Length:146
aligned with RNH_ECOLI | P0A7Y4 from UniProtKB/Swiss-Prot Length:155
Alignment length:151
81
80 |
12 22 32 42 52 62 72 |81 91 101 111 121 131 141 151
RNH_ECOLI 3 KQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQ-WIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQ 152
SCOP domains d1jl2d_ D: RNase H (RNase HI) SCOP domains
CATH domains 1jl2D00 D:3-153 [code=3.30.420.10, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeeeeee....eeeeeeeeeee..eeeeeeeeeeeehhhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhh.....-----..........hhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhh.......... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1jl2 D 3 KQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELKAAIEGLKALKEPAEVDLYTDSHYLKKAFTEGWLEG-----WRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHAGHPENERADELARAAAMNPTLEDTGYQ 153
12 22 32 42 52 62 72 82 | 92 102 112 122 132 142 152
85 91
Chain D from PDB Type:PROTEIN Length:146
aligned with RNH_THET8 | P29253 from UniProtKB/Swiss-Prot Length:166
Alignment length:157
16 26 36 46 56 66 76 86 96 106 116 126 136 146 156
RNH_THET8 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEPCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHTGHPENERVDREARRQAQSQAKTPCPPRAPTLFH 163
SCOP domains d1jl2d_ D: RNase H (RNase HI) SCOP domains
CATH domains 1jl2D00 D:3-153 [code=3.30.420.10, no name defined] CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeeeeee....eeeeeeeeeee..eeeeeeeeeeeehhhhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhh.....-----..........hhhhhhhhhhhhh..eeeeee......hhhhhhhhhhhhhhhh.------......... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1jl2 D 3 KQVEIFTDGSALGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELKAAIEGLKALKEPAEVDLYTDSHYLKKAFTEGWLEG-----WRTAEGKPVKNRDLWEALLLAMAPHRVRFHFVKGHAGHPENERADELARAAAMN------PTLEDTGYQ 153
12 22 32 42 52 62 72 82 | 92 102 112 122 132 142 | 146
85 91 144 145
Legend: |
|
→ Mismatch |
(orange background) |
|
- |
→ Gap |
(green background, '-', border residues have a numbering label) |
|
|
→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
|
x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
|
extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |