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(-) Description

Title :  ADENOVIRUS AD3 FIBRE HEAD
 
Authors :  C. Durmort, C. Stehlin, G. Schoehn, A. Mitraki, E. Drouet, S. Cusack, W. P. Burmeister
Date :  21 Jan 01  (Deposition) - 19 Jul 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Cell Receptor Recognition, Adenovirus, Ad3, Fibre, Receptor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Durmort, C. Stehlin, G. Schoehn, A. Mitraki, E. Drouet, S. Cusack, W. P. Burmeister
Structure Of The Fiber Head Of Ad3, A Non-Car- Binding Serotype Of Adenovirus
Virology V. 285 302 2001
PubMed-ID: 11437664  |  Reference-DOI: 10.1006/VIRO.2001.0967

(-) Compounds

Molecule 1 - ADENOVIRUS FIBRE PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Cellular Location: CYTOPLASM
    Expression System Plasmid: PACUW31
    Expression System Strain: JM109 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: HEAD DOMAIN RESIDUES 126-319
    Mutation: YES
    Organism Scientific: HUMAN ADENOVIRUS TYPE 3
    Organism Taxid: 45659
    Other Details: ONLY THE HEAD DOMAIN, START CODON INTRODUCED AT POSITION 126
    Strain: AD3

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric/Biological Unit (1, 8)
No.NameCountTypeFull Name
1SO48Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:242 , THR A:245 , HIS A:246 , HOH A:2269 , HOH A:2270 , HOH A:2271 , HOH A:2272 , HOH A:2273 , HOH A:2274BINDING SITE FOR RESIDUE SO4 A1320
2AC2SOFTWARELYS A:149 , GLN A:150 , ASN A:151 , HOH A:2275BINDING SITE FOR RESIDUE SO4 A1321
3AC3SOFTWAREGLY B:244 , THR B:245 , HIS B:246 , LYS B:275 , HOH B:2286 , HOH B:2287 , HOH B:2288BINDING SITE FOR RESIDUE SO4 B1320
4AC4SOFTWARELYS B:149 , GLN B:150 , ASN B:151 , HOH B:2034BINDING SITE FOR RESIDUE SO4 B1321
5AC5SOFTWARESER B:177 , ASP B:178 , TYR B:179 , HOH B:2022 , HOH B:2289 , HOH B:2290BINDING SITE FOR RESIDUE SO4 B1322
6AC6SOFTWARELYS C:149 , GLN C:150 , ASN C:151 , HOH C:2319BINDING SITE FOR RESIDUE SO4 C1320
7AC7SOFTWARELYS C:185 , THR C:301 , GLN C:302BINDING SITE FOR RESIDUE SO4 C1321
8AC8SOFTWARETYR B:250 , ARG B:276 , ALA C:199 , LYS C:258 , HOH C:2246 , HOH C:2321 , HOH C:2322 , HOH C:2323 , HOH C:2324 , HOH C:2325 , HOH C:2326BINDING SITE FOR RESIDUE SO4 C1322

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1H7Z)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1H7Z)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1H7Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1H7Z)

(-) Exons   (0, 0)

(no "Exon" information available for 1H7Z)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:191
 aligned with SPIKE_ADE03 | P04501 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:191
                                   138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318 
          SPIKE_ADE03   129 KNNTLWTGPKPEANCIIEYGKQNPDSKLTLILVKNGGIVNGYVTLMGASDYVNTLFKNKNVSINVELYFDATGHILPDSSSLKTDLELKYKQTADFSARGFMPSTTAYPFVLPNAGTHNENYIFGQCYYKASDGALFPLEVTVMLNKRLPDSRTSYVMTFLWSLNAGLAPETTQATLITSPFTFSYIREDD 319
               SCOP domains d1h7za_ A: Adenovirus fiber protein knob domain                                                                                                                                                 SCOP domains
               CATH domains 1h7zA00 A:129-319 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...................eeeeeeeeee..eeeeeeeeee.hhhhhhhhhh.eeeeeeeeee.................ee.........hhhhh...............hhh.eeeeeeeee.....eeeeeeeeee..........eeeeeeeeee................eeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h7z A 129 KNNTLWTGPKPEANCIIEYGKQNPDSKLTLILVKNGGIVNGYVTLMGASDYVNTLFKNKNVSINVELYFDATGHILPDSSSLKTDLELKYKQTADFSARGFMPSTTAYPFVLPNAGTHNENYIFGQCYYKASDGALFPLEVTVMLNKRLPDSRTSYVMTFLWSLNAGLAPETTQATLITSPFTFSYIREDD 319
                                   138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318 


Chain B from PDB  Type:PROTEIN  Length:191
 aligned with SPIKE_ADE03 | P04501 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:191
                                   138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318 
          SPIKE_ADE03   129 KNNTLWTGPKPEANCIIEYGKQNPDSKLTLILVKNGGIVNGYVTLMGASDYVNTLFKNKNVSINVELYFDATGHILPDSSSLKTDLELKYKQTADFSARGFMPSTTAYPFVLPNAGTHNENYIFGQCYYKASDGALFPLEVTVMLNKRLPDSRTSYVMTFLWSLNAGLAPETTQATLITSPFTFSYIREDD 319
               SCOP domains d1h7zb_ B: Adenovirus fiber protein knob domain                                                                                                                                                 SCOP domains
               CATH domains 1h7zB00 B:129-319 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...................eeeeeeeeee..eeeeeeeeee...hhhhhhhh.eeeeeeeeee.................ee.........hhhhh...................eeeeeeeee.....eeeeeeeeee..........eeeeeeeeee................eeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h7z B 129 KNNTLWTGPKPEANCIIEYGKQNPDSKLTLILVKNGGIVNGYVTLMGASDYVNTLFKNKNVSINVELYFDATGHILPDSSSLKTDLELKYKQTADFSARGFMPSTTAYPFVLPNAGTHNENYIFGQCYYKASDGALFPLEVTVMLNKRLPDSRTSYVMTFLWSLNAGLAPETTQATLITSPFTFSYIREDD 319
                                   138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318 


Chain C from PDB  Type:PROTEIN  Length:191
 aligned with SPIKE_ADE03 | P04501 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:191
                                   138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318 
          SPIKE_ADE03   129 KNNTLWTGPKPEANCIIEYGKQNPDSKLTLILVKNGGIVNGYVTLMGASDYVNTLFKNKNVSINVELYFDATGHILPDSSSLKTDLELKYKQTADFSARGFMPSTTAYPFVLPNAGTHNENYIFGQCYYKASDGALFPLEVTVMLNKRLPDSRTSYVMTFLWSLNAGLAPETTQATLITSPFTFSYIREDD 319
               SCOP domains d1h7zc_ C: Adenovirus fiber protein knob domain                                                                                                                                                 SCOP domains
               CATH domains 1h7zC00 C:129-319 Adenovirus Type 5 Fiber Protein (Receptor Binding Domain)                                                                                                                     CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee...................eeeeeeeeee..eeeeeeeeee...hhhhhhhh.eeeeeeeeee.................ee.........hhhhh...............hhh.eeeeeeeee.....eeeeeeeeee..........eeeeeeeeee................eeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h7z C 129 KNNTLWTGPKPEANCIIEYGKQNPDSKLTLILVKNGGIVNGYVTLMGASDYVNTLFKNKNVSINVELYFDATGHILPDSSSLKTDLELKYKQTADFSARGFMPSTTAYPFVLPNAGTHNENYIFGQCYYKASDGALFPLEVTVMLNKRLPDSRTSYVMTFLWSLNAGLAPETTQATLITSPFTFSYIREDD 319
                                   138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1H7Z)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (SPIKE_ADE03 | P04501)
biological process
    GO:0007155    cell adhesion    The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
    GO:0046718    viral entry into host cell    The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
    GO:0019058    viral life cycle    A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome.
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
    GO:0019062    virion attachment to host cell    The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
    GO:0042025    host cell nucleus    A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SPIKE_ADE03 | P04501: 4liy 4wyj

(-) Related Entries Specified in the PDB File

1knb ADENOVIRUS TYPE 5 FIBER PROTEIN