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(-) Description

Title :  CRYSTAL STRUCTURE OF SURE PROTEIN FROM T.MARITIMA IN COMPLEX WITH VANADATE
 
Authors :  S. W. Suh, J. Y. Lee, J. E. Kwak, J. Moon
Date :  28 May 01  (Deposition) - 12 Sep 01  (Release) - 16 Nov 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Vanadate Complex, Sure Protein, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Y. Lee, J. E. Kwak, J. Moon, S. H. Eom, E. C. Liong, J. D. Pedelacq, J. Berendzen, S. W. Suh
Crystal Structure And Functional Analysis Of The Sure Protein Identify A Novel Phosphatase Family.
Nat. Struct. Biol. V. 8 789 2001
PubMed-ID: 11524683  |  Reference-DOI: 10.1038/NSB0901-789
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - STATIONARY PHASE SURVIVAL PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21A
    Expression System Strain: C41(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1CA3Ligand/IonCALCIUM ION
2EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3VO42Ligand/IonVANADATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:8 , ASP A:9 , SER A:39 , ASN A:95 , VO4 A:401 , HOH A:1367BINDING SITE FOR RESIDUE CA A 1301
2AC2SOFTWARETRP A:183 , ASP A:185 , HOH A:1352 , HOH A:1354 , HOH A:1355 , HOH A:1413 , HOH A:1414BINDING SITE FOR RESIDUE CA A 1302
3AC3SOFTWAREASP A:8 , SER A:39 , ALA A:40 , ASN A:95 , ASN A:99 , SER A:107 , GLY A:108 , THR A:109 , CA A:1301BINDING SITE FOR RESIDUE VO4 A 401
4AC4SOFTWAREASP B:8 , ASP B:9 , SER B:39 , ASN B:95 , VO4 B:1401 , HOH B:1402BINDING SITE FOR RESIDUE CA B 1303
5AC5SOFTWAREASP B:8 , SER B:39 , ALA B:40 , ASN B:95 , ASN B:99 , SER B:107 , GLY B:108 , THR B:109 , CA B:1303BINDING SITE FOR RESIDUE VO4 B 1401
6AC6SOFTWAREPRO A:193 , ILE B:45 , ILE B:47 , ASP B:103 , HIS B:106 , TRP B:183 , ASP B:185 , MET B:202 , GLY B:203 , HOH B:1426 , HOH B:1436 , HOH B:1524BINDING SITE FOR RESIDUE EPE B 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1J9L)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:93 -Val A:94
2Gly B:93 -Val B:94

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1J9L)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1J9L)

(-) Exons   (0, 0)

(no "Exon" information available for 1J9L)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:247
 aligned with SURE_THEMA | P96112 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
           SURE_THEMA     1 MRILVTNDDGIQSKGIIVLAELLSEEHEVFVVAPDKERSATGHSITIHVPLWMKKVFISERVVAYSTTGTPADCVKLAYNVVMDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISSANYESPDFEGAARFLIDFLKEFDFSLLDPFTMLNINVPAGEIKGWRFTRQSRRRWNDYFEERVSPFGEKYYWMMGEVIEDDDRDDVDYKAVREGYVSITPIHPFLTNEQCLKKLREVYD 247
               SCOP domains d1j9la_ A: SurE homolog TM1662                                                                                                                                                                                                                          SCOP domains
               CATH domains 1j9lA00 A:1-247  [code=3.40.1210.10, no name defined]                                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee......hhhhhhhhhhhh...eeeeeee..................eeee......eeeee..hhhhhhhhhhhh.......eeeeeeee...hhhhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhhhhhhhh....eeeeee......eeee......eeeeeeeeee.....eeeeeeeeee.......hhhhhhhh.eeeeeee.....hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j9l A   1 MRILVTNDDGIQSKGIIVLAELLSEEHEVFVVAPDKERSATGHSITIHVPLWMKKVFISERVVAYSTTGTPADCVKLAYNVVMDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISSANYESPDFEGAARFLIDFLKEFDFSLLDPFTMLNINVPAGEIKGWRFTRQSRRRWNDYFEERVSPFGEKYYWMMGEVIEDDDRDDVDYKAVREGYVSITPIHPFLTNEQCLKKLREVYD 247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       


Chain B from PDB  Type:PROTEIN  Length:247
 aligned with SURE_THEMA | P96112 from UniProtKB/Swiss-Prot  Length:247

    Alignment length:247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       
           SURE_THEMA     1 MRILVTNDDGIQSKGIIVLAELLSEEHEVFVVAPDKERSATGHSITIHVPLWMKKVFISERVVAYSTTGTPADCVKLAYNVVMDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISSANYESPDFEGAARFLIDFLKEFDFSLLDPFTMLNINVPAGEIKGWRFTRQSRRRWNDYFEERVSPFGEKYYWMMGEVIEDDDRDDVDYKAVREGYVSITPIHPFLTNEQCLKKLREVYD 247
               SCOP domains d1j9lb_ B: SurE homolog TM1662                                                                                                                                                                                                                          SCOP domains
               CATH domains 1j9lB00 B:1-247  [code=3.40.1210.10, no name defined]                                                                                                                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee......hhhhhhhhhhhh...eeeeeee..................eeeeeee..eeeeee..hhhhhhhhhhhhh......eeeeeeee...hhhhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhhhhhhhh....eeeeee......eeee......eeeeeeeeee.....eeeeeeeeee.......hhhhhhhh.eeeeeee.....hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1j9l B   1 MRILVTNDDGIQSKGIIVLAELLSEEHEVFVVAPDKERSATGHSITIHVPLWMKKVFISERVVAYSTTGTPADCVKLAYNVVMDKRVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISSANYESPDFEGAARFLIDFLKEFDFSLLDPFTMLNINVPAGEIKGWRFTRQSRRRWNDYFEERVSPFGEKYYWMMGEVIEDDDRDDVDYKAVREGYVSITPIHPFLTNEQCLKKLREVYD 247
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1J9L)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (SURE_THEMA | P96112)
molecular function
    GO:0008253    5'-nucleotidase activity    Catalysis of the reaction: a 5'-ribonucleotide + H2O = a ribonucleoside + phosphate.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008252    nucleotidase activity    Catalysis of the reaction: a nucleotide + H2O = a nucleoside + phosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0016311    dephosphorylation    The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SURE_THEMA | P96112: 1ilv 1j9j 1j9k

(-) Related Entries Specified in the PDB File

1j9j 1J9J CONTAINS THE SAME PROTEIN(NATIVE FORM)
1j9k 1J9K CONTAINS THE SAME PROTEIN COMPLEXED WITH TUNGSTATE