1JDS - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   5'-DEOXY-5'-METHYLTHIOADENOSINE PHOSPHORYLASE COMPLEX WITH PHOSPHATE (SPACE GROUP P21)

Authors :   T. C. Appleby, I. I. Mathews, M. Porcelli, G. Cacciapuoti, S. E. Ealick

Date :   15 Jun 01 (Deposition) - 26 Oct 01 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A,B,C,D,E,F

Keywords :   Alpha-Beta Protein, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. C. Appleby, I. I. Mathews, M. Porcelli, G. Cacciapuoti, S. E. Ealick
Three-Dimensional Structure Of A Hyperthermophilic 5'-Deoxy-5'-Methylthioadenosine Phosphorylase From Sulfolobus Solfataricus.
J. Biol. Chem. V. 276 39232 2001
PubMed-ID: 11489901 | Reference-DOI: 10.1074/JBC.M105694200
(for further references see the PDB file header)

Molecule 1 - 5'-METHYLTHIOADENOSINE PHOSPHORYLASE
	Chains	:	A, B, C, D, E, F
	EC Number	:	2.4.2.28
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	SULFOLOBUS SOLFATARICUS
	Organism Taxid	:	2287
	Synonym	:	MTA PHOSPHORYLASE; MTAP

		1	2	3	4	5	6
Asymmetric/Biological Unit	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 12)

No.	Name	Count	Type	Full Name
1	PO4	6	Ligand/Ion	PHOSPHATE ION
2	TRS	6	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:21 , ARG A:25 , ARG A:86 , GLY A:88 , THR A:89 , HOH A:607 , TRS A:1270 , ARG D:43	BINDING SITE FOR RESIDUE PO4 A 1250
02	AC2	SOFTWARE	GLY B:21 , ARG B:25 , ARG B:86 , GLY B:88 , THR B:89 , HOH B:599 , TRS B:2270 , ARG C:43	BINDING SITE FOR RESIDUE PO4 B 2250
03	AC3	SOFTWARE	ARG B:43 , GLY C:21 , ARG C:25 , ARG C:86 , GLY C:88 , THR C:89 , HOH C:593 , TRS C:3270	BINDING SITE FOR RESIDUE PO4 C 3250
04	AC4	SOFTWARE	ARG A:43 , GLY D:21 , ARG D:25 , ARG D:86 , GLY D:88 , THR D:89 , HOH D:604 , TRS D:4270	BINDING SITE FOR RESIDUE PO4 D 4250
05	AC5	SOFTWARE	GLY E:21 , ARG E:25 , ARG E:86 , GLY E:88 , THR E:89 , HOH E:595 , TRS E:5270 , ARG F:43	BINDING SITE FOR RESIDUE PO4 E 5250
06	AC6	SOFTWARE	ARG E:43 , GLY F:21 , ARG F:25 , ARG F:86 , GLY F:88 , THR F:89 , HOH F:594 , TRS F:6270	BINDING SITE FOR RESIDUE PO4 F 6250
07	AC7	SOFTWARE	ARG A:86 , THR A:89 , GLU A:180 , MET A:181 , GLU A:182 , PO4 A:1250 , HIS D:5 , ARG D:43	BINDING SITE FOR RESIDUE TRS A 1270
08	AC8	SOFTWARE	ARG B:86 , THR B:89 , GLU B:180 , MET B:181 , GLU B:182 , PO4 B:2250 , HIS C:5	BINDING SITE FOR RESIDUE TRS B 2270
09	AC9	SOFTWARE	HIS B:5 , ARG C:86 , THR C:89 , GLU C:180 , MET C:181 , GLU C:182 , PO4 C:3250	BINDING SITE FOR RESIDUE TRS C 3270
10	BC1	SOFTWARE	HIS A:5 , ARG D:86 , THR D:89 , GLU D:180 , MET D:181 , GLU D:182 , PO4 D:4250	BINDING SITE FOR RESIDUE TRS D 4270
11	BC2	SOFTWARE	ARG E:86 , THR E:89 , GLU E:180 , MET E:181 , GLU E:182 , PO4 E:5250 , HIS F:5	BINDING SITE FOR RESIDUE TRS E 5270
12	BC3	SOFTWARE	HIS E:5 , ARG F:86 , THR F:89 , GLU F:180 , MET F:181 , GLU F:182 , PO4 F:6250	BINDING SITE FOR RESIDUE TRS F 6270

Asymmetric/Biological Unit

No.	Residues
1	A:125	-	C:125
2	B:125	-	E:125
3	D:125	-	F:125

(no "Cis Peptide Bond" information available for 1JDS)

(no "SAP(SNP)/Variant" information available for 1JDS)

Asymmetric/Biological Unit (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PNP_UDP_1	PS01232	Purine and other phosphorylases family 1 signature.	PNPH_SULSO	61-76	6	A:61-76 B:61-76 C:61-76 D:61-76 E:61-76 F:61-76

(no "Exon" information available for 1JDS)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:226
 aligned with PNPH_SULSO | P50389 from UniProtKB/Swiss-Prot  Length:236

    Alignment length:234
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232    
           PNPH_SULSO     3 PVHILAKKGEVAERVLVVGDPGRARLLSTLLQNPKLTNENRGFLVYTGKYNGETVSIATHGIGGPSIAIVLEELAMLGANVFIRYGTTGALVPYINLGEYIIVTGASYNQGGLFYQYLRDNACVASTPDFELTNKLVTSFSKRNLKYYVGNVFSSDAFYAEDEEFVKKWSSRGNIAVEMECATLFTLSKVKGWKSATVLVVSDNLAKGGIWITKEELEKSVMDGAKAVLDTLTS 236
               SCOP domains d1jdsa_ A: 5'-deoxy-5'-methylthioadenosine phosphorylase                                                                                                                                                                                   SCOP domains
               CATH domains 1jdsA00 A:3-236  [code=3.40.50.1580, no name defined]                                                                                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eeeee.hhhhhhhhhhhheeeeeeehhhhh.eeeeee..eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeee.........eeeeeeee...hhhhhhhhh.........hhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhhh..eeeee.hhhhhhhhhhhhh.eeeeeeeeeee...--------hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------PNP_UDP_1       ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1jds A   3 PVHILAKKGEVAERVLVVGDPGRARLLSTLLQNPKLTNENRGFLVYTGKYNGETVSIATHGIGGPSIAIVLEELAMLGANVFIRYGTTGALVPYINLGEYIIVTGASYNQGGLFYQYLRDNACVASTPDFELTNKLVTSFSKRNLKYYVGNVFSSDAFYAEDEEFVKKWSSRGNIAVEMECATLFTLSKVKGWKSATVLVVSDNLAK--------ELEKSVMDGAKAVLDTLTS 236
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202      |  -     | 222       232    
                                                                                                                                                                                                                                        209      218

Chain B from PDB  Type:PROTEIN  Length:226
 aligned with PNPH_SULSO | P50389 from UniProtKB/Swiss-Prot  Length:236

    Alignment length:234
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232    
           PNPH_SULSO     3 PVHILAKKGEVAERVLVVGDPGRARLLSTLLQNPKLTNENRGFLVYTGKYNGETVSIATHGIGGPSIAIVLEELAMLGANVFIRYGTTGALVPYINLGEYIIVTGASYNQGGLFYQYLRDNACVASTPDFELTNKLVTSFSKRNLKYYVGNVFSSDAFYAEDEEFVKKWSSRGNIAVEMECATLFTLSKVKGWKSATVLVVSDNLAKGGIWITKEELEKSVMDGAKAVLDTLTS 236
               SCOP domains d1jdsb_ B: 5'-deoxy-5'-methylthioadenosine phosphorylase                                                                                                                                                                                   SCOP domains
               CATH domains 1jdsB00 B:3-236  [code=3.40.50.1580, no name defined]                                                                                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eeeee.hhhhhhhhhh..eeeeeeehhhhh.eeeeee..eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeee.........eeeeeeee...hhhhhhhhh.........hhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhhh..eeeee.hhhhhhhhhhhhh.eeeeeeeeeee...--------hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------PNP_UDP_1       ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1jds B   3 PVHILAKKGEVAERVLVVGDPGRARLLSTLLQNPKLTNENRGFLVYTGKYNGETVSIATHGIGGPSIAIVLEELAMLGANVFIRYGTTGALVPYINLGEYIIVTGASYNQGGLFYQYLRDNACVASTPDFELTNKLVTSFSKRNLKYYVGNVFSSDAFYAEDEEFVKKWSSRGNIAVEMECATLFTLSKVKGWKSATVLVVSDNLAK--------ELEKSVMDGAKAVLDTLTS 236
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202      |  -     | 222       232    
                                                                                                                                                                                                                                        209      218

Chain C from PDB  Type:PROTEIN  Length:234
 aligned with PNPH_SULSO | P50389 from UniProtKB/Swiss-Prot  Length:236

    Alignment length:234
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232    
           PNPH_SULSO     3 PVHILAKKGEVAERVLVVGDPGRARLLSTLLQNPKLTNENRGFLVYTGKYNGETVSIATHGIGGPSIAIVLEELAMLGANVFIRYGTTGALVPYINLGEYIIVTGASYNQGGLFYQYLRDNACVASTPDFELTNKLVTSFSKRNLKYYVGNVFSSDAFYAEDEEFVKKWSSRGNIAVEMECATLFTLSKVKGWKSATVLVVSDNLAKGGIWITKEELEKSVMDGAKAVLDTLTS 236
               SCOP domains d1jdsc_ C: 5'-deoxy-5'-methylthioadenosine phosphorylase                                                                                                                                                                                   SCOP domains
               CATH domains 1jdsC00 C:3-236  [code=3.40.50.1580, no name defined]                                                                                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eeeee.hhhhhhhhhhhheeeeeeehhhhh.eeeeee..eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeee.........eeeeeeee...hhhhhhhhh.........hhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhhhh.eeeee.hhhhhhhhhhhhh.eeeeeeeeeee........hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------PNP_UDP_1       ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1jds C   3 PVHILAKKGEVAERVLVVGDPGRARLLSTLLQNPKLTNENRGFLVYTGKYNGETVSIATHGIGGPSIAIVLEELAMLGANVFIRYGTTGALVPYINLGEYIIVTGASYNQGGLFYQYLRDNACVASTPDFELTNKLVTSFSKRNLKYYVGNVFSSDAFYAEDEEFVKKWSSRGNIAVEMECATLFTLSKVKGWKSATVLVVSDNLAKGGIWITKEELEKSVMDGAKAVLDTLTS 236
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232

Chain D from PDB  Type:PROTEIN  Length:226
 aligned with PNPH_SULSO | P50389 from UniProtKB/Swiss-Prot  Length:236

    Alignment length:234
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232    
           PNPH_SULSO     3 PVHILAKKGEVAERVLVVGDPGRARLLSTLLQNPKLTNENRGFLVYTGKYNGETVSIATHGIGGPSIAIVLEELAMLGANVFIRYGTTGALVPYINLGEYIIVTGASYNQGGLFYQYLRDNACVASTPDFELTNKLVTSFSKRNLKYYVGNVFSSDAFYAEDEEFVKKWSSRGNIAVEMECATLFTLSKVKGWKSATVLVVSDNLAKGGIWITKEELEKSVMDGAKAVLDTLTS 236
               SCOP domains d1jdsd_ D: 5'-deoxy-5'-methylthioadenosine phosphorylase                                                                                                                                                                                   SCOP domains
               CATH domains 1jdsD00 D:3-236  [code=3.40.50.1580, no name defined]                                                                                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eeeee.hhhhhhhhhhhheeeeeeehhhhh.eeeeee..eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeee.........eeeeeeee...hhhhhhhhh.........hhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhhh..eeeee.hhhhhhhhhhhhh.eeeeeeeeeee...--------hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------PNP_UDP_1       ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1jds D   3 PVHILAKKGEVAERVLVVGDPGRARLLSTLLQNPKLTNENRGFLVYTGKYNGETVSIATHGIGGPSIAIVLEELAMLGANVFIRYGTTGALVPYINLGEYIIVTGASYNQGGLFYQYLRDNACVASTPDFELTNKLVTSFSKRNLKYYVGNVFSSDAFYAEDEEFVKKWSSRGNIAVEMECATLFTLSKVKGWKSATVLVVSDNLAK--------ELEKSVMDGAKAVLDTLTS 236
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202      |  -     | 222       232    
                                                                                                                                                                                                                                        209      218

Chain E from PDB  Type:PROTEIN  Length:226
 aligned with PNPH_SULSO | P50389 from UniProtKB/Swiss-Prot  Length:236

    Alignment length:234
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232    
           PNPH_SULSO     3 PVHILAKKGEVAERVLVVGDPGRARLLSTLLQNPKLTNENRGFLVYTGKYNGETVSIATHGIGGPSIAIVLEELAMLGANVFIRYGTTGALVPYINLGEYIIVTGASYNQGGLFYQYLRDNACVASTPDFELTNKLVTSFSKRNLKYYVGNVFSSDAFYAEDEEFVKKWSSRGNIAVEMECATLFTLSKVKGWKSATVLVVSDNLAKGGIWITKEELEKSVMDGAKAVLDTLTS 236
               SCOP domains d1jdse_ E: 5'-deoxy-5'-methylthioadenosine phosphorylase                                                                                                                                                                                   SCOP domains
               CATH domains 1jdsE00 E:3-236  [code=3.40.50.1580, no name defined]                                                                                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eeeee.hhhhhhhhhh..eeeeeeehhhhh.eeeeee..eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeee.........eeeeeeee...hhhhhhhhh.........hhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhhh..eeeee.hhhhhhhhhhhhh.eeeeeeeeeee...--------hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------PNP_UDP_1       ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1jds E   3 PVHILAKKGEVAERVLVVGDPGRARLLSTLLQNPKLTNENRGFLVYTGKYNGETVSIATHGIGGPSIAIVLEELAMLGANVFIRYGTTGALVPYINLGEYIIVTGASYNQGGLFYQYLRDNACVASTPDFELTNKLVTSFSKRNLKYYVGNVFSSDAFYAEDEEFVKKWSSRGNIAVEMECATLFTLSKVKGWKSATVLVVSDNLAK--------ELEKSVMDGAKAVLDTLTS 236
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202      |  -     | 222       232    
                                                                                                                                                                                                                                        209      218

Chain F from PDB  Type:PROTEIN  Length:230
 aligned with PNPH_SULSO | P50389 from UniProtKB/Swiss-Prot  Length:236

    Alignment length:234
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232    
           PNPH_SULSO     3 PVHILAKKGEVAERVLVVGDPGRARLLSTLLQNPKLTNENRGFLVYTGKYNGETVSIATHGIGGPSIAIVLEELAMLGANVFIRYGTTGALVPYINLGEYIIVTGASYNQGGLFYQYLRDNACVASTPDFELTNKLVTSFSKRNLKYYVGNVFSSDAFYAEDEEFVKKWSSRGNIAVEMECATLFTLSKVKGWKSATVLVVSDNLAKGGIWITKEELEKSVMDGAKAVLDTLTS 236
               SCOP domains d1jdsf_ F: 5'-deoxy-5'-methylthioadenosine phosphorylase                                                                                                                                                                                   SCOP domains
               CATH domains 1jdsF00 F:3-236  [code=3.40.50.1580, no name defined]                                                                                                                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eeeee.hhhhhhhhhhhheeeeeeehhhhh.eeeeee..eeeeeee...hhhhhhhhhhhhhhh...eeeeeeeeee.........eeeeeeee...hhhhhhhhh.........hhhhhhhhhhhhhhh...eeeeeeee.........hhhhhhhh..eeeee.hhhhhhhhhhhhh.eeeeeeeeeee...----.hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------PNP_UDP_1       ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1jds F   3 PVHILAKKGEVAERVLVVGDPGRARLLSTLLQNPKLTNENRGFLVYTGKYNGETVSIATHGIGGPSIAIVLEELAMLGANVFIRYGTTGALVPYINLGEYIIVTGASYNQGGLFYQYLRDNACVASTPDFELTNKLVTSFSKRNLKYYVGNVFSSDAFYAEDEEFVKKWSSRGNIAVEMECATLFTLSKVKGWKSATVLVVSDNLAK----ITKEELEKSVMDGAKAVLDTLTS 236
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202      |  - |     222       232    
                                                                                                                                                                                                                                        209  214

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Phosphorylase/hydrolase-like (558)

Superfamily: Purine and uridine phosphorylases (283)

Family: Purine and uridine phosphorylases (224)

Protein domain: 5'-deoxy-5'-methylthioadenosine phosphorylase (18)

Sulfolobus solfataricus [TaxId: 2287] (9)

1a	d1jdsa_	A:
1b	d1jdsb_	B:
1c	d1jdsc_	C:
1d	d1jdsd_	D:
1e	d1jdse_	E:
1f	d1jdsf_	F:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.1580, no name defined] (194)

Sulfolobus solfataricus. Organism_taxid: 2287. (9)

1a	1jdsC00	C:3-236
1b	1jdsF00	F:3-236
1c	1jdsA00	A:3-236
1d	1jdsB00	B:3-236
1e	1jdsD00	D:3-236
1f	1jdsE00	E:3-236

(no "Pfam Domain" information available for 1JDS)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D,E,F (PNPH_SULSO | P50389)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0004731	purine-nucleoside phosphorylase activity	Catalysis of the reaction: purine nucleoside + phosphate = purine + alpha-D-ribose 1-phosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016757	transferase activity, transferring glycosyl groups	Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
	GO:0016763	transferase activity, transferring pentosyl groups	Catalysis of the transfer of a pentosyl group from one compound (donor) to another (acceptor).
biological process
	GO:0009116	nucleoside metabolic process	The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine).

Asymmetric/Biological Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		PO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		TRS	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1jds)

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym./Biol. Unit PNG format \| Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	1jds
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	PNPH_SULSO \| P50389
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	2.4.2.28
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	PNPH_SULSO \| P50389
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	PNPH_SULSO \| P50389	:	1jdt 1jdu 1jdv 1jdz 1je0 1je1 1jp7 1jpv

1jds	NATIVE COMPLEX
1jdt	COMPLEXED WITH PHOSPHATE
1jdu	COMPLEXED WITH GUANOSINE AND SULFATE
1jdv	COMPLEXED WITH PHOSPHATE (SPACE GROUP: C2221)
1jdz	COMPLEXED WITH FORMYCIN B AND SULFATE
1je0	COMPLEXED WITH ADENOSINE AND SULFATE
1je1	COMPLEXED WITH MTA AND SULFATE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 12)

Sites (12, 12)

SS Bonds (3, 3)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 6)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 6)

CATH Domains (1, 6)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File