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(-) Description

Title :  COMPLEX OF THE CATALYTIC PORTION OF HUMAN HMG-COA REDUCTASE WITH FLUVASTATIN
 
Authors :  E. S. Istvan, J. Deisenhofer
Date :  09 Jan 01  (Deposition) - 11 May 01  (Release) - 06 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Protein-Inhibitor Complex, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. S. Istvan, J. Deisenhofer
Structural Mechanism For Statin Inhibition Of Hmg-Coa Reductase.
Science V. 292 1160 2001
PubMed-ID: 11349148  |  Reference-DOI: 10.1126/SCIENCE.1059344

(-) Compounds

Molecule 1 - HMG-COA REDUCTASE
    ChainsA, B, C, D
    EC Number1.1.1.34
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPGEX-CS
    Expression System StrainDH5ALPHA
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentCATALYTIC PORTION
    GeneHMGCR
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    Synonym3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE, HYDROXYMETHYLGLUTARYL-COA REDUCTASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
11154Ligand/Ion(3R,5S,6E)-7-[3-(4-FLUOROPHENYL)-1-(PROPAN-2-YL)-1H-INDOL-2-YL]-3,5-DIHYDROXYHEPT-6-ENOIC ACID
2ADP3Ligand/IonADENOSINE-5'-DIPHOSPHATE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:564 , ASN A:567 , ARG A:568 , LYS A:722 , TYR B:479 , GLU B:528 , ASN B:529BINDING SITE FOR RESIDUE ADP B 101
2AC2SOFTWAREARG B:627 , PHE B:628 , GLY B:652 , ASP B:653 , ALA B:826 , LYS D:619 , ARG D:630 , GLN D:632BINDING SITE FOR RESIDUE ADP B 102
3AC3SOFTWAREPHE D:628 , SER D:651 , GLY D:652 , ASP D:653 , ALA D:654 , GLY D:656 , MET D:657 , ASN D:658 , VAL D:805 , ALA D:826 , HOH D:1172 , HOH D:1207BINDING SITE FOR RESIDUE ADP D 103
4AC4SOFTWAREGLU A:559 , GLY A:560 , CYS A:561 , LEU A:562 , LYS A:735 , ALA A:751 , ASN A:755 , LEU A:853 , HIS A:861 , ARG B:590 , SER B:661 , VAL B:683 , SER B:684 , ASN B:686 , ASP B:690 , LYS B:691 , LYS B:692 , HOH B:1051BINDING SITE FOR RESIDUE 115 B 1
5AC5SOFTWAREARG A:590 , VAL A:683 , SER A:684 , ASN A:686 , ASP A:690 , LYS A:691 , LYS A:692 , HOH A:1022 , GLU B:559 , GLY B:560 , CYS B:561 , LEU B:562 , LYS B:735 , ALA B:751 , ASN B:755 , LEU B:853 , ALA B:856BINDING SITE FOR RESIDUE 115 A 2
6AC6SOFTWAREGLU C:559 , GLY C:560 , CYS C:561 , LEU C:562 , LYS C:735 , ALA C:751 , ASN C:755 , LEU C:853 , HIS C:861 , ARG D:590 , VAL D:683 , SER D:684 , ASN D:686 , ASP D:690 , LYS D:691 , LYS D:692 , HOH D:1087BINDING SITE FOR RESIDUE 115 D 3
7AC7SOFTWAREARG C:590 , VAL C:683 , SER C:684 , ASN C:686 , ASP C:690 , LYS C:691 , LYS C:692 , HOH C:1080 , GLU D:559 , GLY D:560 , CYS D:561 , LEU D:562 , LYS D:735 , ALA D:751 , ASN D:755 , LEU D:853BINDING SITE FOR RESIDUE 115 C 4

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1HWI)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Gly A:542 -Pro A:543
2Cys A:688 -Thr A:689
3Gly B:542 -Pro B:543
4Cys B:688 -Thr B:689
5Gly C:542 -Pro C:543
6Cys C:688 -Thr C:689
7Gly D:542 -Pro D:543
8Cys D:688 -Thr D:689

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 4)

Asymmetric/Biological Unit (1, 4)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_011954I638VHMDH_HUMANPolymorphism5908A/B/C/DI638V

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (4, 14)

Asymmetric/Biological Unit (4, 14)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1HMG_COA_REDUCTASE_4PS50065 Hydroxymethylglutaryl-coenzyme A reductases family profile.HMDH_HUMAN464-871
 
  2A:464-862
B:464-860
2HMG_COA_REDUCTASE_1PS00066 Hydroxymethylglutaryl-coenzyme A reductases signature 1.HMDH_HUMAN646-660
 
 
 
  4A:646-660
B:646-660
C:646-660
D:646-660
3HMG_COA_REDUCTASE_2PS00318 Hydroxymethylglutaryl-coenzyme A reductases signature 2.HMDH_HUMAN802-809
 
 
 
  4A:802-809
B:802-809
C:802-809
D:802-809
4HMG_COA_REDUCTASE_3PS01192 Hydroxymethylglutaryl-coenzyme A reductases signature 3.HMDH_HUMAN856-869
 
 
 
  4A:856-862
B:856-860
C:856-862
D:856-860

(-) Exons   (8, 32)

Asymmetric/Biological Unit (8, 32)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2aENST000002879362aENSE00001378703chr5:74632993-74633125133HMDH_HUMAN-00--
1.5bENST000002879365bENSE00002182886chr5:74638408-74638595188HMDH_HUMAN1-55550--
1.6aENST000002879366aENSE00000753569chr5:74639678-74639789112HMDH_HUMAN56-93380--
1.7bENST000002879367bENSE00000753572chr5:74640070-7464015788HMDH_HUMAN93-122300--
1.8ENST000002879368ENSE00000753575chr5:74641399-7464148385HMDH_HUMAN122-150290--
1.9ENST000002879369ENSE00000753578chr5:74643029-74643134106HMDH_HUMAN151-186360--
1.10bENST0000028793610bENSE00000753581chr5:74645867-74645973107HMDH_HUMAN186-221360--
1.11ENST0000028793611ENSE00000753584chr5:74646083-74646199117HMDH_HUMAN222-260390--
1.12ENST0000028793612ENSE00000753587chr5:74646614-74646774161HMDH_HUMAN261-314540--
1.13aENST0000028793613aENSE00000753589chr5:74646893-74647140248HMDH_HUMAN314-397840--
1.13cENST0000028793613cENSE00000753591chr5:74647249-74647427179HMDH_HUMAN397-456600--
1.14cENST0000028793614cENSE00000753593chr5:74650328-74650522195HMDH_HUMAN457-521654A:462-521 (gaps)
B:462-521
C:489-521
D:487-521
60
60
33
35
1.15bENST0000028793615bENSE00000753595chr5:74650881-74651039159HMDH_HUMAN522-574534A:522-574
B:522-574
C:522-574
D:522-574
53
53
53
53
1.15dENST0000028793615dENSE00000753597chr5:74651190-74651347158HMDH_HUMAN575-627534A:575-627
B:575-627
C:575-627
D:575-627
53
53
53
53
1.16aENST0000028793616aENSE00000753599chr5:74652168-74652273106HMDH_HUMAN627-662364A:627-662
B:627-662
C:627-662
D:627-662
36
36
36
36
1.17bENST0000028793617bENSE00000753601chr5:74654482-74654652171HMDH_HUMAN663-719574A:663-719
B:663-719
C:663-719
D:663-719
57
57
57
57
1.18aENST0000028793618aENSE00000753603chr5:74654995-74655135141HMDH_HUMAN720-766474A:720-766
B:720-766
C:720-766
D:720-766
47
47
47
47
1.19aENST0000028793619aENSE00000753605chr5:74655223-74655381159HMDH_HUMAN767-819534A:767-819
B:767-819
C:767-819
D:767-819
53
53
53
53
1.20bENST0000028793620bENSE00000753607chr5:74655810-74655964155HMDH_HUMAN820-871524A:820-862
B:820-860
C:820-862
D:820-860
43
41
43
41
1.21gENST0000028793621gENSE00001859900chr5:74656113-746579291817HMDH_HUMAN871-888180--

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:393
 aligned with HMDH_HUMAN | P04035 from UniProtKB/Swiss-Prot  Length:888

    Alignment length:401
                                   471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861 
           HMDH_HUMAN   462 LSDAEIIQLVNAKHIPAYKLETLMETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAGHL 862
               SCOP domains d1hwia2 A:4        62-586,A:704-862 Substrate-binding domain of HMG-CoA reductase                                            d1hwia1 A:587-703 NAD-binding domain of HMG-CoA reductase                                                            d1hwia2 A:462-586,A:704-862 Substrate-binding domain of HMG-CoA reductase                                                                                       SCOP domains
               CATH domains 1hwiA01 A:4        62-536 HMGR, N-terminal domain                          1hwiA02 A:537-585,A:704-861                      -1hwiA03 A:587-703  [code=3.30.70.420, no name defined]                                                               1hwiA02 A:537-585,A:704-861 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2                                                                - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh--------......hhhhhhhhhhhhhhhh....hhhhhh.................eeeeeeeeeeeeeeeee..eeeeeeee....hhhhhhhhhhhhhhhh...eeeeeeeeeee..eee..hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeeeee..eeeeeeeee.....hhhhhhhhhhhhhhhhhhhh...eeee...........hhhhhhhh.eeeeeeeeeehhhhhhhh...hhhhhhhhhhhhhhhhhhhh....ee..hhhhhhhhhhhhh..hhhhhhhhh.eeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --HMG_COA_REDUCTASE_4  PDB: A:464-862 UniProt: 464-871                                                                                                                                                                                                                                                                                                                                                            PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_REDUCTA---------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_----------------------------------------------HMG_COA PROSITE (2)
           Transcript 1 (1) Exon 1.14c  PDB: A:462-521 (gaps) UniProt: 457-521          Exon 1.15b  PDB: A:522-574 UniProt: 522-574          Exon 1.15d  PDB: A:575-627 UniProt: 575-627          -----------------------------------Exon 1.17b  PDB: A:663-719 UniProt: 663-719              Exon 1.18a  PDB: A:720-766 UniProt: 720-766    Exon 1.19a  PDB: A:767-819 UniProt: 767-819          Exon 1.20b  PDB: A:820-862 UniProt: 820-871 Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.16a  PDB: A:627-662          -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1hwi A 462 LSDAEIIQLVN--------LETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAGHL 862
                                   471|      481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861 
                                    472      481                                                                                                                                                                                                                                                                                                                                                                                             

Chain B from PDB  Type:PROTEIN  Length:399
 aligned with HMDH_HUMAN | P04035 from UniProtKB/Swiss-Prot  Length:888

    Alignment length:399
                                   471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851         
           HMDH_HUMAN   462 LSDAEIIQLVNAKHIPAYKLETLMETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAG 860
               SCOP domains d1hwib2 B:462-586,B:704-860 Substrate-binding domain of HMG-CoA reductase                                                    d1hwib1 B:587-703 NAD-binding domain of HMG-CoA reductase                                                            d1hwib2 B:462-586,B:704-860 Substrate-binding domain of HMG-CoA reductase                                                                                     SCOP domains
               CATH domains 1hwiB01 B:462-536 HMGR, N-terminal domain                                  1hwiB02 B:537-585,B:704-860                      -1hwiB03 B:587-703  [code=3.30.70.420, no name defined]                                                               1hwiB02 B:537-585,B:704-860 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2                                                                CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh...hhhhh.....hhhhhhhhhhhhhhh.....hhhhhh.................eeeeeeeeeeeeeeeee..eeeeeeee....hhhhhhhhhhhhhhhh...eeeeeeeeeee..eee..hhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeeee..eeeeeeeeee....hhhhhhhhhhhhhhhhhhhh...eeee...........hhhhhhhh.eeeeeeeeeehhhhhhhh...hhhhhhhhhhhhhhhhhhhh....ee..hhhhhhhhhhhhh..hhhhhhhhh.eeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) --HMG_COA_REDUCTASE_4  PDB: B:464-860 UniProt: 464-871                                                                                                                                                                                                                                                                                                                                                          PROSITE (1)
                PROSITE (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_REDUCTA---------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_----------------------------------------------HMG_C PROSITE (2)
           Transcript 1 (1) Exon 1.14c  PDB: B:462-521 UniProt: 457-521 [INCOMPLETE]    Exon 1.15b  PDB: B:522-574 UniProt: 522-574          Exon 1.15d  PDB: B:575-627 UniProt: 575-627          -----------------------------------Exon 1.17b  PDB: B:663-719 UniProt: 663-719              Exon 1.18a  PDB: B:720-766 UniProt: 720-766    Exon 1.19a  PDB: B:767-819 UniProt: 767-819          Exon 1.20b  PDB: B:820-860 [INCOMPLETE]   Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.16a  PDB: B:627-662          ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript 1 (2)
                 1hwi B 462 LSDAEIIQLVNAKHIPAYKLETLIETHERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAG 860
                                   471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661       671       681       691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851         

Chain C from PDB  Type:PROTEIN  Length:374
 aligned with HMDH_HUMAN | P04035 from UniProtKB/Swiss-Prot  Length:888

    Alignment length:374
                                   498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848       858    
           HMDH_HUMAN   489 ERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAGHL 862
               SCOP domains d1hwic2 C:489-586,C:704-862 Substrate-binding domain of HMG-CoA reductase                         d1hwic1 C:587-703 NAD-binding domain of HMG-CoA reductase                                                            d1hwic2 C:489-586,C:704-862 Substrate-binding domain of HMG-CoA reductase                                                                                       SCOP domains
               CATH domains 1hwiC01 C:489-536 HMGR, N-terminal domain       1hwiC02 C:537-585,C:704-862                      -1hwiC03 C:587-703  [code=3.30.70.420, no name defined]                                                               1hwiC02 C:537-585,C:704-862 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2                                                                  CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.....hhhhhh.................eeeeeeeeeeeeeeeee..eeeeeeee....hhhhhhhhhhhhhhhh...eeeeeeeeeee..eee..hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeeeee..eeeeeeeee.....hhhhhhhhhhhhhhhhhhhh...eeee...........hhhhhhhh.eeeeeeeeeehhhhhhhh...hhhhhhhhhhhhhhhhhhhh....ee..hhhhhhhhhhhhh..hhhhhhhhh.eeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------V-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) HMG_COA_REDUCTASE_4  PDB: - UniProt: 464-871                                                                                                                                                                                                                                                                                                                                           PROSITE (1)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_REDUCTA---------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_----------------------------------------------HMG_COA PROSITE (2)
           Transcript 1 (1) Exon 1.14c  PDB: C:489-521       Exon 1.15b  PDB: C:522-574 UniProt: 522-574          Exon 1.15d  PDB: C:575-627 UniProt: 575-627          -----------------------------------Exon 1.17b  PDB: C:663-719 UniProt: 663-719              Exon 1.18a  PDB: C:720-766 UniProt: 720-766    Exon 1.19a  PDB: C:767-819 UniProt: 767-819          Exon 1.20b  PDB: C:820-862 UniProt: 820-871 Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------------------------------------------------------------------------------------Exon 1.16a  PDB: C:627-662          -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript 1 (2)
                 1hwi C 489 ERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAGHL 862
                                   498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848       858    

Chain D from PDB  Type:PROTEIN  Length:374
 aligned with HMDH_HUMAN | P04035 from UniProtKB/Swiss-Prot  Length:888

    Alignment length:374
                                   496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806       816       826       836       846       856    
           HMDH_HUMAN   487 THERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAG 860
               SCOP domains d1hwid2 D:487-586,D:704-860 Substrate-binding domain of HMG-CoA reductase                           d1hwid1 D:587-703 NAD-binding domain of HMG-CoA reductase                                                            d1hwid2 D:487-586,D:704-860 Substrate-binding domain of HMG-CoA reductase                                                                                     SCOP domains
               CATH domains 1hwiD01 D:487-536 HMGR, N-terminal domain         1hwiD02 D:537-585,D:704-860                      -1hwiD03 D:587-703  [code=3.30.70.420, no name defined]                                                               1hwiD02 D:537-585,D:704-860 3-hydroxy-3-methylglutaryl-coenzyme A Reductase; Chain A, domain 2                                                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhh...hhhhhhhh.....hhhhhh......eeeeeeeeeeeeeeeee..eeeeeeee....hhhhhhhhhhhhhhhh...eeeeeeeeeee..eee..hhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeeee..eeeeeeeeee....hhhhhhhhhhhhhhhhhhhh...eeee...........hhhhhhhh.eeeeeeeeeehhhhhhhh...hhhhhhhhhhhhhhhhhhhh....ee..hhhhhhhhhhhhh..hhhhhhhhh.eeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------V------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) HMG_COA_REDUCTASE_4  PDB: - UniProt: 464-871                                                                                                                                                                                                                                                                                                                                           PROSITE (1)
                PROSITE (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_REDUCTA---------------------------------------------------------------------------------------------------------------------------------------------HMG_COA_----------------------------------------------HMG_C PROSITE (2)
           Transcript 1 (1) Exon 1.14c  PDB: D:487-521         Exon 1.15b  PDB: D:522-574 UniProt: 522-574          Exon 1.15d  PDB: D:575-627 UniProt: 575-627          -----------------------------------Exon 1.17b  PDB: D:663-719 UniProt: 663-719              Exon 1.18a  PDB: D:720-766 UniProt: 720-766    Exon 1.19a  PDB: D:767-819 UniProt: 767-819          Exon 1.20b  PDB: D:820-860 [INCOMPLETE]   Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------------------------------------------------------------------------------------------------------Exon 1.16a  PDB: D:627-662          ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript 1 (2)
                 1hwi D 487 THERGVSIRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPIPVGVAGPLCLDEKEFQVPMATTEGCLVASTNRGCRAIGLGGGASSRVLADGMTRGPVVRLPRACDSAEVKAWLETSEGFAVIKEAFDSTSRFARLQKLHTSIAGRNLYIRFQSRSGDAMGMNMISKGTEKALSKLHEYFPEMQILAVSGNYCTDKKPAAINWIEGRGKSVVCEAVIPAKVVREVLKTTTEAMIEVNINKNLVGSAMAGSIGGYNAHAANIVTAIYIACGQDAAQNVGSSNCITLMEASGPTNEDLYISCTMPSIEIGTVGGGTNLLPQQACLQMLGVQGACKDNPGENARQLARIVCGTVMAGELSLMAALAAG 860
                                   496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806       816       826       836       846       856    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric/Biological Unit

(-) CATH Domains  (3, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1HWI)

(-) Gene Ontology  (43, 43)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (HMDH_HUMAN | P04035)
molecular function
    GO:0050661    NADP binding    Interacting selectively and non-covalently with nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; binding may be to either the oxidized form, NADP+, or the reduced form, NADPH.
    GO:0070402    NADPH binding    Interacting selectively and non-covalently with the reduced form, NADPH, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions.
    GO:0050662    coenzyme binding    Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed.
    GO:0004420    hydroxymethylglutaryl-CoA reductase (NADPH) activity    Catalysis of the reaction: (R)-mevalonate + CoA + 2 NADP(+) = (S)-3-hydroxy-3-methylglutaryl-CoA + 2 H(+) + 2 NADPH.
    GO:0042282    hydroxymethylglutaryl-CoA reductase activity    Catalysis of the reaction: (R)-mevalonate + CoA + 2 NAD(+) = (S)-3-hydroxy-3-methylglutaryl-CoA + 2 H(+) + 2 NADH.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016616    oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0051721    protein phosphatase 2A binding    Interacting selectively and non-covalently with the enzyme protein phosphatase 2A.
biological process
    GO:0007568    aging    A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death and may succeed developmental maturation (GO:0021700).
    GO:0006695    cholesterol biosynthetic process    The chemical reactions and pathways resulting in the formation of cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones.
    GO:0008203    cholesterol metabolic process    The chemical reactions and pathways involving cholesterol, cholest-5-en-3 beta-ol, the principal sterol of vertebrates and the precursor of many steroids, including bile acids and steroid hormones. It is a component of the plasma membrane lipid bilayer and of plasma lipoproteins and can be found in all animal tissues.
    GO:0015936    coenzyme A metabolic process    The chemical reactions and pathways involving coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester.
    GO:0008299    isoprenoid biosynthetic process    The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0045445    myoblast differentiation    The process in which a relatively unspecialized cell acquires specialized features of a myoblast. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into striated muscle fibers.
    GO:0043407    negative regulation of MAP kinase activity    Any process that stops, prevents, or reduces the frequency, rate or extent of MAP kinase activity.
    GO:0043066    negative regulation of apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
    GO:0061179    negative regulation of insulin secretion involved in cellular response to glucose stimulus    Any process that decreases the frequency, rate or extent of the regulated release of insulin that contributes to the response of a cell to glucose.
    GO:0010664    negative regulation of striated muscle cell apoptotic process    Any process that decreases the rate or extent of striated muscle cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a striated muscle cell and result in its death.
    GO:0061045    negative regulation of wound healing    Any process that decreases the rate, frequency, or extent of the series of events that restore integrity to a damaged tissue, following an injury.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0070374    positive regulation of ERK1 and ERK2 cascade    Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the ERK1 and ERK2 cascade.
    GO:0010666    positive regulation of cardiac muscle cell apoptotic process    Any process that increases the rate or extent of cardiac cell apoptotic process, a form of programmed cell death induced by external or internal signals that trigger the activity of proteolytic caspases whose actions dismantle a cardiac muscle cell and result in its death.
    GO:0008284    positive regulation of cell proliferation    Any process that activates or increases the rate or extent of cell proliferation.
    GO:0048643    positive regulation of skeletal muscle tissue development    Any process that activates, maintains or increases the rate of skeletal muscle tissue development.
    GO:0048661    positive regulation of smooth muscle cell proliferation    Any process that activates or increases the rate or extent of smooth muscle cell proliferation.
    GO:0032874    positive regulation of stress-activated MAPK cascade    Any process that activates or increases the frequency, rate or extent of signal transduction mediated by the stress-activated MAPK cascade.
    GO:0051262    protein tetramerization    The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits.
    GO:0045471    response to ethanol    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethanol stimulus.
    GO:0007584    response to nutrient    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus.
    GO:0006694    steroid biosynthetic process    The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification.
    GO:0008202    steroid metabolic process    The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.
    GO:0016126    sterol biosynthetic process    The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule.
    GO:0006743    ubiquinone metabolic process    The chemical reactions and pathways involving ubiquinone, a lipid-soluble electron-transporting coenzyme.
    GO:0008542    visual learning    Any process in an organism in which a change in behavior of an individual occurs in response to repeated exposure to a visual cue.
cellular component
    GO:0005783    endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0005789    endoplasmic reticulum membrane    The lipid bilayer surrounding the endoplasmic reticulum.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0043231    intracellular membrane-bounded organelle    Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005778    peroxisomal membrane    The lipid bilayer surrounding a peroxisome.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HMDH_HUMAN | P040351dq8 1dq9 1dqa 1hw8 1hw9 1hwj 1hwk 1hwl 2q1l 2q6b 2q6c 2r4f 3bgl 3cct 3ccw 3ccz 3cd0 3cd5 3cd7 3cda 3cdb

(-) Related Entries Specified in the PDB File

1dq8 CATALYTIC PORTION OF HUMAN HMG-COA REDUCTASE IN COMPLEX WITH HMG AND COA
1dq9 CATALYTIC PORTION OF HUMAN HMG-COA REDUCTASE IN COMPLEX WITH HMG-COA
1dqa CATALYTIC PORTION OF HUMAN HMG-COA REDUCTASE IN COMPLEX WITH HMG, COA, AND NADP+
1hw8 CATALYTIC PORTION OF HUMAN HMG-COA REDUCTASE IN WITH COMPACTIN
1hw9 CATALYTIC PORTION OF HUMAN HMG-COA REDUCTASE IN WITH SIMVASTATIN
1hwj CATALYTIC PORTION OF HUMAN HMG-COA REDUCTASE IN WITH CERIVASTATIN
1hwk CATALYTIC PORTION OF HUMAN HMG-COA REDUCTASE IN WITH ATORVASTATIN
1hwl CATALYTIC PORTION OF HUMAN HMG-COA REDUCTASE IN COMPLEX WITH ROSUVASTATIN