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1JJK
Biol. Unit 4
Info
Asym.Unit (591 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (81 KB)
Biol.Unit 3 (81 KB)
Biol.Unit 4 (81 KB)
Biol.Unit 5 (81 KB)
Biol.Unit 6 (81 KB)
Biol.Unit 7 (81 KB)
Biol.Unit 8 (81 KB)
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(1)
Title
:
SELENOMETHIONINE SUBSTITUTION OF OROTIDINE-5'-MONOPHOSPHATE DECARBOXYLASE FROM E. COLI CAUSES A CHANGE IN CRYSTAL CONTACTS AND SPACE GROUP
Authors
:
J. -C. N. Poulsen, P. Harris, K. F. Jensen, S. Larsen
Date
:
06 Jul 01 (Deposition) - 01 Aug 01 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: K,L (1x)
Biol. Unit 7: M,N (1x)
Biol. Unit 8: O,P (1x)
Keywords
:
Alpha-Beta-Barrel, Protein-Inhibitor Complex, Homodimer, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. C. Poulsen, P. Harris, K. F. Jensen, S. Larsen
Selenomethionine Substitution Of Orotidine-5'-Monophosphate Decarboxylase Causes A Change In Crystal Contacts And Space Group.
Acta Crystallogr. , Sect. D V. 57 1251 2001
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(2, 18)
Info
All Hetero Components
1a: 6-HYDROXYURIDINE-5'-PHOSPHATE (BMPa)
1b: 6-HYDROXYURIDINE-5'-PHOSPHATE (BMPb)
1c: 6-HYDROXYURIDINE-5'-PHOSPHATE (BMPc)
1d: 6-HYDROXYURIDINE-5'-PHOSPHATE (BMPd)
1e: 6-HYDROXYURIDINE-5'-PHOSPHATE (BMPe)
1f: 6-HYDROXYURIDINE-5'-PHOSPHATE (BMPf)
1g: 6-HYDROXYURIDINE-5'-PHOSPHATE (BMPg)
1h: 6-HYDROXYURIDINE-5'-PHOSPHATE (BMPh)
1i: 6-HYDROXYURIDINE-5'-PHOSPHATE (BMPi)
1j: 6-HYDROXYURIDINE-5'-PHOSPHATE (BMPj)
1k: 6-HYDROXYURIDINE-5'-PHOSPHATE (BMPk)
1l: 6-HYDROXYURIDINE-5'-PHOSPHATE (BMPl)
1m: 6-HYDROXYURIDINE-5'-PHOSPHATE (BMPm)
1n: 6-HYDROXYURIDINE-5'-PHOSPHATE (BMPn)
1o: 6-HYDROXYURIDINE-5'-PHOSPHATE (BMPo)
1p: 6-HYDROXYURIDINE-5'-PHOSPHATE (BMPp)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2aj: SELENOMETHIONINE (MSEaj)
2ak: SELENOMETHIONINE (MSEak)
2al: SELENOMETHIONINE (MSEal)
2am: SELENOMETHIONINE (MSEam)
2an: SELENOMETHIONINE (MSEan)
2ao: SELENOMETHIONINE (MSEao)
2ap: SELENOMETHIONINE (MSEap)
2aq: SELENOMETHIONINE (MSEaq)
2ar: SELENOMETHIONINE (MSEar)
2as: SELENOMETHIONINE (MSEas)
2at: SELENOMETHIONINE (MSEat)
2au: SELENOMETHIONINE (MSEau)
2av: SELENOMETHIONINE (MSEav)
2aw: SELENOMETHIONINE (MSEaw)
2ax: SELENOMETHIONINE (MSEax)
2ay: SELENOMETHIONINE (MSEay)
2az: SELENOMETHIONINE (MSEaz)
2b: SELENOMETHIONINE (MSEb)
2ba: SELENOMETHIONINE (MSEba)
2bb: SELENOMETHIONINE (MSEbb)
2bc: SELENOMETHIONINE (MSEbc)
2bd: SELENOMETHIONINE (MSEbd)
2be: SELENOMETHIONINE (MSEbe)
2bf: SELENOMETHIONINE (MSEbf)
2bg: SELENOMETHIONINE (MSEbg)
2bh: SELENOMETHIONINE (MSEbh)
2bi: SELENOMETHIONINE (MSEbi)
2bj: SELENOMETHIONINE (MSEbj)
2bk: SELENOMETHIONINE (MSEbk)
2bl: SELENOMETHIONINE (MSEbl)
2bm: SELENOMETHIONINE (MSEbm)
2bn: SELENOMETHIONINE (MSEbn)
2bo: SELENOMETHIONINE (MSEbo)
2bp: SELENOMETHIONINE (MSEbp)
2bq: SELENOMETHIONINE (MSEbq)
2br: SELENOMETHIONINE (MSEbr)
2bs: SELENOMETHIONINE (MSEbs)
2bt: SELENOMETHIONINE (MSEbt)
2bu: SELENOMETHIONINE (MSEbu)
2bv: SELENOMETHIONINE (MSEbv)
2bw: SELENOMETHIONINE (MSEbw)
2bx: SELENOMETHIONINE (MSEbx)
2by: SELENOMETHIONINE (MSEby)
2bz: SELENOMETHIONINE (MSEbz)
2c: SELENOMETHIONINE (MSEc)
2ca: SELENOMETHIONINE (MSEca)
2cb: SELENOMETHIONINE (MSEcb)
2cc: SELENOMETHIONINE (MSEcc)
2cd: SELENOMETHIONINE (MSEcd)
2ce: SELENOMETHIONINE (MSEce)
2cf: SELENOMETHIONINE (MSEcf)
2cg: SELENOMETHIONINE (MSEcg)
2ch: SELENOMETHIONINE (MSEch)
2ci: SELENOMETHIONINE (MSEci)
2cj: SELENOMETHIONINE (MSEcj)
2ck: SELENOMETHIONINE (MSEck)
2cl: SELENOMETHIONINE (MSEcl)
2cm: SELENOMETHIONINE (MSEcm)
2cn: SELENOMETHIONINE (MSEcn)
2co: SELENOMETHIONINE (MSEco)
2cp: SELENOMETHIONINE (MSEcp)
2cq: SELENOMETHIONINE (MSEcq)
2cr: SELENOMETHIONINE (MSEcr)
2cs: SELENOMETHIONINE (MSEcs)
2ct: SELENOMETHIONINE (MSEct)
2cu: SELENOMETHIONINE (MSEcu)
2cv: SELENOMETHIONINE (MSEcv)
2cw: SELENOMETHIONINE (MSEcw)
2cx: SELENOMETHIONINE (MSEcx)
2cy: SELENOMETHIONINE (MSEcy)
2cz: SELENOMETHIONINE (MSEcz)
2d: SELENOMETHIONINE (MSEd)
2da: SELENOMETHIONINE (MSEda)
2db: SELENOMETHIONINE (MSEdb)
2dc: SELENOMETHIONINE (MSEdc)
2dd: SELENOMETHIONINE (MSEdd)
2de: SELENOMETHIONINE (MSEde)
2df: SELENOMETHIONINE (MSEdf)
2dg: SELENOMETHIONINE (MSEdg)
2dh: SELENOMETHIONINE (MSEdh)
2di: SELENOMETHIONINE (MSEdi)
2dj: SELENOMETHIONINE (MSEdj)
2dk: SELENOMETHIONINE (MSEdk)
2dl: SELENOMETHIONINE (MSEdl)
2dm: SELENOMETHIONINE (MSEdm)
2dn: SELENOMETHIONINE (MSEdn)
2do: SELENOMETHIONINE (MSEdo)
2dp: SELENOMETHIONINE (MSEdp)
2dq: SELENOMETHIONINE (MSEdq)
2dr: SELENOMETHIONINE (MSEdr)
2ds: SELENOMETHIONINE (MSEds)
2dt: SELENOMETHIONINE (MSEdt)
2du: SELENOMETHIONINE (MSEdu)
2dv: SELENOMETHIONINE (MSEdv)
2dw: SELENOMETHIONINE (MSEdw)
2dx: SELENOMETHIONINE (MSEdx)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMP
2
Ligand/Ion
6-HYDROXYURIDINE-5'-PHOSPHATE
2
MSE
16
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC7 (SOFTWARE)
2: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC7
SOFTWARE
ALA G:20 , ASP G:22 , LYS G:44 , ASP G:71 , LYS G:73 , LEU G:130 , THR G:131 , PRO G:189 , ARG G:192 , GLN G:201 , GLY G:221 , ARG G:222 , ASP H:76 , ILE H:77 , THR H:80
BINDING SITE FOR RESIDUE BMP G 307
2
AC8
SOFTWARE
ASP G:76 , ILE G:77 , THR G:80 , ALA H:20 , ASP H:22 , LYS H:44 , ASP H:71 , LYS H:73 , LEU H:130 , THR H:131 , PRO H:189 , ARG H:192 , GLN H:201 , GLY H:221 , ARG H:222
BINDING SITE FOR RESIDUE BMP H 308
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: OMPDECASE (G:68-81,H:68-81)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
OMPDECASE
PS00156
Orotidine 5'-phosphate decarboxylase active site.
PYRF_ECOLI
68-81
2
-
-
-
-
-
-
G:68-81
H:68-81
-
-
-
-
-
-
-
-
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d1jjka_ (A:)
1b: SCOP_d1jjke_ (E:)
1c: SCOP_d1jjkf_ (F:)
1d: SCOP_d1jjkg_ (G:)
1e: SCOP_d1jjkh_ (H:)
1f: SCOP_d1jjki_ (I:)
1g: SCOP_d1jjkj_ (J:)
1h: SCOP_d1jjkk_ (K:)
1i: SCOP_d1jjkl_ (L:)
1j: SCOP_d1jjkm_ (M:)
1k: SCOP_d1jjkn_ (N:)
1l: SCOP_d1jjko_ (O:)
1m: SCOP_d1jjkp_ (P:)
1n: SCOP_d1jjkb_ (B:)
1o: SCOP_d1jjkc_ (C:)
1p: SCOP_d1jjkd_ (D:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Ribulose-phoshate binding barrel
(356)
Family
:
Decarboxylase
(172)
Protein domain
:
Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
(28)
Escherichia coli [TaxId: 562]
(3)
1a
d1jjka_
A:
1b
d1jjke_
E:
1c
d1jjkf_
F:
1d
d1jjkg_
G:
1e
d1jjkh_
H:
1f
d1jjki_
I:
1g
d1jjkj_
J:
1h
d1jjkk_
K:
1i
d1jjkl_
L:
1j
d1jjkm_
M:
1k
d1jjkn_
N:
1l
d1jjko_
O:
1m
d1jjkp_
P:
1n
d1jjkb_
B:
1o
d1jjkc_
C:
1p
d1jjkd_
D:
[
close SCOP info
]
CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_1jjkA00 (A:12-242)
1b: CATH_1jjkB00 (B:12-242)
1c: CATH_1jjkC00 (C:12-242)
1d: CATH_1jjkD00 (D:12-242)
1e: CATH_1jjkE00 (E:12-242)
1f: CATH_1jjkF00 (F:12-242)
1g: CATH_1jjkG00 (G:12-242)
1h: CATH_1jjkH00 (H:12-242)
1i: CATH_1jjkI00 (I:12-242)
1j: CATH_1jjkJ00 (J:12-242)
1k: CATH_1jjkK00 (K:12-242)
1l: CATH_1jjkL00 (L:12-242)
1m: CATH_1jjkM00 (M:12-242)
1n: CATH_1jjkN00 (N:12-242)
1o: CATH_1jjkO00 (O:12-242)
1p: CATH_1jjkP00 (P:12-242)
View:
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(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Escherichia coli. Organism_taxid: 562.
(44)
1a
1jjkA00
A:12-242
1b
1jjkB00
B:12-242
1c
1jjkC00
C:12-242
1d
1jjkD00
D:12-242
1e
1jjkE00
E:12-242
1f
1jjkF00
F:12-242
1g
1jjkG00
G:12-242
1h
1jjkH00
H:12-242
1i
1jjkI00
I:12-242
1j
1jjkJ00
J:12-242
1k
1jjkK00
K:12-242
1l
1jjkL00
L:12-242
1m
1jjkM00
M:12-242
1n
1jjkN00
N:12-242
1o
1jjkO00
O:12-242
1p
1jjkP00
P:12-242
[
close CATH info
]
Pfam Domains
(1, 16)
Info
all PFAM domains
1a: PFAM_OMPdecase_1jjkP01 (P:15-237)
1b: PFAM_OMPdecase_1jjkP02 (P:15-237)
1c: PFAM_OMPdecase_1jjkP03 (P:15-237)
1d: PFAM_OMPdecase_1jjkP04 (P:15-237)
1e: PFAM_OMPdecase_1jjkP05 (P:15-237)
1f: PFAM_OMPdecase_1jjkP06 (P:15-237)
1g: PFAM_OMPdecase_1jjkP07 (P:15-237)
1h: PFAM_OMPdecase_1jjkP08 (P:15-237)
1i: PFAM_OMPdecase_1jjkP09 (P:15-237)
1j: PFAM_OMPdecase_1jjkP10 (P:15-237)
1k: PFAM_OMPdecase_1jjkP11 (P:15-237)
1l: PFAM_OMPdecase_1jjkP12 (P:15-237)
1m: PFAM_OMPdecase_1jjkP13 (P:15-237)
1n: PFAM_OMPdecase_1jjkP14 (P:15-237)
1o: PFAM_OMPdecase_1jjkP15 (P:15-237)
1p: PFAM_OMPdecase_1jjkP16 (P:15-237)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
TIM_barrel
(694)
Family
:
OMPdecase
(84)
Escherichia coli (strain K12)
(14)
1a
OMPdecase-1jjkP01
P:15-237
1b
OMPdecase-1jjkP02
P:15-237
1c
OMPdecase-1jjkP03
P:15-237
1d
OMPdecase-1jjkP04
P:15-237
1e
OMPdecase-1jjkP05
P:15-237
1f
OMPdecase-1jjkP06
P:15-237
1g
OMPdecase-1jjkP07
P:15-237
1h
OMPdecase-1jjkP08
P:15-237
1i
OMPdecase-1jjkP09
P:15-237
1j
OMPdecase-1jjkP10
P:15-237
1k
OMPdecase-1jjkP11
P:15-237
1l
OMPdecase-1jjkP12
P:15-237
1m
OMPdecase-1jjkP13
P:15-237
1n
OMPdecase-1jjkP14
P:15-237
1o
OMPdecase-1jjkP15
P:15-237
1p
OMPdecase-1jjkP16
P:15-237
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