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(-) Description

Title :  STRUCTURE OF PUTATIVE MINIMAL NUCLEOTIDYLTRANSFERASE
 
Authors :  S. Suzuki, H. Hatanaka, T. Hondoh, A. Okumura, Y. Kuroda, S. Kuramitsu, T. Shibata, Y. Inoue, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  25 Aug 04  (Deposition) - 07 Sep 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Alpha And Beta, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Suzuki, H. Hatanaka, T. Hondoh, A. Okumura, Y. Kuroda, S. Kuramitsu, T. Shibata, Y. Inoue, S. Yokoyama
Structure Of Putative Minimal Nucleotidyltransferase
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PUTATIVE MINIMAL NUCLEOTIDYLTRANSFERASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 274

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1WOT)

(-) Sites  (0, 0)

(no "Site" information available for 1WOT)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WOT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WOT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WOT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1WOT)

(-) Exons   (0, 0)

(no "Exon" information available for 1WOT)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:98
 aligned with P83814_THETH | P83814 from UniProtKB/TrEMBL  Length:95

    Alignment length:98
                               1                                                                                              
                               |     7        17        27        37        47        57        67        77        87        
          P83814_THETH    - ---MDLETLRARREAVLSLCARHGAVRVRVFGSVARGEAREDSDLDLLVAFEEGRTLLDHARLKLALEGLLGVRVDIVSERGLAPRLREQVLREAIPL 95
               SCOP domains d1wota_ A: Unnamed putative nucleotidyltransferase                                                 SCOP domains
               CATH domains 1wotA00 A:-2-95 Beta Polymerase, domain 2                                                          CATH domains
               Pfam domains -----------NTP_transf_2-1wotA01 A:9-95                                                             Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhh..eeee.hhhhhh.......eeeeee.....hhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                  1wot A -2 GSHMDLETLRARREAVLSLCARHGAVRVRVFGSVARGEAREDSDLDLLVAFEEGRTLLDHARLKLALEGLLGVRVDIVSERGLAPRLREQVLREAIPL 95
                                     7        17        27        37        47        57        67        77        87
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: NTP_transf (45)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A   (P83814_THETH | P83814)
molecular function
    GO:0016779    nucleotidyltransferase activity    Catalysis of the transfer of a nucleotidyl group to a reactant.

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  P83814_THETH | P83814
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

1j0l THE COORDINATES IN THIS ENTRY 1WOT ARE ESSENTIALLY THE SAME AS THOSE IN THE ENTRY 1J0L, EXCEPT THAT THE ENSEMBLE OF NMR MODELS IN 1J0L WAS NOT SUPERIMPOSED BY MISTAKE. RELATED ID: TTK003001464.1 RELATED DB: TARGETDB