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(-) Description

Title :  THREE-DIMENSIONAL STRUCTURE OF ANTI-AMPICILLIN SINGLE CHAIN FV FRAGMENT FROM PHAGE-DISPLAYED MURINE ANTIBODY LIBRARIES
 
Authors :  S. Jung, S. Spinelli, B. Schimmele, A. Honegger, L. Pugliese, C. Cambillau, A. Pluckthun
Date :  14 Feb 01  (Deposition) - 02 Aug 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.87
Chains :  Asym./Biol. Unit :  A
Keywords :  Antibody, Framework (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Jung, S. Spinelli, B. Schimmele, A. Honegger, L. Pugliese, C. Cambillau, A. Pluckthun
The Importance Of Framework Residues H6, H7 And H10 In Antibody Heavy Chains: Experimental Evidence For A New Structural Subclassification Of Antibody V(H) Domains
J. Mol. Biol. V. 309 701 2001
PubMed-ID: 11397090  |  Reference-DOI: 10.1006/JMBI.2001.4665

(-) Compounds

Molecule 1 - MUTANT AL2 6E7S9G
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: FV FRAGMENT
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: SINGLE CHAIN FV ANTIBODY IN WHICH THE VL AND VH FRAGMENTS ARE JOINED BY A GGGGSGGGGSGGGGSGGGGS LINKER

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2SO41Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:21 , SER A:23 , SER A:156 , GLY A:157 , HOH A:2103BINDING SITE FOR RESIDUE SO4 A1002
2AC2SOFTWARESER A:79 , TYR A:158 , THR A:159 , SER A:162 , TYR A:163BINDING SITE FOR RESIDUE GOL A1000
3AC3SOFTWARETYR A:191 , LYS A:196 , HOH A:2075 , HOH A:2079BINDING SITE FOR RESIDUE GOL A1001

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:26 -A:91
2A:153 -A:227

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:97 -Pro A:98

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1H8N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1H8N)

(-) Exons   (0, 0)

(no "Exon" information available for 1H8N)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:219
                                                                                                                                                                                                                                                           
               SCOP domains d1h8na1 A:3-109 Immunoglobulin light chain kappa variable domain, VL-kappa                                 d1h8na2 A:132-243 Immunoglobulin heavy chain variable domain, VH                                                 SCOP domains
               CATH domains -1h8nA01 A:4-134 Immunoglobulins                                                                              1h8nA02 A:135-233 Immunoglobulins                                                                  ---------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee....eee......eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhh.eeeeee......ee...eeee...eeeee...ee.....eeeeeeee..hhhhh.eeeeee.....eeeeeeee....eeee.hhhh..eeeeeehhh.eeeeee...hhhhheeeeeee..ee...eeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h8n A   3 KDIVLTQSHKFMSTSVGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYSSYPLTFGAGTKLELQVQLQESGGELVRPGASVKLSCKASGYTFTSYWINWVKQRPGQGLEWIGNIYPSDSYTNYNQKFKDKATLTVDKSSSTAYMQLSSLTSEDSAVYFCARWGYWGQGTLVTVSA 243
                                    12        22        32        42        52        62        72        82        92       102      |134       144       154       164       174       184       194       204       214       224       234         
                                                                                                                                    109|                                                                                                               
                                                                                                                                     132
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1H8N)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1H8N)

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    Tyr A:97 - Pro A:98   [ RasMol ]  
 

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  1h8n
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 1H8N)

(-) Related Entries Specified in the PDB File

1h8o THREE-DIMENSIONAL STRUCTURE OF ANTI-AMPICILLIN SINGLE CHAIN FV FRAGMENT.
1h8s THREE-DIMENSIONAL STRUCTURE OF ANTI-AMPICILLIN SINGLE CHAIN FV FRAGMENT COMPLEXED WITH THE HAPTEN.