Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
(-)Biological Unit 5
(-)Biological Unit 6
(-)Biological Unit 7
(-)Biological Unit 8
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)
Image Biological Unit 5
Biological Unit 5  (Jmol Viewer)
Image Biological Unit 6
Biological Unit 6  (Jmol Viewer)
Image Biological Unit 7
Biological Unit 7  (Jmol Viewer)
Image Biological Unit 8
Biological Unit 8  (Jmol Viewer)

(-) Description

Title :  SELENOMETHIONINE SUBSTITUTION OF OROTIDINE-5'-MONOPHOSPHATE DECARBOXYLASE FROM E. COLI CAUSES A CHANGE IN CRYSTAL CONTACTS AND SPACE GROUP
 
Authors :  J. -C. N. Poulsen, P. Harris, K. F. Jensen, S. Larsen
Date :  06 Jul 01  (Deposition) - 01 Aug 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  I,J  (1x)
Biol. Unit 6:  K,L  (1x)
Biol. Unit 7:  M,N  (1x)
Biol. Unit 8:  O,P  (1x)
Keywords :  Alpha-Beta-Barrel, Protein-Inhibitor Complex, Homodimer, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. C. Poulsen, P. Harris, K. F. Jensen, S. Larsen
Selenomethionine Substitution Of Orotidine-5'-Monophosphate Decarboxylase Causes A Change In Crystal Contacts And Space Group.
Acta Crystallogr. , Sect. D V. 57 1251 2001
PubMed-ID: 11526316  |  Reference-DOI: 10.1107/S0907444901010393
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - OROTIDINE 5'-PHOSPHATE DECARBOXYLASE
    ChainsA, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P
    EC Number4.1.1.23
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPLFF8
    Expression System StrainSO6735
    Expression System Taxid562
    Expression System Vector TypePLASMID
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562
    SynonymOMP DECARBOXYLASE

 Structural Features

(-) Chains, Units

  12345678910111213141516
Asymmetric Unit ABCDEFGHIJKLMNOP
Biological Unit 1 (1x)AB              
Biological Unit 2 (1x)  CD            
Biological Unit 3 (1x)    EF          
Biological Unit 4 (1x)      GH        
Biological Unit 5 (1x)        IJ      
Biological Unit 6 (1x)          KL    
Biological Unit 7 (1x)            MN  
Biological Unit 8 (1x)              OP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 144)

Asymmetric Unit (2, 144)
No.NameCountTypeFull Name
1BMP16Ligand/Ion6-HYDROXYURIDINE-5'-PHOSPHATE
2MSE128Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 18)
No.NameCountTypeFull Name
1BMP2Ligand/Ion6-HYDROXYURIDINE-5'-PHOSPHATE
2MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 18)
No.NameCountTypeFull Name
1BMP2Ligand/Ion6-HYDROXYURIDINE-5'-PHOSPHATE
2MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (2, 18)
No.NameCountTypeFull Name
1BMP2Ligand/Ion6-HYDROXYURIDINE-5'-PHOSPHATE
2MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (2, 18)
No.NameCountTypeFull Name
1BMP2Ligand/Ion6-HYDROXYURIDINE-5'-PHOSPHATE
2MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 5 (2, 18)
No.NameCountTypeFull Name
1BMP2Ligand/Ion6-HYDROXYURIDINE-5'-PHOSPHATE
2MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 6 (2, 18)
No.NameCountTypeFull Name
1BMP2Ligand/Ion6-HYDROXYURIDINE-5'-PHOSPHATE
2MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 7 (2, 18)
No.NameCountTypeFull Name
1BMP2Ligand/Ion6-HYDROXYURIDINE-5'-PHOSPHATE
2MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 8 (2, 18)
No.NameCountTypeFull Name
1BMP2Ligand/Ion6-HYDROXYURIDINE-5'-PHOSPHATE
2MSE16Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:20 , ASP A:22 , LYS A:44 , ASP A:71 , LYS A:73 , LEU A:130 , THR A:131 , PRO A:189 , ARG A:192 , GLN A:201 , GLY A:221 , ARG A:222 , ASP B:76 , ILE B:77 , THR B:80BINDING SITE FOR RESIDUE BMP A 301
02AC2SOFTWAREASP A:76 , ILE A:77 , THR A:80 , ALA B:20 , ASP B:22 , LYS B:44 , ASP B:71 , LYS B:73 , LEU B:130 , THR B:131 , PRO B:189 , ARG B:192 , GLN B:201 , GLY B:221 , ARG B:222BINDING SITE FOR RESIDUE BMP B 302
03AC3SOFTWAREALA C:20 , ASP C:22 , LYS C:44 , ASP C:71 , LYS C:73 , LEU C:130 , THR C:131 , PRO C:189 , ARG C:192 , GLN C:201 , GLY C:221 , ARG C:222 , ASP D:76 , ILE D:77 , THR D:80BINDING SITE FOR RESIDUE BMP C 303
04AC4SOFTWAREASP C:76 , ILE C:77 , THR C:80 , ALA D:20 , ASP D:22 , LYS D:44 , ASP D:71 , LYS D:73 , LEU D:130 , THR D:131 , PRO D:189 , ARG D:192 , GLN D:201 , GLY D:221 , ARG D:222BINDING SITE FOR RESIDUE BMP D 304
05AC5SOFTWAREALA E:20 , ASP E:22 , LYS E:44 , ASP E:71 , LYS E:73 , LEU E:130 , THR E:131 , PRO E:189 , ARG E:192 , GLN E:201 , GLY E:221 , ARG E:222 , ASP F:76 , ILE F:77 , THR F:80BINDING SITE FOR RESIDUE BMP E 305
06AC6SOFTWAREASP E:76 , ILE E:77 , THR E:80 , ALA F:20 , ASP F:22 , LYS F:44 , ASP F:71 , LYS F:73 , LEU F:130 , THR F:131 , PRO F:189 , ARG F:192 , GLN F:201 , GLY F:221 , ARG F:222BINDING SITE FOR RESIDUE BMP F 306
07AC7SOFTWAREALA G:20 , ASP G:22 , LYS G:44 , ASP G:71 , LYS G:73 , LEU G:130 , THR G:131 , PRO G:189 , ARG G:192 , GLN G:201 , GLY G:221 , ARG G:222 , ASP H:76 , ILE H:77 , THR H:80BINDING SITE FOR RESIDUE BMP G 307
08AC8SOFTWAREASP G:76 , ILE G:77 , THR G:80 , ALA H:20 , ASP H:22 , LYS H:44 , ASP H:71 , LYS H:73 , LEU H:130 , THR H:131 , PRO H:189 , ARG H:192 , GLN H:201 , GLY H:221 , ARG H:222BINDING SITE FOR RESIDUE BMP H 308
09AC9SOFTWAREALA I:20 , ASP I:22 , LYS I:44 , ASP I:71 , LYS I:73 , LEU I:130 , THR I:131 , PRO I:189 , ARG I:192 , GLN I:201 , GLY I:221 , ARG I:222 , ASP J:76 , ILE J:77 , THR J:80BINDING SITE FOR RESIDUE BMP I 309
10BC1SOFTWAREASP I:76 , ILE I:77 , THR I:80 , ALA J:20 , ASP J:22 , LYS J:44 , ASP J:71 , LYS J:73 , LEU J:130 , THR J:131 , PRO J:189 , ARG J:192 , GLN J:201 , GLY J:221 , ARG J:222BINDING SITE FOR RESIDUE BMP J 310
11BC2SOFTWAREALA K:20 , ASP K:22 , LYS K:44 , ASP K:71 , LYS K:73 , LEU K:130 , THR K:131 , PRO K:189 , ARG K:192 , GLN K:201 , GLY K:221 , ARG K:222 , ASP L:76 , ILE L:77 , THR L:80BINDING SITE FOR RESIDUE BMP K 311
12BC3SOFTWAREASP K:76 , ILE K:77 , THR K:80 , ALA L:20 , ASP L:22 , LYS L:44 , ASP L:71 , LYS L:73 , LEU L:130 , THR L:131 , PRO L:189 , ARG L:192 , GLN L:201 , GLY L:221 , ARG L:222BINDING SITE FOR RESIDUE BMP L 312
13BC4SOFTWAREALA M:20 , ASP M:22 , LYS M:44 , ASP M:71 , LYS M:73 , LEU M:130 , THR M:131 , PRO M:189 , ARG M:192 , GLN M:201 , GLY M:221 , ARG M:222 , ASP N:76 , ILE N:77 , THR N:80BINDING SITE FOR RESIDUE BMP M 313
14BC5SOFTWAREASP M:76 , ILE M:77 , THR M:80 , ALA N:20 , ASP N:22 , LYS N:44 , ASP N:71 , LYS N:73 , LEU N:130 , THR N:131 , PRO N:189 , ARG N:192 , GLN N:201 , GLY N:221 , ARG N:222BINDING SITE FOR RESIDUE BMP N 314
15BC6SOFTWAREALA O:20 , ASP O:22 , LYS O:44 , ASP O:71 , LYS O:73 , LEU O:130 , THR O:131 , PRO O:189 , ARG O:192 , GLN O:201 , GLY O:221 , ARG O:222 , ASP P:76 , ILE P:77 , THR P:80BINDING SITE FOR RESIDUE BMP O 315
16BC7SOFTWAREASP O:76 , ILE O:77 , THR O:80 , ALA P:20 , ASP P:22 , LYS P:44 , ASP P:71 , LYS P:73 , LEU P:130 , THR P:131 , PRO P:189 , ARG P:192 , GLN P:201 , GLY P:221 , ARG P:222BINDING SITE FOR RESIDUE BMP P 316

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1JJK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1JJK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1JJK)

(-) PROSITE Motifs  (1, 16)

Asymmetric Unit (1, 16)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPDECASEPS00156 Orotidine 5'-phosphate decarboxylase active site.PYRF_ECOLI68-81
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  16A:68-81
B:68-81
C:68-81
D:68-81
E:68-81
F:68-81
G:68-81
H:68-81
I:68-81
J:68-81
K:68-81
L:68-81
M:68-81
N:68-81
O:68-81
P:68-81
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPDECASEPS00156 Orotidine 5'-phosphate decarboxylase active site.PYRF_ECOLI68-81
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  2A:68-81
B:68-81
-
-
-
-
-
-
-
-
-
-
-
-
-
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPDECASEPS00156 Orotidine 5'-phosphate decarboxylase active site.PYRF_ECOLI68-81
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  2-
-
C:68-81
D:68-81
-
-
-
-
-
-
-
-
-
-
-
-
Biological Unit 3 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPDECASEPS00156 Orotidine 5'-phosphate decarboxylase active site.PYRF_ECOLI68-81
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  2-
-
-
-
E:68-81
F:68-81
-
-
-
-
-
-
-
-
-
-
Biological Unit 4 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPDECASEPS00156 Orotidine 5'-phosphate decarboxylase active site.PYRF_ECOLI68-81
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  2-
-
-
-
-
-
G:68-81
H:68-81
-
-
-
-
-
-
-
-
Biological Unit 5 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPDECASEPS00156 Orotidine 5'-phosphate decarboxylase active site.PYRF_ECOLI68-81
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  2-
-
-
-
-
-
-
-
I:68-81
J:68-81
-
-
-
-
-
-
Biological Unit 6 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPDECASEPS00156 Orotidine 5'-phosphate decarboxylase active site.PYRF_ECOLI68-81
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  2-
-
-
-
-
-
-
-
-
-
K:68-81
L:68-81
-
-
-
-
Biological Unit 7 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPDECASEPS00156 Orotidine 5'-phosphate decarboxylase active site.PYRF_ECOLI68-81
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  2-
-
-
-
-
-
-
-
-
-
-
-
M:68-81
N:68-81
-
-
Biological Unit 8 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1OMPDECASEPS00156 Orotidine 5'-phosphate decarboxylase active site.PYRF_ECOLI68-81
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
  2-
-
-
-
-
-
-
-
-
-
-
-
-
-
O:68-81
P:68-81

(-) Exons   (0, 0)

(no "Exon" information available for 1JJK)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:231
 aligned with PYRF_ECOLI | P08244 from UniProtKB/Swiss-Prot  Length:245

    Alignment length:231
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 
           PYRF_ECOLI    12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ 242
               SCOP domains d1jjka_ A: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)                                                                                                                                                                 SCOP domains
               CATH domains 1jjkA00 A:12-242 Aldolase class I                                                                                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....hhhhhhhhhhhhhhhhheeeeehhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhhh.eeeee......hhhhhh......hhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhh...eeee.................hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------OMPDECASE     ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jjk A  12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEmFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWmVNVHASGGARmmTAAREALVPFGKDAPLLIAVTVLTSmEASDLVDLGmTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRImTPEQALSAGVDYmVIGRPVTQSVDPAQTLKAINASLQ 242
                                    21        31        41       |51        61        71        81        91   |   101    || 111       121       131 |     141 |     151       161       171       181       191       201   |   211      |221       231       241 
                                                                49-MSE                                        95-MSE    106-MSE                    133-MSE   143-MSE                                                       205-MSE      218-MSE                    
                                                                                                                         107-MSE                                                                                                                                   

Chain B from PDB  Type:PROTEIN  Length:231
 aligned with PYRF_ECOLI | P08244 from UniProtKB/Swiss-Prot  Length:245

    Alignment length:231
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 
           PYRF_ECOLI    12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ 242
               SCOP domains d1jjkb_ B: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)                                                                                                                                                                 SCOP domains
               CATH domains 1jjkB00 B:12-242 Aldolase class I                                                                                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....hhhhhhhhhhhhhhhhheeeeehhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhhh.eeeee......hhhhhh......hhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhh...eeee.................hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------OMPDECASE     ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jjk B  12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEmFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWmVNVHASGGARmmTAAREALVPFGKDAPLLIAVTVLTSmEASDLVDLGmTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRImTPEQALSAGVDYmVIGRPVTQSVDPAQTLKAINASLQ 242
                                    21        31        41       |51        61        71        81        91   |   101    || 111       121       131 |     141 |     151       161       171       181       191       201   |   211      |221       231       241 
                                                                49-MSE                                        95-MSE    106-MSE                    133-MSE   143-MSE                                                       205-MSE      218-MSE                    
                                                                                                                         107-MSE                                                                                                                                   

Chain C from PDB  Type:PROTEIN  Length:231
 aligned with PYRF_ECOLI | P08244 from UniProtKB/Swiss-Prot  Length:245

    Alignment length:231
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 
           PYRF_ECOLI    12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ 242
               SCOP domains d1jjkc_ C: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)                                                                                                                                                                 SCOP domains
               CATH domains 1jjkC00 C:12-242 Aldolase class I                                                                                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....hhhhhhhhhhhhhhhhheeeeehhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhhh.eeeee......hhhhhh......hhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhh...eeee.................hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------OMPDECASE     ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jjk C  12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEmFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWmVNVHASGGARmmTAAREALVPFGKDAPLLIAVTVLTSmEASDLVDLGmTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRImTPEQALSAGVDYmVIGRPVTQSVDPAQTLKAINASLQ 242
                                    21        31        41       |51        61        71        81        91   |   101    || 111       121       131 |     141 |     151       161       171       181       191       201   |   211      |221       231       241 
                                                                49-MSE                                        95-MSE    106-MSE                    133-MSE   143-MSE                                                       205-MSE      218-MSE                    
                                                                                                                         107-MSE                                                                                                                                   

Chain D from PDB  Type:PROTEIN  Length:231
 aligned with PYRF_ECOLI | P08244 from UniProtKB/Swiss-Prot  Length:245

    Alignment length:231
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 
           PYRF_ECOLI    12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ 242
               SCOP domains d1jjkd_ D: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)                                                                                                                                                                 SCOP domains
               CATH domains 1jjkD00 D:12-242 Aldolase class I                                                                                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....hhhhhhhhhhhhhhhhheeeeehhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhhh.eeeee......hhhhhh......hhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhh...eeee.................hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------OMPDECASE     ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jjk D  12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEmFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWmVNVHASGGARmmTAAREALVPFGKDAPLLIAVTVLTSmEASDLVDLGmTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRImTPEQALSAGVDYmVIGRPVTQSVDPAQTLKAINASLQ 242
                                    21        31        41       |51        61        71        81        91   |   101    || 111       121       131 |     141 |     151       161       171       181       191       201   |   211      |221       231       241 
                                                                49-MSE                                        95-MSE    106-MSE                    133-MSE   143-MSE                                                       205-MSE      218-MSE                    
                                                                                                                         107-MSE                                                                                                                                   

Chain E from PDB  Type:PROTEIN  Length:231
 aligned with PYRF_ECOLI | P08244 from UniProtKB/Swiss-Prot  Length:245

    Alignment length:231
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 
           PYRF_ECOLI    12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ 242
               SCOP domains d1jjke_ E: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)                                                                                                                                                                 SCOP domains
               CATH domains 1jjkE00 E:12-242 Aldolase class I                                                                                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....hhhhhhhhhhhhhhhhheeeeehhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhhh.eeeee......hhhhhh......hhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhh...eeee.................hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------OMPDECASE     ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jjk E  12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEmFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWmVNVHASGGARmmTAAREALVPFGKDAPLLIAVTVLTSmEASDLVDLGmTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRImTPEQALSAGVDYmVIGRPVTQSVDPAQTLKAINASLQ 242
                                    21        31        41       |51        61        71        81        91   |   101    || 111       121       131 |     141 |     151       161       171       181       191       201   |   211      |221       231       241 
                                                                49-MSE                                        95-MSE    106-MSE                    133-MSE   143-MSE                                                       205-MSE      218-MSE                    
                                                                                                                         107-MSE                                                                                                                                   

Chain F from PDB  Type:PROTEIN  Length:231
 aligned with PYRF_ECOLI | P08244 from UniProtKB/Swiss-Prot  Length:245

    Alignment length:231
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 
           PYRF_ECOLI    12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ 242
               SCOP domains d1jjkf_ F: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)                                                                                                                                                                 SCOP domains
               CATH domains 1jjkF00 F:12-242 Aldolase class I                                                                                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....hhhhhhhhhhhhhhhhheeeeehhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhhh.eeeee......hhhhhh......hhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhh...eeee.................hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------OMPDECASE     ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jjk F  12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEmFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWmVNVHASGGARmmTAAREALVPFGKDAPLLIAVTVLTSmEASDLVDLGmTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRImTPEQALSAGVDYmVIGRPVTQSVDPAQTLKAINASLQ 242
                                    21        31        41       |51        61        71        81        91   |   101    || 111       121       131 |     141 |     151       161       171       181       191       201   |   211      |221       231       241 
                                                                49-MSE                                        95-MSE    106-MSE                    133-MSE   143-MSE                                                       205-MSE      218-MSE                    
                                                                                                                         107-MSE                                                                                                                                   

Chain G from PDB  Type:PROTEIN  Length:231
 aligned with PYRF_ECOLI | P08244 from UniProtKB/Swiss-Prot  Length:245

    Alignment length:231
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 
           PYRF_ECOLI    12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ 242
               SCOP domains d1jjkg_ G: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)                                                                                                                                                                 SCOP domains
               CATH domains 1jjkG00 G:12-242 Aldolase class I                                                                                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....hhhhhhhhhhhhhhhhheeeeehhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhhh.eeeee......hhhhhh......hhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhh...eeee.................hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------OMPDECASE     ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jjk G  12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEmFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWmVNVHASGGARmmTAAREALVPFGKDAPLLIAVTVLTSmEASDLVDLGmTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRImTPEQALSAGVDYmVIGRPVTQSVDPAQTLKAINASLQ 242
                                    21        31        41       |51        61        71        81        91   |   101    || 111       121       131 |     141 |     151       161       171       181       191       201   |   211      |221       231       241 
                                                                49-MSE                                        95-MSE    106-MSE                    133-MSE   143-MSE                                                       205-MSE      218-MSE                    
                                                                                                                         107-MSE                                                                                                                                   

Chain H from PDB  Type:PROTEIN  Length:231
 aligned with PYRF_ECOLI | P08244 from UniProtKB/Swiss-Prot  Length:245

    Alignment length:231
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 
           PYRF_ECOLI    12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ 242
               SCOP domains d1jjkh_ H: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)                                                                                                                                                                 SCOP domains
               CATH domains 1jjkH00 H:12-242 Aldolase class I                                                                                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....hhhhhhhhhhhhhhhhheeeeehhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhhh.eeeee......hhhhhh......hhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhh...eeee.................hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------OMPDECASE     ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jjk H  12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEmFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWmVNVHASGGARmmTAAREALVPFGKDAPLLIAVTVLTSmEASDLVDLGmTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRImTPEQALSAGVDYmVIGRPVTQSVDPAQTLKAINASLQ 242
                                    21        31        41       |51        61        71        81        91   |   101    || 111       121       131 |     141 |     151       161       171       181       191       201   |   211      |221       231       241 
                                                                49-MSE                                        95-MSE    106-MSE                    133-MSE   143-MSE                                                       205-MSE      218-MSE                    
                                                                                                                         107-MSE                                                                                                                                   

Chain I from PDB  Type:PROTEIN  Length:231
 aligned with PYRF_ECOLI | P08244 from UniProtKB/Swiss-Prot  Length:245

    Alignment length:231
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 
           PYRF_ECOLI    12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ 242
               SCOP domains d1jjki_ I: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)                                                                                                                                                                 SCOP domains
               CATH domains 1jjkI00 I:12-242 Aldolase class I                                                                                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....hhhhhhhhhhhhhhhhheeeeehhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhhh.eeeee......hhhhhh......hhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhh...eeee.................hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------OMPDECASE     ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jjk I  12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEmFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWmVNVHASGGARmmTAAREALVPFGKDAPLLIAVTVLTSmEASDLVDLGmTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRImTPEQALSAGVDYmVIGRPVTQSVDPAQTLKAINASLQ 242
                                    21        31        41       |51        61        71        81        91   |   101    || 111       121       131 |     141 |     151       161       171       181       191       201   |   211      |221       231       241 
                                                                49-MSE                                        95-MSE    106-MSE                    133-MSE   143-MSE                                                       205-MSE      218-MSE                    
                                                                                                                         107-MSE                                                                                                                                   

Chain J from PDB  Type:PROTEIN  Length:231
 aligned with PYRF_ECOLI | P08244 from UniProtKB/Swiss-Prot  Length:245

    Alignment length:231
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 
           PYRF_ECOLI    12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ 242
               SCOP domains d1jjkj_ J: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)                                                                                                                                                                 SCOP domains
               CATH domains 1jjkJ00 J:12-242 Aldolase class I                                                                                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....hhhhhhhhhhhhhhhhheeeeehhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhhh.eeeee......hhhhhh......hhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhh...eeee.................hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------OMPDECASE     ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jjk J  12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEmFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWmVNVHASGGARmmTAAREALVPFGKDAPLLIAVTVLTSmEASDLVDLGmTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRImTPEQALSAGVDYmVIGRPVTQSVDPAQTLKAINASLQ 242
                                    21        31        41       |51        61        71        81        91   |   101    || 111       121       131 |     141 |     151       161       171       181       191       201   |   211      |221       231       241 
                                                                49-MSE                                        95-MSE    106-MSE                    133-MSE   143-MSE                                                       205-MSE      218-MSE                    
                                                                                                                         107-MSE                                                                                                                                   

Chain K from PDB  Type:PROTEIN  Length:231
 aligned with PYRF_ECOLI | P08244 from UniProtKB/Swiss-Prot  Length:245

    Alignment length:231
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 
           PYRF_ECOLI    12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ 242
               SCOP domains d1jjkk_ K: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)                                                                                                                                                                 SCOP domains
               CATH domains 1jjkK00 K:12-242 Aldolase class I                                                                                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....hhhhhhhhhhhhhhhhheeeeehhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhhh.eeeee......hhhhhh......hhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhh...eeee.................hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------OMPDECASE     ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jjk K  12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEmFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWmVNVHASGGARmmTAAREALVPFGKDAPLLIAVTVLTSmEASDLVDLGmTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRImTPEQALSAGVDYmVIGRPVTQSVDPAQTLKAINASLQ 242
                                    21        31        41       |51        61        71        81        91   |   101    || 111       121       131 |     141 |     151       161       171       181       191       201   |   211      |221       231       241 
                                                                49-MSE                                        95-MSE    106-MSE                    133-MSE   143-MSE                                                       205-MSE      218-MSE                    
                                                                                                                         107-MSE                                                                                                                                   

Chain L from PDB  Type:PROTEIN  Length:231
 aligned with PYRF_ECOLI | P08244 from UniProtKB/Swiss-Prot  Length:245

    Alignment length:231
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 
           PYRF_ECOLI    12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ 242
               SCOP domains d1jjkl_ L: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)                                                                                                                                                                 SCOP domains
               CATH domains 1jjkL00 L:12-242 Aldolase class I                                                                                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....hhhhhhhhhhhhhhhhheeeeehhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhhh.eeeee......hhhhhh......hhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhh...eeee.................hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------OMPDECASE     ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jjk L  12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEmFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWmVNVHASGGARmmTAAREALVPFGKDAPLLIAVTVLTSmEASDLVDLGmTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRImTPEQALSAGVDYmVIGRPVTQSVDPAQTLKAINASLQ 242
                                    21        31        41       |51        61        71        81        91   |   101    || 111       121       131 |     141 |     151       161       171       181       191       201   |   211      |221       231       241 
                                                                49-MSE                                        95-MSE    106-MSE                    133-MSE   143-MSE                                                       205-MSE      218-MSE                    
                                                                                                                         107-MSE                                                                                                                                   

Chain M from PDB  Type:PROTEIN  Length:231
 aligned with PYRF_ECOLI | P08244 from UniProtKB/Swiss-Prot  Length:245

    Alignment length:231
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 
           PYRF_ECOLI    12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ 242
               SCOP domains d1jjkm_ M: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)                                                                                                                                                                 SCOP domains
               CATH domains 1jjkM00 M:12-242 Aldolase class I                                                                                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....hhhhhhhhhhhhhhhhheeeeehhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhhh.eeeee......hhhhhh......hhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhh...eeee.................hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------OMPDECASE     ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jjk M  12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEmFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWmVNVHASGGARmmTAAREALVPFGKDAPLLIAVTVLTSmEASDLVDLGmTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRImTPEQALSAGVDYmVIGRPVTQSVDPAQTLKAINASLQ 242
                                    21        31        41       |51        61        71        81        91   |   101    || 111       121       131 |     141 |     151       161       171       181       191       201   |   211      |221       231       241 
                                                                49-MSE                                        95-MSE    106-MSE                    133-MSE   143-MSE                                                       205-MSE      218-MSE                    
                                                                                                                         107-MSE                                                                                                                                   

Chain N from PDB  Type:PROTEIN  Length:231
 aligned with PYRF_ECOLI | P08244 from UniProtKB/Swiss-Prot  Length:245

    Alignment length:231
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 
           PYRF_ECOLI    12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ 242
               SCOP domains d1jjkn_ N: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)                                                                                                                                                                 SCOP domains
               CATH domains 1jjkN00 N:12-242 Aldolase class I                                                                                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....hhhhhhhhhhhhhhhhheeeeehhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhhh.eeeee......hhhhhh......hhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhh...eeee.................hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------OMPDECASE     ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jjk N  12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEmFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWmVNVHASGGARmmTAAREALVPFGKDAPLLIAVTVLTSmEASDLVDLGmTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRImTPEQALSAGVDYmVIGRPVTQSVDPAQTLKAINASLQ 242
                                    21        31        41       |51        61        71        81        91   |   101    || 111       121       131 |     141 |     151       161       171       181       191       201   |   211      |221       231       241 
                                                                49-MSE                                        95-MSE    106-MSE                    133-MSE   143-MSE                                                       205-MSE      218-MSE                    
                                                                                                                         107-MSE                                                                                                                                   

Chain O from PDB  Type:PROTEIN  Length:231
 aligned with PYRF_ECOLI | P08244 from UniProtKB/Swiss-Prot  Length:245

    Alignment length:231
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 
           PYRF_ECOLI    12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ 242
               SCOP domains d1jjko_ O: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)                                                                                                                                                                 SCOP domains
               CATH domains 1jjkO00 O:12-242 Aldolase class I                                                                                                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....hhhhhhhhhhhhhhhhheeeeehhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhhh.eeeee......hhhhhh......hhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhh...eeee.................hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------OMPDECASE     ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jjk O  12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEmFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWmVNVHASGGARmmTAAREALVPFGKDAPLLIAVTVLTSmEASDLVDLGmTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRImTPEQALSAGVDYmVIGRPVTQSVDPAQTLKAINASLQ 242
                                    21        31        41       |51        61        71        81        91   |   101    || 111       121       131 |     141 |     151       161       171       181       191       201   |   211      |221       231       241 
                                                                49-MSE                                        95-MSE    106-MSE                    133-MSE   143-MSE                                                       205-MSE      218-MSE                    
                                                                                                                         107-MSE                                                                                                                                   

Chain P from PDB  Type:PROTEIN  Length:231
 aligned with PYRF_ECOLI | P08244 from UniProtKB/Swiss-Prot  Length:245

    Alignment length:231
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 
           PYRF_ECOLI    12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ 242
               SCOP domains d1jjkp_ P: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)                                                                                                                                                                 SCOP domains
               CATH domains 1jjkP00 P:12-242 Aldolase class I                                                                                                                                                                                                       CATH domains
           Pfam domains (1) ---OMPdecase-1jjkP01 P:15-237                                                                                                                                                                                                     ----- Pfam domains (1)
           Pfam domains (2) ---OMPdecase-1jjkP02 P:15-237                                                                                                                                                                                                     ----- Pfam domains (2)
           Pfam domains (3) ---OMPdecase-1jjkP03 P:15-237                                                                                                                                                                                                     ----- Pfam domains (3)
           Pfam domains (4) ---OMPdecase-1jjkP04 P:15-237                                                                                                                                                                                                     ----- Pfam domains (4)
           Pfam domains (5) ---OMPdecase-1jjkP05 P:15-237                                                                                                                                                                                                     ----- Pfam domains (5)
           Pfam domains (6) ---OMPdecase-1jjkP06 P:15-237                                                                                                                                                                                                     ----- Pfam domains (6)
           Pfam domains (7) ---OMPdecase-1jjkP07 P:15-237                                                                                                                                                                                                     ----- Pfam domains (7)
           Pfam domains (8) ---OMPdecase-1jjkP08 P:15-237                                                                                                                                                                                                     ----- Pfam domains (8)
           Pfam domains (9) ---OMPdecase-1jjkP09 P:15-237                                                                                                                                                                                                     ----- Pfam domains (9)
          Pfam domains (10) ---OMPdecase-1jjkP10 P:15-237                                                                                                                                                                                                     ----- Pfam domains (10)
          Pfam domains (11) ---OMPdecase-1jjkP11 P:15-237                                                                                                                                                                                                     ----- Pfam domains (11)
          Pfam domains (12) ---OMPdecase-1jjkP12 P:15-237                                                                                                                                                                                                     ----- Pfam domains (12)
          Pfam domains (13) ---OMPdecase-1jjkP13 P:15-237                                                                                                                                                                                                     ----- Pfam domains (13)
          Pfam domains (14) ---OMPdecase-1jjkP14 P:15-237                                                                                                                                                                                                     ----- Pfam domains (14)
          Pfam domains (15) ---OMPdecase-1jjkP15 P:15-237                                                                                                                                                                                                     ----- Pfam domains (15)
          Pfam domains (16) ---OMPdecase-1jjkP16 P:15-237                                                                                                                                                                                                     ----- Pfam domains (16)
         Sec.struct. author .....eeee....hhhhhhhhhhhhhhhhheeeeehhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhhh.eeeee......hhhhhh......hhhhhhhhhhhhhhhh...eee.hhhhhhhhhhhhh...eeee.................hhhhhhhhh..eeeehhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------OMPDECASE     ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1jjk P  12 VTNSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEmFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWmVNVHASGGARmmTAAREALVPFGKDAPLLIAVTVLTSmEASDLVDLGmTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRImTPEQALSAGVDYmVIGRPVTQSVDPAQTLKAINASLQ 242
                                    21        31        41       |51        61        71        81        91   |   101    || 111       121       131 |     141 |     151       161       171       181       191       201   |   211      |221       231       241 
                                                                49-MSE                                        95-MSE    106-MSE                    133-MSE   143-MSE                                                       205-MSE      218-MSE                    
                                                                                                                         107-MSE                                                                                                                                   

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 16)

Asymmetric Unit

(-) CATH Domains  (1, 16)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
1a1jjkA00A:12-242
1b1jjkB00B:12-242
1c1jjkC00C:12-242
1d1jjkD00D:12-242
1e1jjkE00E:12-242
1f1jjkF00F:12-242
1g1jjkG00G:12-242
1h1jjkH00H:12-242
1i1jjkI00I:12-242
1j1jjkJ00J:12-242
1k1jjkK00K:12-242
1l1jjkL00L:12-242
1m1jjkM00M:12-242
1n1jjkN00N:12-242
1o1jjkO00O:12-242
1p1jjkP00P:12-242

(-) Pfam Domains  (1, 16)

Asymmetric Unit

(-) Gene Ontology  (12, 12)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P   (PYRF_ECOLI | P08244)
molecular function
    GO:0016831    carboxy-lyase activity    Catalysis of the nonhydrolytic addition or removal of a carboxyl group to or from a compound.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0004590    orotidine-5'-phosphate decarboxylase activity    Catalysis of the reaction: H(+) + orotidine 5'-phosphate = CO(2) + UMP.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0044205    'de novo' UMP biosynthetic process    The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate, starting with the synthesis of (S)-dihydroorotate from bicarbonate; UMP biosynthesis may either occur via reduction by quinone, NAD(+) or oxygen.
    GO:0006207    'de novo' pyrimidine nucleobase biosynthetic process    The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0015949    nucleobase-containing small molecule interconversion    The chemical reactions and pathways by which a nucleobase, nucleoside or nucleotide small molecule is synthesized from another nucleobase, nucleoside or nucleotide small molecule.
    GO:0006221    pyrimidine nucleotide biosynthetic process    The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    BMP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1jjk)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]
    Biological Unit 5  [ Jena3D ]
    Biological Unit 6  [ Jena3D ]
    Biological Unit 7  [ Jena3D ]
    Biological Unit 8  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1jjk
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  PYRF_ECOLI | P08244
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  4.1.1.23
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  PYRF_ECOLI | P08244
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PYRF_ECOLI | P082441eix 1l2u

(-) Related Entries Specified in the PDB File

1eix 1EIX CONTAINS THE NATIVE PROTEIN