1H84 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   COVALENT ADDUCT BETWEEN POLYAMINE OXIDASE AND N1ETHYLN11 ((CYCLOHEPTYL)METHYL)4,8DIAZAUNDECANE AT PH 4.6

Authors :   C. Binda, A. Coda, R. Angelini, R. Federico, P. Ascenzi, A. Mattevi

Date :   24 Jan 01 (Deposition) - 31 Jan 01 (Release) - 20 Nov 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C  (2x)

Keywords :   Flavin-Dependent Amine Oxidase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Binda, R. Angelini, R. Federico, P. Ascenzi, A. Mattevi
Structural Bases For Inhibitor Binding And Catalysis In Polyamine Oxidase
Biochemistry V. 40 2766 2001
PubMed-ID: 11258887 | Reference-DOI: 10.1021/BI002751J

Molecule 1 - POLYAMINE OXIDASE
	Chains	:	A, B, C
	EC Number	:	1.5.3.11
	Fragment	:	FAD-BINDING DOMAIN
	Organism Common	:	MAIZE
	Organism Scientific	:	ZEA MAYS
	Organism Taxid	:	4577

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 15)

No.	Name	Count	Type	Full Name
1	FAD	3	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	FCA	1	Ligand/Ion	ALPHA-D-FUCOSE
3	MAN	2	Ligand/Ion	ALPHA-D-MANNOSE
4	NAG	6	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
5	NBA	3	Ligand/Ion	3-[(3-{[3-(METHYLAMINO)PROPYL]AMINO}PROPYL)AMINO]PROPANE-1,1-DIOL

Biological Unit 1 (3, 8)

No.	Name	Count	Type	Full Name
1	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	FCA	-1	Ligand/Ion	ALPHA-D-FUCOSE
3	MAN	-1	Ligand/Ion	ALPHA-D-MANNOSE
4	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
5	NBA	2	Ligand/Ion	3-[(3-{[3-(METHYLAMINO)PROPYL]AMINO}PROPYL)AMINO]PROPANE-1,1-DIOL

Biological Unit 2 (5, 14)

No.	Name	Count	Type	Full Name
1	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	FCA	2	Ligand/Ion	ALPHA-D-FUCOSE
3	MAN	4	Ligand/Ion	ALPHA-D-MANNOSE
4	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
5	NBA	2	Ligand/Ion	3-[(3-{[3-(METHYLAMINO)PROPYL]AMINO}PROPYL)AMINO]PROPANE-1,1-DIOL

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:65 , TRP A:73 , ASN A:77 , TYR A:197 , HOH A:2235	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 601 THROUGH NAG A 602 BOUND TO ASN A 77
2	AC2	SOFTWARE	ASN B:48 , ASN B:65 , TRP B:73 , ASN B:77 , TYR B:197 , HOH B:2245	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B 601 THROUGH NAG B 602 BOUND TO ASN B 77
3	AC3	SOFTWARE	VAL B:256 , HOH B:2118 , ASN C:65 , TRP C:73 , ASN C:77 , TYR C:197 , HOH C:2263	BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 601 THROUGH MAN C 605 BOUND TO ASN C 77
4	AC4	SOFTWARE	VAL A:10 , GLY A:11 , GLY A:13 , MET A:14 , SER A:15 , LEU A:34 , GLU A:35 , ALA A:36 , GLY A:42 , ARG A:43 , MET A:44 , LEU A:56 , GLY A:57 , ALA A:58 , ASN A:59 , TRP A:60 , GLU A:62 , TYR A:169 , GLU A:170 , PHE A:189 , LYS A:235 , VAL A:237 , SER A:265 , LEU A:275 , TYR A:298 , PHE A:398 , TYR A:399 , THR A:402 , PHE A:403 , GLY A:429 , GLU A:430 , GLY A:438 , TYR A:439 , VAL A:440 , ALA A:443 , HOH A:2009 , HOH A:2017 , HOH A:2018 , HOH A:2124 , HOH A:2204 , HOH A:2228 , HOH A:2233 , HOH A:2234	BINDING SITE FOR RESIDUES FAD A 590 AND NBA A 591
5	AC5	SOFTWARE	VAL B:10 , GLY B:11 , GLY B:13 , MET B:14 , SER B:15 , LEU B:34 , GLU B:35 , ALA B:36 , GLY B:42 , ARG B:43 , LEU B:56 , GLY B:57 , ALA B:58 , ASN B:59 , TRP B:60 , GLU B:62 , PHE B:89 , TYR B:169 , GLU B:170 , LYS B:235 , VAL B:237 , SER B:265 , TYR B:298 , PHE B:398 , TYR B:399 , THR B:402 , PHE B:403 , GLY B:429 , GLU B:430 , GLY B:438 , TYR B:439 , VAL B:440 , ALA B:443 , HOH B:2010 , HOH B:2122 , HOH B:2123 , HOH B:2241 , HOH B:2242 , HOH B:2243 , HOH B:2244	BINDING SITE FOR RESIDUES FAD B 590 AND NBA B 591
6	AC6	SOFTWARE	VAL C:10 , GLY C:11 , GLY C:13 , MET C:14 , SER C:15 , LEU C:34 , GLU C:35 , ALA C:36 , THR C:37 , GLY C:42 , ARG C:43 , MET C:44 , LEU C:56 , GLY C:57 , ALA C:58 , ASN C:59 , TRP C:60 , GLU C:62 , TYR C:169 , GLU C:170 , ASP C:194 , LYS C:235 , VAL C:237 , SER C:265 , LEU C:275 , TYR C:298 , PHE C:398 , TYR C:399 , THR C:402 , PHE C:403 , GLY C:429 , GLU C:430 , GLY C:438 , TYR C:439 , VAL C:440 , ALA C:443 , HOH C:2010 , HOH C:2217 , HOH C:2245 , HOH C:2257 , HOH C:2258 , HOH C:2259 , HOH C:2260 , HOH C:2261	BINDING SITE FOR RESIDUES FAD C 590 AND NBA C 591

Asymmetric Unit

No.	Residues
1	A:457	-	A:463
2	B:457	-	B:463
3	C:457	-	C:463

Asymmetric Unit

No.	Residues
1	Val A:184	-	Pro A:185
2	Lys A:279	-	Pro A:280
3	Val B:184	-	Pro B:185
4	Lys B:279	-	Pro B:280
5	Val C:184	-	Pro C:185
6	Lys C:279	-	Pro C:280

(no "SAP(SNP)/Variant" information available for 1H84)

(no "PROSITE Motif" information available for 1H84)

(no "Exon" information available for 1H84)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:459
 aligned with PAO_MAIZE | O64411 from UniProtKB/Swiss-Prot  Length:500

    Alignment length:459
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482         
            PAO_MAIZE    33 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKMC 491
               SCOP domains d1h84a1 A:5-293,A:406-463 Polyamine oxidase                                                                                                                                                                                                                                                      d1h84a2 A:294-405 Polyamine oxidase                                                                             d1h84a1 A:5-293,A:406-463 Polyamine oxidase                SCOP domains
               CATH domains 1h84A01 A:5-87,A:187-292,A:412-463  [code=3.50.50.60, no name defined]             1h84A02 A:88-186,A:293-411  [code=3.90.660.10, no name defined]                                    1h84A01 A:5-87,A:187-292,A:412-463  [code=3.50.50.60, no name defined]                                    1h84A02 A:88-186,A:293-411  [code=3.90.660.10, no name defined]                                                        1h84A01 A:5-87,A:187-292,A:412-463                   CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..hhhhhhhhhhhhhh....eeee...........eeee..eeee....eeeee......hhhhhhhh.....eee....hhhh.eee......hhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.............hhhhhhhh.eeeee......hhhhhhhhhh...............ee....eeeeee....eeeee....eeee.eeee..hhhhhhh...eee...hhhhhhhhhhheee.eeeeeee.............eeeee........eeee.........eeeeeeehhhhhhhhh.hhhhhhhhhhhhhhhhh.........eee.............eee.....hhhhhhh.......eee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h84 A   5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKMC 463
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454

Chain B from PDB  Type:PROTEIN  Length:462
 aligned with PAO_MAIZE | O64411 from UniProtKB/Swiss-Prot  Length:500

    Alignment length:462
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492  
            PAO_MAIZE    33 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKMCKYH 494
               SCOP domains d1h84b1 B:5-293,B:406-466 Polyamine oxidase                                                                                                                                                                                                                                                      d1h84b2 B:294-405 Polyamine oxidase                                                                             d1h84b1 B:5-293,B:406-466 Polyamine oxidase                   SCOP domains
               CATH domains 1h84B01 B:5-87,B:187-292,B:412-466  [code=3.50.50.60, no name defined]             1h84B02 B:88-186,B:293-411  [code=3.90.660.10, no name defined]                                    1h84B01 B:5-87,B:187-292,B:412-466  [code=3.50.50.60, no name defined]                                    1h84B02 B:88-186,B:293-411  [code=3.90.660.10, no name defined]                                                        1h84B01 B:5-87,B:187-292,B:412-466                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhh...eeeee...........eeee..eeee....eeeee......hhhhhhhh.....eee....hhhh.eee......hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.............hhhhhhhh.eeeee......hhhhhhhhhh...............ee....eeeeeee..eeeeee....eeee.eeee..hhhhhhh...eee...hhhhhhhhhhheee.eeeeeee.............eeeee........eeee.........eeeeeeehhhhhhhhh.hhhhhhhhhhhhhhhhh.........eee.............eee.....hhhhhhhhhh....eee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1h84 B   5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKMCKYH 466
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464

Chain C from PDB  Type:PROTEIN  Length:462
 aligned with PAO_MAIZE | O64411 from UniProtKB/Swiss-Prot  Length:500

    Alignment length:462
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492  
            PAO_MAIZE    33 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKMCKYH 494
               SCOP domains d1h84c1 C:5-293,C:406-466 Polyamine oxidase                                                                                                                                                                                                                                                      d1h84c2 C:294-405 Polyamine oxidase                                                                             d1h84c1 C:5-293,C:406-466 Polyamine oxidase                   SCOP domains
               CATH domains 1h84C01 C:5-87,C:187-292,C:412-466  [code=3.50.50.60, no name defined]             1h84C02 C:88-186,C:293-411  [code=3.90.660.10, no name defined]                                    1h84C01 C:5-87,C:187-292,C:412-466  [code=3.50.50.60, no name defined]                                    1h84C02 C:88-186,C:293-411  [code=3.90.660.10, no name defined]                                                        1h84C01 C:5-87,C:187-292,C:412-466                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee..hhhhhhhhhhhhhh....eeee...........eeee..eeee....eeeee......hhhhhhhh.....eee....hhhh.eee......hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhh......hhhhhhhhhhhhhhhhh.............hhhhhhhh.eeeee......hhhhhhhhh................ee....eeeeeee..eeeeee....eeee.eeee..hhhhhhh...eee...hhhhhhhhhhheee.eeeeeee.............eeeee........eeee.........eeeeeeehhhhhhhhh.hhhhhhhhhhhhhhhhh.........eee.............eee.....hhhhhhhhhh....eee.hhhhh.....hhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1h84 C   5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTVPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEGKGREFFLYASSRRGYYGVWQEFEKQYPDANVLLVTVTDEESRRIEQQSDEQTKAEIMQVLRKMFPGKDVPDATDILVPRWWSDRFYKGTFSNWPVGVNRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKKMCKYH 466
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: FAD-linked reductases, C-terminal domain (181)

Superfamily: FAD-linked reductases, C-terminal domain (181)

Family: L-aminoacid/polyamine oxidase (66)

Protein domain: Polyamine oxidase (7)

Maize (Zea mays) [TaxId: 4577] (7)

1a	d1h84a2	A:294-405
1b	d1h84b2	B:294-405
1c	d1h84c2	C:294-405

Class: Alpha and beta proteins (a/b) (23833)

Fold: FAD/NAD(P)-binding domain (331)

Superfamily: FAD/NAD(P)-binding domain (331)

Family: FAD-linked reductases, N-terminal domain (156)

Protein domain: Polyamine oxidase (7)

Maize (Zea mays) [TaxId: 4577] (7)

2a	d1h84a1	A:5-293,A:406-463
2b	d1h84b1	B:5-293,B:406-466
2c	d1h84c1	C:5-293,C:406-466

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(bba) Sandwich (528)

Topology: FAD/NAD(P)-binding domain (373)

Homologous Superfamily: [code=3.50.50.60, no name defined] (373)

Maize (Zea mays) (5)

1a	1h84A01	A:5-87,A:187-292,A:412-463
1b	1h84B01	B:5-87,B:187-292,B:412-466
1c	1h84C01	C:5-87,C:187-292,C:412-466

Architecture: Alpha-Beta Complex (3881)

Topology: Polyamine Oxidase; Chain A, domain 2 (62)

Homologous Superfamily: [code=3.90.660.10, no name defined] (61)

Maize (Zea mays) (5)

2a	1h84A02	A:88-186,A:293-411
2b	1h84B02	B:88-186,B:293-411
2c	1h84C02	C:88-186,C:293-411

(no "Pfam Domain" information available for 1H84)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (PAO_MAIZE | O64411)

molecular function
	GO:0052898	N1-acetylspermidine:oxygen oxidoreductase (propane-1,3-diamine-forming) activity	Catalysis of the reaction: H(2)O + N(1)-acetylspermidine + O(2) = 1,3-diaminopropane + 4-acetamidobutanal + H(2)O(2).
	GO:0052893	N1-acetylspermine:oxygen oxidoreductase (propane-1,3-diamine-forming) activity	Catalysis of the reaction: N1-acetylspermine + oxygen + H2O = N-(3-acetamidopropyl)-4-aminobutanal + propane-1,3-diamine + hydrogen peroxide.
	GO:0052897	N8-acetylspermidine:oxygen oxidoreductase (propane-1,3-diamine-forming) activity	Catalysis of the reaction: H(2)O + N(8)-acetylspermidine + O(2) = 1,3-diaminopropane + 4-acetamidobutanal + H(2)O(2).
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0052896	spermidine oxidase (propane-1,3-diamine-forming) activity	Catalysis of the reaction: H(2)O + O(2) + spermidine = 1,3-diaminopropane + 4-aminobutanal + H(2)O(2).
	GO:0052900	spermine oxidase (propane-1,3-diamine-forming) activity	Catalysis of the reaction: H(2)O + O(2) + spermine = 1,3-diaminopropane + H(2)O(2) + N-(3-aminopropyl)-4-aminobutanal.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Asymmetric Unit
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		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Lys A:279 - Pro A:280	[ RasMol ]
		Lys B:279 - Pro B:280	[ RasMol ]
		Lys C:279 - Pro C:280	[ RasMol ]
		Val A:184 - Pro A:185	[ RasMol ]
		Val B:184 - Pro B:185	[ RasMol ]
		Val C:184 - Pro C:185	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	1h84
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
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	PAO_MAIZE \| O64411
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		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

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	1.5.3.11
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
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UniProtKB/Swiss-Prot
	PAO_MAIZE \| O64411	:	1b37 1b5q 1h81 1h82 1h83 1h86 3kpf 3ku9 3l1r

1b37	A 30 ANGSTROM U-SHAPED CATALYTIC TUNNEL IN THE CRYSTAL STRUCTURE OF POLYAMINE OXIDASE
1b5q	A 30 ANGSTROM U-SHAPED CATALYTIC TUNNEL IN THE CRYSTAL STRUCTURE OF POLYAMINE OXIDASE
1h81	STRUCTURE OF POLYAMINE OXIDASE IN THE REDUCED STATE
1h82	STRUCTURE OF POLYAMINE OXIDASE IN COMPLEX WITH GUAZATINE
1h83	STRUCTURE OF POLYAMINE OXIDASE IN COMPLEX WITH 1,8-DIAMINOOCTANE 8DIAZAUNDECANE AT PH 4.6
1h86	COVALENT ADDUCT BETWEEN POLYAMINE OXIDASE AND N1ETHYLN11((CYCLOHEPTYL)METHYL)4, 8DIAZAUNDECANE AT PH 7.0

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 15)

Sites (6, 6)

SS Bonds (3, 3)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 6)

CATH Domains (2, 6)

Pfam Domains (0, 0)

Gene Ontology (7, 7)

Visualization

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Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File