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(-) Description

Title :  SOLUTION STRUCTURE OF THE SH3 DOMAIN OF PHOSPHOLIPASE CGAMMA
 
Authors :  D. Kohda, H. Hatanaka, M. Odaka, F. Inagaki
Date :  13 Jun 94  (Deposition) - 31 Aug 94  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A
Keywords :  Phosphoric Diester Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  D. Kohda, H. Hatanaka, M. Odaka, V. Mandiyan, A. Ullrich, J. Schlessinger, F. Inagaki
Solution Structure Of The Sh3 Domain Of Phospholipase C-Gamma.
Cell(Cambridge, Mass. ) V. 72 953 1993
PubMed-ID: 7681365  |  Reference-DOI: 10.1016/0092-8674(93)90583-C
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PHOSPHOLIPASE C-GAMMA (SH3 DOMAIN)
    ChainsA
    EC Number3.1.4.11
    EngineeredYES
    GeneGRB2
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  
NMR Structure 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1HSQ)

(-) Sites  (0, 0)

(no "Site" information available for 1HSQ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1HSQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1HSQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 1)

NMR Structure (1, 1)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_011908I813TPLCG1_HUMANPolymorphism753381AI26T

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1SH3PS50002 Src homology 3 (SH3) domain profile.PLCG1_HUMAN791-851  1A:4-64

(-) Exons   (4, 4)

NMR Structure (4, 4)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2aENST000003732712aENSE00001459992chr20:39765877-39766498622PLCG1_HUMAN1-73730--
1.3aENST000003732713aENSE00000844722chr20:39788246-39788398153PLCG1_HUMAN73-124520--
1.4ENST000003732714ENSE00000844723chr20:39788510-3978860394PLCG1_HUMAN124-155320--
1.5ENST000003732715ENSE00000844724chr20:39788746-3978879348PLCG1_HUMAN155-171170--
1.6bENST000003732716bENSE00000844725chr20:39791092-3979117685PLCG1_HUMAN171-199290--
1.7ENST000003732717ENSE00000844726chr20:39791282-3979136584PLCG1_HUMAN200-227280--
1.8aENST000003732718aENSE00000844727chr20:39791598-3979163235PLCG1_HUMAN228-239120--
1.8dENST000003732718dENSE00000844728chr20:39791843-3979191573PLCG1_HUMAN239-263250--
1.8eENST000003732718eENSE00000844729chr20:39792018-39792119102PLCG1_HUMAN264-297340--
1.9ENST000003732719ENSE00000844730chr20:39792355-39792473119PLCG1_HUMAN298-337400--
1.10bENST0000037327110bENSE00000844731chr20:39792561-3979264686PLCG1_HUMAN337-366300--
1.11ENST0000037327111ENSE00000844732chr20:39792721-39792841121PLCG1_HUMAN366-406410--
1.12ENST0000037327112ENSE00000844733chr20:39793573-39793741169PLCG1_HUMAN406-462570--
1.13aENST0000037327113aENSE00000844734chr20:39793885-39794007123PLCG1_HUMAN463-503410--
1.14ENST0000037327114ENSE00000844735chr20:39794090-39794191102PLCG1_HUMAN504-537340--
1.15aENST0000037327115aENSE00000844736chr20:39794279-39794466188PLCG1_HUMAN538-600630--
1.16bENST0000037327116bENSE00000844737chr20:39794834-39795034201PLCG1_HUMAN600-667680--
1.17ENST0000037327117ENSE00000844738chr20:39795116-39795235120PLCG1_HUMAN667-707410--
1.18aENST0000037327118aENSE00000844739chr20:39795319-39795499181PLCG1_HUMAN707-767610--
1.19bENST0000037327119bENSE00000844740chr20:39796492-3979656978PLCG1_HUMAN768-793261A:1-6 (gaps)13
1.20bENST0000037327120bENSE00000844741chr20:39797407-39797510104PLCG1_HUMAN794-828351A:7-4135
1.21ENST0000037327121ENSE00000844742chr20:39797719-3979781597PLCG1_HUMAN828-860331A:41-68 (gaps)33
1.22ENST0000037327122ENSE00000844743chr20:39798097-3979816670PLCG1_HUMAN861-884241A:69-713
1.23aENST0000037327123aENSE00000844744chr20:39798752-39798909158PLCG1_HUMAN884-936530--
1.24ENST0000037327124ENSE00000844745chr20:39800833-3980092997PLCG1_HUMAN937-969330--
1.25bENST0000037327125bENSE00000844746chr20:39801061-39801285225PLCG1_HUMAN969-1044760--
1.26ENST0000037327126ENSE00000844747chr20:39801369-39801517149PLCG1_HUMAN1044-1093500--
1.27ENST0000037327127ENSE00000844748chr20:39802060-39802174115PLCG1_HUMAN1094-1132390--
1.28ENST0000037327128ENSE00000844749chr20:39802292-39802453162PLCG1_HUMAN1132-1186550--
1.29ENST0000037327129ENSE00000844750chr20:39802563-3980265189PLCG1_HUMAN1186-1215300--
1.30bENST0000037327130bENSE00001378055chr20:39802767-39802951185PLCG1_HUMAN1216-1277620--
1.31ENST0000037327131ENSE00001459939chr20:39803107-398043611255PLCG1_HUMAN1277-1290140--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:71
 aligned with PLCG1_HUMAN | P19174 from UniProtKB/Swiss-Prot  Length:1290

    Alignment length:83
                                   790       800       810       820       830       840       850       860   
          PLCG1_HUMAN   781 GFYVEANPMPTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVNPVALEPEREHLD 863
               SCOP domains d       1hsqa_ A: Phospholipase C, SH3 domain                                       SCOP domains
               CATH domains 1       hsqA00 A:1-71 SH3 Domains                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .-------.....eeeee.eeee.......eee..eeee.eee....eeeeee..ee.eeeehhheeee..-----....... Sec.struct. author
                 SAPs(SNPs) --------------------------------T-------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------SH3  PDB: A:4-64 UniProt: 791-851                            ------------ PROSITE
           Transcript 1 (1) Exon 1.19b   Exon 1.20b  PDB: A:7-41            --------------------------------1.2 Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------------Exon 1.21  PDB: A:41-68 (gaps)   --- Transcript 1 (2)
                 1hsq A   1 G-------SPTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVN-----PEGIHRD  71
                            |       |3        13        23        33        43        53        63|     | 68   
                            |       2                                                            64    65      
                            1                                                                                  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1HSQ)

(-) Gene Ontology  (42, 42)

NMR Structure(hide GO term definitions)
Chain A   (PLCG1_HUMAN | P19174)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0035254    glutamate receptor binding    Interacting selectively and non-covalently with a glutamate receptor.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005168    neurotrophin TRKA receptor binding    Interacting selectively and non-covalently with the neurotrophin TRKA receptor.
    GO:0004435    phosphatidylinositol phospholipase C activity    Catalysis of the reaction: 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H(2)O = 1,2-diacylglycerol + 1D-myo-inositol 1,4,5-trisphosphate + H(+).
    GO:0004629    phospholipase C activity    Catalysis of the reaction: a phospholipid + H2O = 1,2-diacylglycerol + a phosphatidate.
    GO:0008081    phosphoric diester hydrolase activity    Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0019901    protein kinase binding    Interacting selectively and non-covalently with a protein kinase, any enzyme that catalyzes the transfer of a phosphate group, usually from ATP, to a protein substrate.
    GO:0030971    receptor tyrosine kinase binding    Interacting selectively and non-covalently with a receptor that possesses protein tyrosine kinase activity.
    GO:0004871    signal transducer activity    Conveys a signal across a cell to trigger a change in cell function or state. A signal is a physical entity or change in state that is used to transfer information in order to trigger a response.
    GO:0005057    signal transducer activity, downstream of receptor    Conveys a signal from an upstream receptor or intracellular signal transducer, converting the signal into a form where it can ultimately trigger a change in the state or activity of a cell.
biological process
    GO:0038095    Fc-epsilon receptor signaling pathway    A series of molecular signals initiated by the binding of the Fc portion of immunoglobulin E (IgE) to an Fc-epsilon receptor on the surface of a signal-receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription. The Fc portion of an immunoglobulin is its C-terminal constant region.
    GO:0038096    Fc-gamma receptor signaling pathway involved in phagocytosis    An Fc-gamma receptor signaling pathway that contributes to the endocytic engulfment of external particulate material by phagocytes.
    GO:0050852    T cell receptor signaling pathway    A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell.
    GO:0000186    activation of MAPKK activity    The initiation of the activity of the inactive enzyme MAP kinase kinase (MAPKK).
    GO:0019722    calcium-mediated signaling    Any intracellular signal transduction in which the signal is passed on within the cell via calcium ions.
    GO:0016477    cell migration    The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues. Cell migration is a central process in the development and maintenance of multicellular organisms.
    GO:0071364    cellular response to epidermal growth factor stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an epidermal growth factor stimulus.
    GO:0007173    epidermal growth factor receptor signaling pathway    A series of molecular signals initiated by binding of a ligand to the tyrosine kinase receptor EGFR (ERBB1) on the surface of a cell. The pathway ends with regulation of a downstream cellular process, e.g. transcription.
    GO:0001701    in utero embryonic development    The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth. An example of this process is found in Mus musculus.
    GO:0043647    inositol phosphate metabolic process    The chemical reactions and pathways involving inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with one or more phosphate groups attached.
    GO:0035556    intracellular signal transduction    The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell.
    GO:0050900    leukocyte migration    The movement of a leukocyte within or between different tissues and organs of the body.
    GO:0016042    lipid catabolic process    The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0009395    phospholipid catabolic process    The chemical reactions and pathways resulting in the breakdown of phospholipids, any lipid containing phosphoric acid as a mono- or diester.
    GO:0045766    positive regulation of angiogenesis    Any process that activates or increases angiogenesis.
    GO:0043536    positive regulation of blood vessel endothelial cell migration    Any process that activates or increases the frequency, rate or extent of the migration of the endothelial cells of blood vessels.
    GO:0010634    positive regulation of epithelial cell migration    Any process that activates or increases the frequency, rate or extent of epithelial cell migration.
    GO:0051281    positive regulation of release of sequestered calcium ion into cytosol    Any process that activates or increases the frequency, rate or extent of the release into the cytosolic compartment of calcium ions sequestered in the endoplasmic reticulum or mitochondria.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0008180    COP9 signalosome    A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome.
    GO:0042995    cell projection    A prolongation or process extending from a cell, e.g. a flagellum or axon.
    GO:0005911    cell-cell junction    A cell junction that forms a connection between two or more cells in a multicellular organism; excludes direct cytoplasmic junctions such as ring canals.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0030027    lamellipodium    A thin sheetlike process extended by the leading edge of a migrating cell or extending cell process; contains a dense meshwork of actin filaments.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0001726    ruffle    Projection at the leading edge of a crawling cell; the protrusions are supported by a microfilament meshwork.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PLCG1_HUMAN | P191742hsp 4ey0 4fbn

(-) Related Entries Specified in the PDB File

2hsp