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1H84
Asym. Unit
Info
Asym.Unit (256 KB)
Biol.Unit 1 (167 KB)
Biol.Unit 2 (169 KB)
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(1)
Title
:
COVALENT ADDUCT BETWEEN POLYAMINE OXIDASE AND N1ETHYLN11 ((CYCLOHEPTYL)METHYL)4,8DIAZAUNDECANE AT PH 4.6
Authors
:
C. Binda, A. Coda, R. Angelini, R. Federico, P. Ascenzi, A. Mattevi
Date
:
24 Jan 01 (Deposition) - 31 Jan 01 (Release) - 20 Nov 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C (2x)
Keywords
:
Flavin-Dependent Amine Oxidase, Oxidoreductase
(Keyword Search:
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Reference
:
C. Binda, R. Angelini, R. Federico, P. Ascenzi, A. Mattevi
Structural Bases For Inhibitor Binding And Catalysis In Polyamine Oxidase
Biochemistry V. 40 2766 2001
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Hetero Components
(5, 15)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
2a: ALPHA-D-FUCOSE (FCAa)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
5a: 3-[(3-{[3-(METHYLAMINO)PROPYL]AMIN... (NBAa)
5b: 3-[(3-{[3-(METHYLAMINO)PROPYL]AMIN... (NBAb)
5c: 3-[(3-{[3-(METHYLAMINO)PROPYL]AMIN... (NBAc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
3
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
FCA
1
Ligand/Ion
ALPHA-D-FUCOSE
3
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
NBA
3
Ligand/Ion
3-[(3-{[3-(METHYLAMINO)PROPYL]AMINO}PROPYL)AMINO]PROPANE-1,1-DIOL
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:65 , TRP A:73 , ASN A:77 , TYR A:197 , HOH A:2235
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG A 601 THROUGH NAG A 602 BOUND TO ASN A 77
2
AC2
SOFTWARE
ASN B:48 , ASN B:65 , TRP B:73 , ASN B:77 , TYR B:197 , HOH B:2245
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG B 601 THROUGH NAG B 602 BOUND TO ASN B 77
3
AC3
SOFTWARE
VAL B:256 , HOH B:2118 , ASN C:65 , TRP C:73 , ASN C:77 , TYR C:197 , HOH C:2263
BINDING SITE FOR POLY-SACCHARIDE RESIDUES NAG C 601 THROUGH MAN C 605 BOUND TO ASN C 77
4
AC4
SOFTWARE
VAL A:10 , GLY A:11 , GLY A:13 , MET A:14 , SER A:15 , LEU A:34 , GLU A:35 , ALA A:36 , GLY A:42 , ARG A:43 , MET A:44 , LEU A:56 , GLY A:57 , ALA A:58 , ASN A:59 , TRP A:60 , GLU A:62 , TYR A:169 , GLU A:170 , PHE A:189 , LYS A:235 , VAL A:237 , SER A:265 , LEU A:275 , TYR A:298 , PHE A:398 , TYR A:399 , THR A:402 , PHE A:403 , GLY A:429 , GLU A:430 , GLY A:438 , TYR A:439 , VAL A:440 , ALA A:443 , HOH A:2009 , HOH A:2017 , HOH A:2018 , HOH A:2124 , HOH A:2204 , HOH A:2228 , HOH A:2233 , HOH A:2234
BINDING SITE FOR RESIDUES FAD A 590 AND NBA A 591
5
AC5
SOFTWARE
VAL B:10 , GLY B:11 , GLY B:13 , MET B:14 , SER B:15 , LEU B:34 , GLU B:35 , ALA B:36 , GLY B:42 , ARG B:43 , LEU B:56 , GLY B:57 , ALA B:58 , ASN B:59 , TRP B:60 , GLU B:62 , PHE B:89 , TYR B:169 , GLU B:170 , LYS B:235 , VAL B:237 , SER B:265 , TYR B:298 , PHE B:398 , TYR B:399 , THR B:402 , PHE B:403 , GLY B:429 , GLU B:430 , GLY B:438 , TYR B:439 , VAL B:440 , ALA B:443 , HOH B:2010 , HOH B:2122 , HOH B:2123 , HOH B:2241 , HOH B:2242 , HOH B:2243 , HOH B:2244
BINDING SITE FOR RESIDUES FAD B 590 AND NBA B 591
6
AC6
SOFTWARE
VAL C:10 , GLY C:11 , GLY C:13 , MET C:14 , SER C:15 , LEU C:34 , GLU C:35 , ALA C:36 , THR C:37 , GLY C:42 , ARG C:43 , MET C:44 , LEU C:56 , GLY C:57 , ALA C:58 , ASN C:59 , TRP C:60 , GLU C:62 , TYR C:169 , GLU C:170 , ASP C:194 , LYS C:235 , VAL C:237 , SER C:265 , LEU C:275 , TYR C:298 , PHE C:398 , TYR C:399 , THR C:402 , PHE C:403 , GLY C:429 , GLU C:430 , GLY C:438 , TYR C:439 , VAL C:440 , ALA C:443 , HOH C:2010 , HOH C:2217 , HOH C:2245 , HOH C:2257 , HOH C:2258 , HOH C:2259 , HOH C:2260 , HOH C:2261
BINDING SITE FOR RESIDUES FAD C 590 AND NBA C 591
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1h84a2 (A:294-405)
1b: SCOP_d1h84b2 (B:294-405)
1c: SCOP_d1h84c2 (C:294-405)
2a: SCOP_d1h84a1 (A:5-293,A:406-463)
2b: SCOP_d1h84b1 (B:5-293,B:406-466)
2c: SCOP_d1h84c1 (C:5-293,C:406-466)
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Protein Domains
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-linked reductases, C-terminal domain
(181)
Superfamily
:
FAD-linked reductases, C-terminal domain
(181)
Family
:
L-aminoacid/polyamine oxidase
(66)
Protein domain
:
Polyamine oxidase
(7)
Maize (Zea mays) [TaxId: 4577]
(7)
1a
d1h84a2
A:294-405
1b
d1h84b2
B:294-405
1c
d1h84c2
C:294-405
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD-linked reductases, N-terminal domain
(156)
Protein domain
:
Polyamine oxidase
(7)
Maize (Zea mays) [TaxId: 4577]
(7)
2a
d1h84a1
A:5-293,A:406-463
2b
d1h84b1
B:5-293,B:406-466
2c
d1h84c1
C:5-293,C:406-466
[
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1h84A01 (A:5-87,A:187-292,A:412-463)
1b: CATH_1h84B01 (B:5-87,B:187-292,B:412-466)
1c: CATH_1h84C01 (C:5-87,C:187-292,C:412-466)
2a: CATH_1h84A02 (A:88-186,A:293-411)
2b: CATH_1h84B02 (B:88-186,B:293-411)
2c: CATH_1h84C02 (C:88-186,C:293-411)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Maize (Zea mays)
(5)
1a
1h84A01
A:5-87,A:187-292,A:412-463
1b
1h84B01
B:5-87,B:187-292,B:412-466
1c
1h84C01
C:5-87,C:187-292,C:412-466
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Polyamine Oxidase; Chain A, domain 2
(62)
Homologous Superfamily
:
[code=3.90.660.10, no name defined]
(61)
Maize (Zea mays)
(5)
2a
1h84A02
A:88-186,A:293-411
2b
1h84B02
B:88-186,B:293-411
2c
1h84C02
C:88-186,C:293-411
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Pfam Domains
(0, 0)
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