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(-) Description

Title :  STRUCTURAL FEATURES OF A ZINC-BINDING SITE IN THE SUPERANTIGEN STREPTOCOCCAL PYROGENIC EXOTOXIN A (SPEA1): IMPLICATIONS FOR MHC CLASS II RECOGNITION.
 
Authors :  M. D. Baker, D. M. Gutman, A. C. Papageorgiou, C. M. Collins, K. R. Acharya
Date :  28 Mar 01  (Deposition) - 03 Apr 02  (Release) - 14 Apr 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.82
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Toxin, Molecular Recognition, Superantigen, Exotoxin, Zinc Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. D. Baker, D. M. Gutman, A. C. Papageorgiou, C. M. Collins, K. R. Acharya
Structural Features Of A Zinc Binding Site In The Superantigen Strepococcal Pyrogenic Exotoxin A (Spea1): Implications For Mhc Class Ii Recognition.
Protein Sci. V. 10 1268 2001
PubMed-ID: 11369867  |  Reference-DOI: 10.1110/PS.330101

(-) Compounds

Molecule 1 - STREPTOCOCCAL PYOGENIC EXOTOXIN A1
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Fragment: RESIDUES 33-250
    Organism Scientific: STREPTOCOCCUS PYOGENES
    Organism Taxid: 1314

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1ZN4Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:1033 , ASP A:1077 , HIS A:1106 , HIS A:1110BINDING SITE FOR RESIDUE ZN A2221
2AC2SOFTWAREGLU B:2033 , ASP B:2077 , HIS B:2106 , HIS B:2110BINDING SITE FOR RESIDUE ZN B3221
3AC3SOFTWAREGLU C:3033 , ASP C:3077 , HIS C:3106 , HIS C:3110BINDING SITE FOR RESIDUE ZN C4221
4AC4SOFTWAREGLU D:4033 , ASP D:4077 , HIS D:4106 , HIS D:4110BINDING SITE FOR RESIDUE ZN D5221

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1B:2087 -B:2098
2C:3087 -C:3098
3D:4087 -D:4098

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1HA5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1HA5)

(-) PROSITE Motifs  (2, 8)

Asymmetric Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1STAPH_STREP_TOXIN_1PS00277 Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin signature 1.SPEA_BPT12130-139
 
 
 		  4A:1100-1109
B:2100-2109
C:3100-3109
D:4100-4109
SPEA_STRP8130-139
 
 
 		  4A:1100-1109
B:2100-2109
C:3100-3109
D:4100-4109
SPEA_STRPY130-139
 
 
 		  4A:1100-1109
B:2100-2109
C:3100-3109
D:4100-4109
2STAPH_STREP_TOXIN_2PS00278 Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.SPEA_BPT12167-190
 
 
 		  4A:1137-1160
B:2137-2160
C:3137-3160
D:4137-4160
SPEA_STRP8167-190
 
 
 		  4A:1137-1160
B:2137-2160
C:3137-3160
D:4137-4160
Biological Unit 1 (2, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1STAPH_STREP_TOXIN_1PS00277 Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin signature 1.SPEA_BPT12130-139
 
 
 		  1A:1100-1109
-
-
-
SPEA_STRP8130-139
 
 
 		  1A:1100-1109
-
-
-
SPEA_STRPY130-139
 
 
 		  1A:1100-1109
-
-
-
2STAPH_STREP_TOXIN_2PS00278 Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.SPEA_BPT12167-190
 
 
 		  1A:1137-1160
-
-
-
SPEA_STRP8167-190
 
 
 		  1A:1137-1160
-
-
-
Biological Unit 2 (2, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1STAPH_STREP_TOXIN_1PS00277 Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin signature 1.SPEA_BPT12130-139
 
 
 		  1-
B:2100-2109
-
-
SPEA_STRP8130-139
 
 
 		  1-
B:2100-2109
-
-
SPEA_STRPY130-139
 
 
 		  1-
B:2100-2109
-
-
2STAPH_STREP_TOXIN_2PS00278 Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.SPEA_BPT12167-190
 
 
 		  1-
B:2137-2160
-
-
SPEA_STRP8167-190
 
 
 		  1-
B:2137-2160
-
-
Biological Unit 3 (2, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1STAPH_STREP_TOXIN_1PS00277 Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin signature 1.SPEA_BPT12130-139
 
 
 		  1-
-
C:3100-3109
-
SPEA_STRP8130-139
 
 
 		  1-
-
C:3100-3109
-
SPEA_STRPY130-139
 
 
 		  1-
-
C:3100-3109
-
2STAPH_STREP_TOXIN_2PS00278 Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.SPEA_BPT12167-190
 
 
 		  1-
-
C:3137-3160
-
SPEA_STRP8167-190
 
 
 		  1-
-
C:3137-3160
-
Biological Unit 4 (2, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1STAPH_STREP_TOXIN_1PS00277 Staphylococcal enterotoxin/Streptococcal pyrogenic exotoxin signature 1.SPEA_BPT12130-139
 
 
 		  1-
-
-
D:4100-4109
SPEA_STRP8130-139
 
 
 		  1-
-
-
D:4100-4109
SPEA_STRPY130-139
 
 
 		  1-
-
-
D:4100-4109
2STAPH_STREP_TOXIN_2PS00278 Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.SPEA_BPT12167-190
 
 
 		  1-
-
-
D:4137-4160
SPEA_STRP8167-190
 
 
 		  1-
-
-
D:4137-4160

(-) Exons   (0, 0)

(no "Exon" information available for 1HA5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:218
 aligned with SPEA_BPT12 | P0DJY8 from UniProtKB/Swiss-Prot  Length:251

    Alignment length:218
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242        
          SPEA_BPT12     33 DPDPSQLHRSSLVKNLQNIYFLYEGDPVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACIYGGVTNHEGNHLEIPKKIVVKVSIDGIQSLSFDIETNKKMVTAQELDYKVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT  250
               SCOP domains d1ha5a1 A:1003-1107 Streptococcal pyrogenic exotoxin A1                                                  d1ha5a2 A:1108-1220 Streptococcal pyrogenic exotoxin A1                                                           SCOP domains
               CATH domains 1ha5A01                    1ha5A02 A:1030-1108  [code=2.40.50.110, no name defined]                       1ha5A01 A:1003-1029,A:1109-1220  [code=3.10.20.120, no name defined]                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh..hhhhhhhhhh..eeeeeee........eeee........eeeee..hhhhhhh....eeeeee...............eeeee..eee....eeeeeeeeeeeeee..eeeeeeeeeeee.eeehhhhhhhhhhhhhhhhh..........eeeeeee......eeee.......hhhhhhhhhh...eee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------STAPH_STRE---------------------------STAPH_STREP_TOXIN_2     ------------------------------------------------------------ PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ha5 A 1003 DPDPSQLHRSSLVKNLQNIYFLYEGDPVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACIYGGVTNHAGNHLEIPKKIVVKVSIDGIQSLSFDIETNKKMVTAQELDYKVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT 1220
                                  1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212        


Chain A from PDB  Type:PROTEIN  Length:218
 aligned with SPEA_STRP8 | P62561 from UniProtKB/Swiss-Prot  Length:251

    Alignment length:218
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242        
          SPEA_STRP8     33 DPDPSQLHRSSLVKNLQNIYFLYEGDPVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACIYGGVTNHEGNHLEIPKKIVVKVSIDGIQSLSFDIETNKKMVTAQELDYKVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT  250
               SCOP domains d1ha5a1 A:1003-1107 Streptococcal pyrogenic exotoxin A1                                                  d1ha5a2 A:1108-1220 Streptococcal pyrogenic exotoxin A1                                                           SCOP domains
               CATH domains 1ha5A01                    1ha5A02 A:1030-1108  [code=2.40.50.110, no name defined]                       1ha5A01 A:1003-1029,A:1109-1220  [code=3.10.20.120, no name defined]                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh..hhhhhhhhhh..eeeeeee........eeee........eeeee..hhhhhhh....eeeeee...............eeeee..eee....eeeeeeeeeeeeee..eeeeeeeeeeee.eeehhhhhhhhhhhhhhhhh..........eeeeeee......eeee.......hhhhhhhhhh...eee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------STAPH_STRE--------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (1) --------------------------------------------------------------------------------------------------------------------------------------STAPH_STREP_TOXIN_2     ------------------------------------------------------------ PROSITE (1)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ha5 A 1003 DPDPSQLHRSSLVKNLQNIYFLYEGDPVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACIYGGVTNHAGNHLEIPKKIVVKVSIDGIQSLSFDIETNKKMVTAQELDYKVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT 1220
                                  1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212        


Chain A from PDB  Type:PROTEIN  Length:218
 aligned with SPEA_STRPY | P0DJY7 from UniProtKB/Swiss-Prot  Length:250

    Alignment length:218
                                                                                                                                                                    170                                                                               
                                                                                                                                                                  169 |                                                                               
                                    42        52        62        72        82        92       102       112       122       132       142       152       162      |171       181       191       201       211       221       231       241        
          SPEA_STRPY     33 RPKPSQLQRSNLVKTFKIYIFFMRVTLVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACLYGGVTNHEGNHLEIPKKIVVKVSIDGIQSLSFDIEQIKNG-NCSRISYTVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT  249
               SCOP domains d1ha5a1 A:1003-1107 Streptococcal pyrogenic exotoxin A1                                                  d1ha5a2 A:1108-1220 Streptococcal pyrogenic exotoxin A1                                                           SCOP domains
               CATH domains 1ha5A01                    1ha5A02 A:1030-1108  [code=2.40.50.110, no name defined]                       1ha5A01 A:1003-1029,A:1109-1220  [code=3.10.20.120, no name defined]                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh..hhhhhhhhhh..eeeeeee........eeee........eeeee..hhhhhhh....eeeeee...............eeeee..eee....eeeeeeeeeeeeee..eeeeeeeeeeee.eeehhhhhhhhhhhhhhhhh..........eeeeeee......eeee.......hhhhhhhhhh...eee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------STAPH_STRE--------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ha5 A 1003 DPDPSQLHRSSLVKNLQNIYFLYEGDPVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACIYGGVTNHAGNHLEIPKKIVVKVSIDGIQSLSFDIETNKKMVTAQELDYKVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT 1220
                                  1012      1022      1032      1042      1052      1062      1072      1082      1092      1102      1112      1122      1132      1142      1152      1162      1172      1182      1192      1202      1212        


Chain B from PDB  Type:PROTEIN  Length:218
 aligned with SPEA_BPT12 | P0DJY8 from UniProtKB/Swiss-Prot  Length:251

    Alignment length:218
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242        
          SPEA_BPT12     33 DPDPSQLHRSSLVKNLQNIYFLYEGDPVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACIYGGVTNHEGNHLEIPKKIVVKVSIDGIQSLSFDIETNKKMVTAQELDYKVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT  250
               SCOP domains d1ha5b1 B:2003-2107 Streptococcal pyrogenic exotoxin A1                                                  d1ha5b2 B:2108-2220 Streptococcal pyrogenic exotoxin A1                                                           SCOP domains
               CATH domains 1ha5B01                    1ha5B02 B:2030-2108  [code=2.40.50.110, no name defined]                       1ha5B01 B:2003-2029,B:2109-2220  [code=3.10.20.120, no name defined]                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh.hhhhh...hhhhhhhhh..eeeeee.........eeee........eeeee..hhhhhhhh....eeeee...............eeeee..eee.........eeeeeeeee..eeeeeeeeee...eeehhhhhhhhhhhhhhhhh..........eeeeeee......eeee.......hhhhhhhhhh...eee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------STAPH_STRE---------------------------STAPH_STREP_TOXIN_2     ------------------------------------------------------------ PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ha5 B 2003 DPDPSQLHRSSLVKNLQNIYFLYEGDPVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACIYGGVTNHAGNHLEIPKKIVVKVSIDGIQSLSFDIETNKKMVTAQELDYKVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT 2220
                                  2012      2022      2032      2042      2052      2062      2072      2082      2092      2102      2112      2122      2132      2142      2152      2162      2172      2182      2192      2202      2212        


Chain B from PDB  Type:PROTEIN  Length:218
 aligned with SPEA_STRP8 | P62561 from UniProtKB/Swiss-Prot  Length:251

    Alignment length:218
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242        
          SPEA_STRP8     33 DPDPSQLHRSSLVKNLQNIYFLYEGDPVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACIYGGVTNHEGNHLEIPKKIVVKVSIDGIQSLSFDIETNKKMVTAQELDYKVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT  250
               SCOP domains d1ha5b1 B:2003-2107 Streptococcal pyrogenic exotoxin A1                                                  d1ha5b2 B:2108-2220 Streptococcal pyrogenic exotoxin A1                                                           SCOP domains
               CATH domains 1ha5B01                    1ha5B02 B:2030-2108  [code=2.40.50.110, no name defined]                       1ha5B01 B:2003-2029,B:2109-2220  [code=3.10.20.120, no name defined]                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh.hhhhh...hhhhhhhhh..eeeeee.........eeee........eeeee..hhhhhhhh....eeeee...............eeeee..eee.........eeeeeeeee..eeeeeeeeee...eeehhhhhhhhhhhhhhhhh..........eeeeeee......eeee.......hhhhhhhhhh...eee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------STAPH_STRE--------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (1) --------------------------------------------------------------------------------------------------------------------------------------STAPH_STREP_TOXIN_2     ------------------------------------------------------------ PROSITE (1)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ha5 B 2003 DPDPSQLHRSSLVKNLQNIYFLYEGDPVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACIYGGVTNHAGNHLEIPKKIVVKVSIDGIQSLSFDIETNKKMVTAQELDYKVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT 2220
                                  2012      2022      2032      2042      2052      2062      2072      2082      2092      2102      2112      2122      2132      2142      2152      2162      2172      2182      2192      2202      2212        


Chain B from PDB  Type:PROTEIN  Length:218
 aligned with SPEA_STRPY | P0DJY7 from UniProtKB/Swiss-Prot  Length:250

    Alignment length:218
                                                                                                                                                                    170                                                                               
                                                                                                                                                                  169 |                                                                               
                                    42        52        62        72        82        92       102       112       122       132       142       152       162      |171       181       191       201       211       221       231       241        
          SPEA_STRPY     33 RPKPSQLQRSNLVKTFKIYIFFMRVTLVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACLYGGVTNHEGNHLEIPKKIVVKVSIDGIQSLSFDIEQIKNG-NCSRISYTVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT  249
               SCOP domains d1ha5b1 B:2003-2107 Streptococcal pyrogenic exotoxin A1                                                  d1ha5b2 B:2108-2220 Streptococcal pyrogenic exotoxin A1                                                           SCOP domains
               CATH domains 1ha5B01                    1ha5B02 B:2030-2108  [code=2.40.50.110, no name defined]                       1ha5B01 B:2003-2029,B:2109-2220  [code=3.10.20.120, no name defined]                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh.hhhhh...hhhhhhhhh..eeeeee.........eeee........eeeee..hhhhhhhh....eeeee...............eeeee..eee.........eeeeeeeee..eeeeeeeeee...eeehhhhhhhhhhhhhhhhh..........eeeeeee......eeee.......hhhhhhhhhh...eee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------STAPH_STRE--------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ha5 B 2003 DPDPSQLHRSSLVKNLQNIYFLYEGDPVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACIYGGVTNHAGNHLEIPKKIVVKVSIDGIQSLSFDIETNKKMVTAQELDYKVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT 2220
                                  2012      2022      2032      2042      2052      2062      2072      2082      2092      2102      2112      2122      2132      2142      2152      2162      2172      2182      2192      2202      2212        


Chain C from PDB  Type:PROTEIN  Length:218
 aligned with SPEA_BPT12 | P0DJY8 from UniProtKB/Swiss-Prot  Length:251

    Alignment length:218
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242        
          SPEA_BPT12     33 DPDPSQLHRSSLVKNLQNIYFLYEGDPVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACIYGGVTNHEGNHLEIPKKIVVKVSIDGIQSLSFDIETNKKMVTAQELDYKVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT  250
               SCOP domains d1ha5c1 C:3003-3107 Streptococcal pyrogenic exotoxin A1                                                  d1ha5c2 C:3108-3220 Streptococcal pyrogenic exotoxin A1                                                           SCOP domains
               CATH domains 1ha5C01                    1ha5C02 C:3030-3108  [code=2.40.50.110, no name defined]                       1ha5C01 C:3003-3029,C:3109-3220  [code=3.10.20.120, no name defined]                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh..hhhhhhhhhh..eeeeeee........eeee........eeeee..hhhhhhhhhh.eeeeee...............eeeee..eee....eeeeeeeeeeeeee..eeeeeeeeeeee.eeehhhhhhhhhhhhhhhhh..........eeeeee.......eeee.......hhhhhhhhhh...eee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------STAPH_STRE---------------------------STAPH_STREP_TOXIN_2     ------------------------------------------------------------ PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ha5 C 3003 DPDPSQLHRSSLVKNLQNIYFLYEGDPVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACIYGGVTNHAGNHLEIPKKIVVKVSIDGIQSLSFDIETNKKMVTAQELDYKVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT 3220
                                  3012      3022      3032      3042      3052      3062      3072      3082      3092      3102      3112      3122      3132      3142      3152      3162      3172      3182      3192      3202      3212        


Chain C from PDB  Type:PROTEIN  Length:218
 aligned with SPEA_STRP8 | P62561 from UniProtKB/Swiss-Prot  Length:251

    Alignment length:218
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242        
          SPEA_STRP8     33 DPDPSQLHRSSLVKNLQNIYFLYEGDPVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACIYGGVTNHEGNHLEIPKKIVVKVSIDGIQSLSFDIETNKKMVTAQELDYKVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT  250
               SCOP domains d1ha5c1 C:3003-3107 Streptococcal pyrogenic exotoxin A1                                                  d1ha5c2 C:3108-3220 Streptococcal pyrogenic exotoxin A1                                                           SCOP domains
               CATH domains 1ha5C01                    1ha5C02 C:3030-3108  [code=2.40.50.110, no name defined]                       1ha5C01 C:3003-3029,C:3109-3220  [code=3.10.20.120, no name defined]                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh..hhhhhhhhhh..eeeeeee........eeee........eeeee..hhhhhhhhhh.eeeeee...............eeeee..eee....eeeeeeeeeeeeee..eeeeeeeeeeee.eeehhhhhhhhhhhhhhhhh..........eeeeee.......eeee.......hhhhhhhhhh...eee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------STAPH_STRE--------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (1) --------------------------------------------------------------------------------------------------------------------------------------STAPH_STREP_TOXIN_2     ------------------------------------------------------------ PROSITE (1)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ha5 C 3003 DPDPSQLHRSSLVKNLQNIYFLYEGDPVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACIYGGVTNHAGNHLEIPKKIVVKVSIDGIQSLSFDIETNKKMVTAQELDYKVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT 3220
                                  3012      3022      3032      3042      3052      3062      3072      3082      3092      3102      3112      3122      3132      3142      3152      3162      3172      3182      3192      3202      3212        


Chain C from PDB  Type:PROTEIN  Length:218
 aligned with SPEA_STRPY | P0DJY7 from UniProtKB/Swiss-Prot  Length:250

    Alignment length:218
                                                                                                                                                                    170                                                                               
                                                                                                                                                                  169 |                                                                               
                                    42        52        62        72        82        92       102       112       122       132       142       152       162      |171       181       191       201       211       221       231       241        
          SPEA_STRPY     33 RPKPSQLQRSNLVKTFKIYIFFMRVTLVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACLYGGVTNHEGNHLEIPKKIVVKVSIDGIQSLSFDIEQIKNG-NCSRISYTVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT  249
               SCOP domains d1ha5c1 C:3003-3107 Streptococcal pyrogenic exotoxin A1                                                  d1ha5c2 C:3108-3220 Streptococcal pyrogenic exotoxin A1                                                           SCOP domains
               CATH domains 1ha5C01                    1ha5C02 C:3030-3108  [code=2.40.50.110, no name defined]                       1ha5C01 C:3003-3029,C:3109-3220  [code=3.10.20.120, no name defined]                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh..hhhhhhhhhh..eeeeeee........eeee........eeeee..hhhhhhhhhh.eeeeee...............eeeee..eee....eeeeeeeeeeeeee..eeeeeeeeeeee.eeehhhhhhhhhhhhhhhhh..........eeeeee.......eeee.......hhhhhhhhhh...eee.....eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------STAPH_STRE--------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ha5 C 3003 DPDPSQLHRSSLVKNLQNIYFLYEGDPVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACIYGGVTNHAGNHLEIPKKIVVKVSIDGIQSLSFDIETNKKMVTAQELDYKVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT 3220
                                  3012      3022      3032      3042      3052      3062      3072      3082      3092      3102      3112      3122      3132      3142      3152      3162      3172      3182      3192      3202      3212        


Chain D from PDB  Type:PROTEIN  Length:218
 aligned with SPEA_BPT12 | P0DJY8 from UniProtKB/Swiss-Prot  Length:251

    Alignment length:218
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242        
          SPEA_BPT12     33 DPDPSQLHRSSLVKNLQNIYFLYEGDPVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACIYGGVTNHEGNHLEIPKKIVVKVSIDGIQSLSFDIETNKKMVTAQELDYKVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT  250
               SCOP domains d1ha5d1 D:4003-4107 Streptococcal pyrogenic exotoxin A1                                                  d1ha5d2 D:4108-4220 Streptococcal pyrogenic exotoxin A1                                                           SCOP domains
               CATH domains 1ha5D01                    1ha5D02 D:4030-4108  [code=2.40.50.110, no name defined]                       1ha5D01 D:4003-4029,D:4109-4220  [code=3.10.20.120, no name defined]                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh..hhhhhhhhhh..eeeeeee........eeee........eeeee..hhhhhhh....eeeeee...............eeeee..eee....eeeeeeeeeee.........eeeeeeee.eeehhhhhhhhhhhhhhhh............eeeeee......eeee.......hhhhhhhhhh...eee....eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------STAPH_STRE---------------------------STAPH_STREP_TOXIN_2     ------------------------------------------------------------ PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ha5 D 4003 DPDPSQLHRSSLVKNLQNIYFLYEGDPVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACIYGGVTNHAGNHLEIPKKIVVKVSIDGIQSLSFDIETNKKMVTAQELDYKVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT 4220
                                  4012      4022      4032      4042      4052      4062      4072      4082      4092      4102      4112      4122      4132      4142      4152      4162      4172      4182      4192      4202      4212        


Chain D from PDB  Type:PROTEIN  Length:218
 aligned with SPEA_STRP8 | P62561 from UniProtKB/Swiss-Prot  Length:251

    Alignment length:218
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242        
          SPEA_STRP8     33 DPDPSQLHRSSLVKNLQNIYFLYEGDPVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACIYGGVTNHEGNHLEIPKKIVVKVSIDGIQSLSFDIETNKKMVTAQELDYKVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT  250
               SCOP domains d1ha5d1 D:4003-4107 Streptococcal pyrogenic exotoxin A1                                                  d1ha5d2 D:4108-4220 Streptococcal pyrogenic exotoxin A1                                                           SCOP domains
               CATH domains 1ha5D01                    1ha5D02 D:4030-4108  [code=2.40.50.110, no name defined]                       1ha5D01 D:4003-4029,D:4109-4220  [code=3.10.20.120, no name defined]                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh..hhhhhhhhhh..eeeeeee........eeee........eeeee..hhhhhhh....eeeeee...............eeeee..eee....eeeeeeeeeee.........eeeeeeee.eeehhhhhhhhhhhhhhhh............eeeeee......eeee.......hhhhhhhhhh...eee....eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                PROSITE (3) -------------------------------------------------------------------------------------------------STAPH_STRE--------------------------------------------------------------------------------------------------------------- PROSITE (3)
                PROSITE (1) --------------------------------------------------------------------------------------------------------------------------------------STAPH_STREP_TOXIN_2     ------------------------------------------------------------ PROSITE (1)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ha5 D 4003 DPDPSQLHRSSLVKNLQNIYFLYEGDPVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACIYGGVTNHAGNHLEIPKKIVVKVSIDGIQSLSFDIETNKKMVTAQELDYKVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT 4220
                                  4012      4022      4032      4042      4052      4062      4072      4082      4092      4102      4112      4122      4132      4142      4152      4162      4172      4182      4192      4202      4212        


Chain D from PDB  Type:PROTEIN  Length:218
 aligned with SPEA_STRPY | P0DJY7 from UniProtKB/Swiss-Prot  Length:250

    Alignment length:218
                                                                                                                                                                    170                                                                               
                                                                                                                                                                  169 |                                                                               
                                    42        52        62        72        82        92       102       112       122       132       142       152       162      |171       181       191       201       211       221       231       241        
          SPEA_STRPY     33 RPKPSQLQRSNLVKTFKIYIFFMRVTLVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACLYGGVTNHEGNHLEIPKKIVVKVSIDGIQSLSFDIEQIKNG-NCSRISYTVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT  249
               SCOP domains d1ha5d1 D:4003-4107 Streptococcal pyrogenic exotoxin A1                                                  d1ha5d2 D:4108-4220 Streptococcal pyrogenic exotoxin A1                                                           SCOP domains
               CATH domains 1ha5D01                    1ha5D02 D:4030-4108  [code=2.40.50.110, no name defined]                       1ha5D01 D:4003-4029,D:4109-4220  [code=3.10.20.120, no name defined]                                             CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh..hhhhhhhhhh..eeeeeee........eeee........eeeee..hhhhhhh....eeeeee...............eeeee..eee....eeeeeeeeeee.........eeeeeeee.eeehhhhhhhhhhhhhhhh............eeeeee......eeee.......hhhhhhhhhh...eee....eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------STAPH_STRE--------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1ha5 D 4003 DPDPSQLHRSSLVKNLQNIYFLYEGDPVTHENVKSVDQLLSHDLIYNVSGPNYDKLKTELKNQEMATLFKDKNVDIYGVEYYHLCYLCENAERSACIYGGVTNHAGNHLEIPKKIVVKVSIDGIQSLSFDIETNKKMVTAQELDYKVRKYLTDNKQLYTNGPSKYETGYIKFIPKNKESFWFDFFPEPEFTQSKYLMIYKDNETLDSNTSQIEVYLTT 4220
                                  4012      4022      4032      4042      4052      4062      4072      4082      4092      4102      4112      4122      4132      4142      4152      4162      4172      4182      4192      4202      4212
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 8)

Asymmetric Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (2, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: Roll (3276)
(-)
Topology: Ubiquitin-like (UB roll) (674)
(-)
Homologous Superfamily: [code=3.10.20.120, no name defined] (91)
(-)
Streptococcus pyogenes. Organism_taxid: 1314. (7)
1a1ha5A01A:1003-1029,A:1109-1220
1b1ha5B01B:2003-2029,B:2109-2220
1c1ha5C01C:3003-3029,C:3109-3220
1d1ha5D01D:4003-4029,D:4109-4220
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1HA5)

(-) Gene Ontology  (2, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (SPEA_STRPY | P0DJY7)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Chain A,B,C,D   (SPEA_BPT12 | P0DJY8)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

Chain A,B,C,D   (SPEA_STRP8 | P62561)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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  1ha5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SPEA_BPT12 | P0DJY8: 1b1z 1fnu 1fnv 1fnw 1l0x 1l0y 1uup
        SPEA_STRP8 | P62561: 1l0x 1l0y 1uup
        SPEA_STRPY | P0DJY7: 1b1z 1fnu 1fnv 1fnw 1l0x 1l0y 1uup

(-) Related Entries Specified in the PDB File

1b1z STREPTOCOCCAL PYROGENIC EXOTOXIN A1
1fnu STRUCTURE OF STREPTOCOCCAL PYROGENIC EXOTOXIN A
1fnv STRUCTURE OF STREPTOCOCCAL PYROGENIC EXOTOXIN A
1fnw CRYSTAL STRUCTURE OF STREPTOCOCCAL PYROGENIC EXOTOXIN A