1HZ6 - JenaLib

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Title :   CRYSTAL STRUCTURES OF THE B1 DOMAIN OF PROTEIN L FROM PEPTOSTREPTOCOCCUS MAGNUS WITH A TYROSINE TO TRYPTOPHAN SUBSTITUTION

Authors :   J. W. O'Neill, D. E. Kim, D. Baker, K. Y. J. Zhang

Date :   23 Jan 01 (Deposition) - 04 Apr 01 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: A,B,C  (1x)
Biol. Unit 5: B,C  (1x)

Keywords :   Four Stranded Beta-Sheet With Central Alpha Helix, Binds Kappa Light Chain Of Immunoglobulins, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. W. O'Neill, D. E. Kim, D. Baker, K. Y. Zhang
Structures Of The B1 Domain Of Protein L From Peptostreptococcus Magnus With A Tyrosine To Tryptophan Substitution.
Acta Crystallogr. , Sect. D V. 57 480 2001
PubMed-ID: 11264576 | Reference-DOI: 10.1107/S0907444901000373

Molecule 1 - PROTEIN L
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET3A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	B1 DOMAIN
	Mutation	:	YES
	Organism Scientific	:	FINEGOLDIA MAGNA
	Organism Taxid	:	334413
	Strain	:	ATCC 29328
	Synonym	:	IG KAPPA LIGHT CHAIN-BINDING PROTEIN

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:	A	B	C
Biological Unit 5 (1x)	:		B	C

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1HZ6)

(no "Site" information available for 1HZ6)

(no "SS Bond" information available for 1HZ6)

(no "Cis Peptide Bond" information available for 1HZ6)

(no "SAP(SNP)/Variant" information available for 1HZ6)

(no "PROSITE Motif" information available for 1HZ6)

(no "Exon" information available for 1HZ6)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:67
 aligned with Q51912_FINMA | Q51912 from UniProtKB/TrEMBL  Length:719

    Alignment length:67
                                   116       126       136       146       156       166       
         Q51912_FINMA   107 TDSEEEVTIKANLIFANGSTQTAEFKGTFEKATSEAYAYADTLKKDNGEYTVDVADKGYTLNIKFAG 173
               SCOP domains d1hz6a_ A: Immunoglobulin light chain-binding domain of protein L   SCOP domains
               CATH domains 1hz6A00 A:-2-64  [code=3.10.20.10, no name defined]                 CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeee.....eeeeeeeehhhhhhhhhhhhhhhhhhhhh.eeeeeehhh.eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                 1hz6 A  -2 HHAMEEVTIKANLIFANGSTQTAEFKGTFEKATSEAYAYADTLKKDNGEWTVDVADKGYTLNIKFAG  64
                                     7        17        27        37        47        57

Chain B from PDB  Type:PROTEIN  Length:63
 aligned with Q51912_FINMA | Q51912 from UniProtKB/TrEMBL  Length:719

    Alignment length:63
                                   120       130       140       150       160       170   
         Q51912_FINMA   111 EEVTIKANLIFANGSTQTAEFKGTFEKATSEAYAYADTLKKDNGEYTVDVADKGYTLNIKFAG 173
               SCOP domains d1hz6b_ B:                                                      SCOP domains
               CATH domains 1hz6B00 B:2-64  [code=3.10.20.10, no name defined]              CATH domains
               Pfam domains --------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee.....eeeeeeeehhhhhhhhhhhhhhhhhhhhh.eeeeeehhh.eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                 1hz6 B   2 EEVTIKANLIFANGSTQTAEFKGTFEKATSEAYAYADTLKKDNGEWTVDVADKGYTLNIKFAG  64
                                    11        21        31        41        51        61

Chain C from PDB  Type:PROTEIN  Length:63
 aligned with Q51912_FINMA | Q51912 from UniProtKB/TrEMBL  Length:719

    Alignment length:63
                                   120       130       140       150       160       170   
         Q51912_FINMA   111 EEVTIKANLIFANGSTQTAEFKGTFEKATSEAYAYADTLKKDNGEYTVDVADKGYTLNIKFAG 173
               SCOP domains d1hz6c_ C:                                                      SCOP domains
               CATH domains 1hz6C00 C:2-64  [code=3.10.20.10, no name defined]              CATH domains
               Pfam domains --------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee.....eeeeeeeehhhhhhhhhhhhhhhhhhhhh.eeeeeehhh.eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------- Transcript
                 1hz6 C   2 EEVTIKANLIFANGSTQTAEFKGTFEKATSEAYAYADTLKKDNGEWTVDVADKGYTLNIKFAG  64
                                    11        21        31        41        51        61

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: beta-Grasp (ubiquitin-like) (1032)

Superfamily: Immunoglobulin-binding domains (65)

Family: Immunoglobulin-binding domains (65)

Protein domain: Immunoglobulin light chain-binding domain of protein L (12)

Peptostreptococcus magnus [TaxId: 1260] (12)

1a	d1hz6a_	A:
1b	d1hz6b_	B:
1c	d1hz6c_	C:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Roll (3276)

Topology: Ubiquitin-like (UB roll) (674)

Homologous Superfamily: [code=3.10.20.10, no name defined] (72)

Finegoldia magna atcc 29328. Organism_taxid: 334413. Strain: atcc 29328. (7)

1a	1hz6B00	B:2-64
1b	1hz6C00	C:2-64
1c	1hz6A00	A:-2-64

(no "Pfam Domain" information available for 1HZ6)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (Q51912_FINMA | Q51912)

molecular function
	GO:0046872		metal ion binding		Interacting selectively and non-covalently with any metal ion.

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	1hz6
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	Q51912_FINMA \| Q51912	:	2ptl
UniProtKB/TrEMBL
	Q51912_FINMA \| Q51912	:	1hz5 1jml 1k50 1k51 1k52 1k53 1kh0 2jzp 2kac

1hz5	1HZ5 IS PROTEIN L B1 DOMAIN (Y47W) WITH ZINC COORDINATED N- TERMINAL 6X HISTIDINE-TAG.
2ptl	NMR DERIVED B1 DOMAIN OF PROTEIN L

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