PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1HSQ
Asym. Unit
Info
Asym.Unit (25 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
SOLUTION STRUCTURE OF THE SH3 DOMAIN OF PHOSPHOLIPASE CGAMMA
Authors
:
D. Kohda, H. Hatanaka, M. Odaka, F. Inagaki
Date
:
13 Jun 94 (Deposition) - 31 Aug 94 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A
Keywords
:
Phosphoric Diester Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Kohda, H. Hatanaka, M. Odaka, V. Mandiyan, A. Ullrich, J. Schlessinger, F. Inagaki
Solution Structure Of The Sh3 Domain Of Phospholipase C-Gamma.
Cell(Cambridge, Mass. ) V. 72 953 1993
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_011908 (I26T, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_011908
I
813
T
PLCG1_HUMAN
Polymorphism
753381
A
I
26
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SH3 (A:4-64)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH3
PS50002
Src homology 3 (SH3) domain profile.
PLCG1_HUMAN
791-851
1
A:4-64
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.19b (A:1-6 (gaps))
Exon 1.20b (A:7-41)
Exon 1.21 (A:41-68 (gaps))
Exon 1.22 (A:69-71)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.18a/1.19b
2: Boundary 1.19b/1.20b
3: Boundary 1.20b/1.21
4: Boundary 1.21/1.22
5: Boundary 1.22/1.23a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000373271
2a
ENSE00001459992
chr20:
39765877-39766498
622
PLCG1_HUMAN
1-73
73
0
-
-
1.3a
ENST00000373271
3a
ENSE00000844722
chr20:
39788246-39788398
153
PLCG1_HUMAN
73-124
52
0
-
-
1.4
ENST00000373271
4
ENSE00000844723
chr20:
39788510-39788603
94
PLCG1_HUMAN
124-155
32
0
-
-
1.5
ENST00000373271
5
ENSE00000844724
chr20:
39788746-39788793
48
PLCG1_HUMAN
155-171
17
0
-
-
1.6b
ENST00000373271
6b
ENSE00000844725
chr20:
39791092-39791176
85
PLCG1_HUMAN
171-199
29
0
-
-
1.7
ENST00000373271
7
ENSE00000844726
chr20:
39791282-39791365
84
PLCG1_HUMAN
200-227
28
0
-
-
1.8a
ENST00000373271
8a
ENSE00000844727
chr20:
39791598-39791632
35
PLCG1_HUMAN
228-239
12
0
-
-
1.8d
ENST00000373271
8d
ENSE00000844728
chr20:
39791843-39791915
73
PLCG1_HUMAN
239-263
25
0
-
-
1.8e
ENST00000373271
8e
ENSE00000844729
chr20:
39792018-39792119
102
PLCG1_HUMAN
264-297
34
0
-
-
1.9
ENST00000373271
9
ENSE00000844730
chr20:
39792355-39792473
119
PLCG1_HUMAN
298-337
40
0
-
-
1.10b
ENST00000373271
10b
ENSE00000844731
chr20:
39792561-39792646
86
PLCG1_HUMAN
337-366
30
0
-
-
1.11
ENST00000373271
11
ENSE00000844732
chr20:
39792721-39792841
121
PLCG1_HUMAN
366-406
41
0
-
-
1.12
ENST00000373271
12
ENSE00000844733
chr20:
39793573-39793741
169
PLCG1_HUMAN
406-462
57
0
-
-
1.13a
ENST00000373271
13a
ENSE00000844734
chr20:
39793885-39794007
123
PLCG1_HUMAN
463-503
41
0
-
-
1.14
ENST00000373271
14
ENSE00000844735
chr20:
39794090-39794191
102
PLCG1_HUMAN
504-537
34
0
-
-
1.15a
ENST00000373271
15a
ENSE00000844736
chr20:
39794279-39794466
188
PLCG1_HUMAN
538-600
63
0
-
-
1.16b
ENST00000373271
16b
ENSE00000844737
chr20:
39794834-39795034
201
PLCG1_HUMAN
600-667
68
0
-
-
1.17
ENST00000373271
17
ENSE00000844738
chr20:
39795116-39795235
120
PLCG1_HUMAN
667-707
41
0
-
-
1.18a
ENST00000373271
18a
ENSE00000844739
chr20:
39795319-39795499
181
PLCG1_HUMAN
707-767
61
0
-
-
1.19b
ENST00000373271
19b
ENSE00000844740
chr20:
39796492-39796569
78
PLCG1_HUMAN
768-793
26
1
A:1-6 (gaps)
13
1.20b
ENST00000373271
20b
ENSE00000844741
chr20:
39797407-39797510
104
PLCG1_HUMAN
794-828
35
1
A:7-41
35
1.21
ENST00000373271
21
ENSE00000844742
chr20:
39797719-39797815
97
PLCG1_HUMAN
828-860
33
1
A:41-68 (gaps)
33
1.22
ENST00000373271
22
ENSE00000844743
chr20:
39798097-39798166
70
PLCG1_HUMAN
861-884
24
1
A:69-71
3
1.23a
ENST00000373271
23a
ENSE00000844744
chr20:
39798752-39798909
158
PLCG1_HUMAN
884-936
53
0
-
-
1.24
ENST00000373271
24
ENSE00000844745
chr20:
39800833-39800929
97
PLCG1_HUMAN
937-969
33
0
-
-
1.25b
ENST00000373271
25b
ENSE00000844746
chr20:
39801061-39801285
225
PLCG1_HUMAN
969-1044
76
0
-
-
1.26
ENST00000373271
26
ENSE00000844747
chr20:
39801369-39801517
149
PLCG1_HUMAN
1044-1093
50
0
-
-
1.27
ENST00000373271
27
ENSE00000844748
chr20:
39802060-39802174
115
PLCG1_HUMAN
1094-1132
39
0
-
-
1.28
ENST00000373271
28
ENSE00000844749
chr20:
39802292-39802453
162
PLCG1_HUMAN
1132-1186
55
0
-
-
1.29
ENST00000373271
29
ENSE00000844750
chr20:
39802563-39802651
89
PLCG1_HUMAN
1186-1215
30
0
-
-
1.30b
ENST00000373271
30b
ENSE00001378055
chr20:
39802767-39802951
185
PLCG1_HUMAN
1216-1277
62
0
-
-
1.31
ENST00000373271
31
ENSE00001459939
chr20:
39803107-39804361
1255
PLCG1_HUMAN
1277-1290
14
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1hsqa_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
SH3-domain
(369)
Family
:
SH3-domain
(255)
Protein domain
:
Phospholipase C, SH3 domain
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1hsqa_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1hsqA00 (A:1-71)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
SH3 Domains
(267)
Human (Homo sapiens)
(133)
1a
1hsqA00
A:1-71
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (25 KB)
Header - Asym.Unit
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1HSQ
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
