1H47 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   STRUCTURES OF MECP SYNTHASE IN COMPLEX WITH (I) CMP AND (II) CMP AND PRODUCT

Authors :   L. E. Kemp, M. S. Alphey, C. S. Bond, W. N. Hunter

Date :   24 Feb 03 (Deposition) - 22 Oct 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C  (1x)
Biol. Unit 2: D,E,F  (1x)

Keywords :   Synthase, Isoprenoid, Lyase, Isoprene Biosynthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. E. Kemp, M. S. Alphey, C. S. Bond, M. Ferguson, S. Hecht, A. Bacher, W. Eisenreich, F. Rohdich, W. N. Hunter
The Identification Of Isoprenoids That Bind In The Intersubunit Cavity Of Escherichia Coli 2C-Methyl-D-Erythritol-2, 4-Cyclodiphosphate Synthase By Complementary Biophysical Methods
Acta Crystallogr. , Sect. D V. 61 45 2005
PubMed-ID: 15608374 | Reference-DOI: 10.1107/S0907444904025971
(for further references see the PDB file header)

Molecule 1 - 2C-METHYL-D-ERYTHRITOL-2,4-CYCLODIPHOSPHATE SYNTHASE
	Chains	:	A, B, C, D, E, F
	EC Number	:	4.6.1.12
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Expression System Vector	:	PET15B
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	511693
	Strain	:	BL21
	Synonym	:	MECPS, MECDP-SYNTHASE, ISPF, MECS

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B	C
Biological Unit 2 (1x)	:				D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 14)

No.	Name	Count	Type	Full Name
1	C5P	6	Ligand/Ion	CYTIDINE-5'-MONOPHOSPHATE
2	GPP	2	Ligand/Ion	GERANYL DIPHOSPHATE
3	ZN	6	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	C5P	3	Ligand/Ion	CYTIDINE-5'-MONOPHOSPHATE
2	GPP	1	Ligand/Ion	GERANYL DIPHOSPHATE
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	C5P	3	Ligand/Ion	CYTIDINE-5'-MONOPHOSPHATE
2	GPP	1	Ligand/Ion	GERANYL DIPHOSPHATE
3	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:8 , HIS A:10 , HIS A:42	BINDING SITE FOR RESIDUE ZN A1158
02	AC2	SOFTWARE	ASP B:8 , HIS B:10 , HIS B:42	BINDING SITE FOR RESIDUE ZN B1158
03	AC3	SOFTWARE	ASP C:8 , HIS C:10 , HIS C:42	BINDING SITE FOR RESIDUE ZN C1158
04	AC4	SOFTWARE	ASP D:8 , HIS D:10 , HIS D:42	BINDING SITE FOR RESIDUE ZN D1158
05	AC5	SOFTWARE	ASP E:8 , HIS E:10 , HIS E:42	BINDING SITE FOR RESIDUE ZN E1158
06	AC6	SOFTWARE	ASP F:8 , HIS F:10 , HIS F:42 , HOH F:2037	BINDING SITE FOR RESIDUE ZN F1158
07	AC7	SOFTWARE	PHE A:7 , GLY A:138 , PHE A:139 , ARG A:142 , GLU A:149 , PHE B:7 , GLY B:138 , PHE B:139 , THR B:140 , ARG B:142 , GLU B:149 , HOH B:2022 , PHE C:7 , GLY C:138 , PHE C:139 , THR C:140 , ARG C:142 , GLU C:149 , ARG D:142	BINDING SITE FOR RESIDUE GPP A1157
08	AC8	SOFTWARE	ALA A:100 , PRO A:103 , LYS A:104 , MET A:105 , LEU A:106 , ALA A:131 , THR A:132 , THR A:133 , ASP C:56 , GLY C:58 , HOH C:2010	BINDING SITE FOR RESIDUE C5P A1159
09	AC9	SOFTWARE	ASP A:56 , GLY A:58 , HOH A:2003 , ALA B:100 , PRO B:103 , LYS B:104 , MET B:105 , LEU B:106 , ALA B:131 , THR B:132 , THR B:133	BINDING SITE FOR RESIDUE C5P B1157
10	BC1	SOFTWARE	ASP B:56 , GLY B:58 , HOH B:2008 , ALA C:100 , PRO C:103 , LYS C:104 , MET C:105 , LEU C:106 , ALA C:131 , THR C:132 , THR C:133 , GLU C:135	BINDING SITE FOR RESIDUE C5P C1157
11	BC2	SOFTWARE	ARG B:142 , PHE D:7 , GLY D:138 , PHE D:139 , ARG D:142 , GLU D:149 , PHE E:7 , GLY E:138 , PHE E:139 , ARG E:142 , GLU E:149 , PHE F:7 , GLY F:138 , PHE F:139 , ARG F:142 , GLU F:149	BINDING SITE FOR RESIDUE GPP D1157
12	BC3	SOFTWARE	ALA D:100 , PRO D:103 , LYS D:104 , MET D:105 , LEU D:106 , ALA D:131 , THR D:132 , THR D:133 , GLU D:135 , ASP F:56 , GLY F:58 , HOH F:2008	BINDING SITE FOR RESIDUE C5P D1159
13	BC4	SOFTWARE	ASP D:56 , GLY D:58 , HOH D:2005 , ALA E:100 , PRO E:103 , LYS E:104 , MET E:105 , LEU E:106 , ALA E:131 , THR E:132 , THR E:133	BINDING SITE FOR RESIDUE C5P E1157
14	BC5	SOFTWARE	ASP E:56 , GLY E:58 , HOH E:2007 , ALA F:100 , PRO F:103 , LYS F:104 , MET F:105 , LEU F:106 , ALA F:131 , THR F:132 , THR F:133	BINDING SITE FOR RESIDUE C5P F1157

(no "SS Bond" information available for 1H47)

Asymmetric Unit

No.	Residues
1	Gly A:16	-	Pro A:17
2	Ala A:102	-	Pro A:103
3	Gly B:16	-	Pro B:17
4	Ala B:102	-	Pro B:103
5	Gly C:16	-	Pro C:17
6	Ala C:102	-	Pro C:103
7	Gly D:16	-	Pro D:17
8	Ala D:102	-	Pro D:103
9	Gly E:16	-	Pro E:17
10	Ala E:102	-	Pro E:103
11	Ala F:102	-	Pro F:103

(no "SAP(SNP)/Variant" information available for 1H47)

Asymmetric Unit (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ISPF	PS01350	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature.	ISPF_ECOLI	35-50	6	A:35-50 B:35-50 C:35-50 D:35-50 E:35-50 F:35-50

Biological Unit 1 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ISPF	PS01350	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature.	ISPF_ECOLI	35-50	3	A:35-50 B:35-50 C:35-50 - - -

Biological Unit 2 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ISPF	PS01350	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature.	ISPF_ECOLI	35-50	3	- - - D:35-50 E:35-50 F:35-50

(no "Exon" information available for 1H47)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:157
 aligned with ISPF_ECOLI | P62617 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:157
                             1                                                                                                                                                           
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       
           ISPF_ECOLI     - -MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK 156
               SCOP domains d1h47a_ A: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF                                                                                          SCOP domains
               CATH domains 1h47A00 A:0-156  [code=3.30.1330.50, no name defined]                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeee....eee..eee....ee......hhhhhhhhhhhhhhh...hhhhhh...hhhhh..hhhhhhhhhhhhhhhh..eeeeeeeeee.....hhhhhhhhhhhhhhhh..hhh.eeeeee....hhhhhh..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------ISPF            ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h47 A   0 EMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK 156
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149

Chain B from PDB  Type:PROTEIN  Length:158
 aligned with ISPF_ECOLI | P62617 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:158
                              1                                                                                                                                                           
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148        
           ISPF_ECOLI     - --MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK 156
               SCOP domains d1h47b_ B: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF                                                                                           SCOP domains
               CATH domains 1h47B00 B:-1-156  [code=3.30.1330.50, no name defined]                                                                                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeee....eee..eee....ee......hhhhhhhhhhhhhhh...hhhhhh..........hhhhhhhhhhhhhhhh..eeeeeeeeee.....hhhhhhhhhhhhhhhhh.hhh.eeeeee....hhhhhh..eeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------ISPF            ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h47 B  -1 LEMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK 156
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148

Chain C from PDB  Type:PROTEIN  Length:157
 aligned with ISPF_ECOLI | P62617 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:157
                             1                                                                                                                                                           
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       
           ISPF_ECOLI     - -MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK 156
               SCOP domains d1h47c_ C: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF                                                                                          SCOP domains
               CATH domains 1h47C00 C:0-156  [code=3.30.1330.50, no name defined]                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeee....eee..eee....ee......hhhhhhhhhhhhhhh...hhhhhh..........hhhhhhhhhhhhhhhh..eeeeeeeeee.....hhhhhhhhhhhhhhhhh.hhh.eeeeee....hhhhhh..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------ISPF            ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h47 C   0 EMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK 156
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149

Chain D from PDB  Type:PROTEIN  Length:157
 aligned with ISPF_ECOLI | P62617 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:157
                             1                                                                                                                                                           
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       
           ISPF_ECOLI     - -MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK 156
               SCOP domains d1h47d_ D: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF                                                                                          SCOP domains
               CATH domains 1h47D00 D:0-156  [code=3.30.1330.50, no name defined]                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeee....eee..eee....ee......hhhhhhhhhhhhhhh...hhhhhh...hhhhh..hhhhhhhhhhhhhhhh..eeeeeeeeee.....hhhhhhhhhhhhhhhh..hhh.eeeeee....hhhhhh..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------ISPF            ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h47 D   0 EMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK 156
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149

Chain E from PDB  Type:PROTEIN  Length:158
 aligned with ISPF_ECOLI | P62617 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:158
                              1                                                                                                                                                           
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148        
           ISPF_ECOLI     - --MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK 156
               SCOP domains d1h47e_ E: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF                                                                                           SCOP domains
               CATH domains 1h47E00 E:-1-156  [code=3.30.1330.50, no name defined]                                                                                                         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeee....eee..eee....eee.....hhhhhhhhhhhhhhh...hhhhhh..........hhhhhhhhhhhhhhh...eeeeeeeeee.....hhhhhhhhhhhhhhhhh.hhh.eeeeee....hhhhhh..eeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------ISPF            ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h47 E  -1 LEMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK 156
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148

Chain F from PDB  Type:PROTEIN  Length:157
 aligned with ISPF_ECOLI | P62617 from UniProtKB/Swiss-Prot  Length:159

    Alignment length:157
                             1                                                                                                                                                           
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       
           ISPF_ECOLI     - -MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK 156
               SCOP domains d1h47f_ F: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF                                                                                          SCOP domains
               CATH domains 1h47F00 F:0-156  [code=3.30.1330.50, no name defined]                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeee..eee..eee...eeee.....hhhhhhhhhhhhhhh...hhhhhh..........hhhhhhhhhhhhhhhh..eeeeeeeeee.....hhhhhhhhhhhhhhhhh.hhh.eeeeee....hhhhhh..eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------ISPF            ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1h47 F   0 EMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK 156
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Bacillus chorismate mutase-like (324)

Superfamily: IpsF-like (56)

Family: IpsF-like (35)

Protein domain: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (27)

Escherichia coli [TaxId: 562] (13)

1a	d1h47a_	A:
1b	d1h47b_	B:
1c	d1h47c_	C:
1d	d1h47d_	D:
1e	d1h47e_	E:
1f	d1h47f_	F:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: 60s Ribosomal Protein L30; Chain: A; (235)

Homologous Superfamily: [code=3.30.1330.50, no name defined] (46)

Escherichia coli. Organism_taxid: 511693. Strain: bl21. (3)

1a	1h47A00	A:0-156
1b	1h47C00	C:0-156
1c	1h47D00	D:0-156
1d	1h47F00	F:0-156
1e	1h47B00	B:-1-156
1f	1h47E00	E:-1-156

(no "Pfam Domain" information available for 1H47)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (ISPF_ECOLI | P62617)

molecular function
	GO:0008685	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity	Catalysis of the reaction: 4-CDP-2-C-methyl-D-erythritol 2-phosphate = 2-C-methyl-D-erythritol 2,4-cyclic diphosphate + CMP.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
	GO:0030145	manganese ion binding	Interacting selectively and non-covalently with manganese (Mn) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate.
	GO:0008299	isoprenoid biosynthetic process	The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
	GO:0016114	terpenoid biosynthetic process	The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure.
	GO:0006744	ubiquinone biosynthetic process	The chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme.

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		C5P	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		GPP	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		ZN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Ala A:102 - Pro A:103	[ RasMol ]
		Ala B:102 - Pro B:103	[ RasMol ]
		Ala C:102 - Pro C:103	[ RasMol ]
		Ala D:102 - Pro D:103	[ RasMol ]
		Ala E:102 - Pro E:103	[ RasMol ]
		Ala F:102 - Pro F:103	[ RasMol ]
		Gly A:16 - Pro A:17	[ RasMol ]
		Gly B:16 - Pro B:17	[ RasMol ]
		Gly C:16 - Pro C:17	[ RasMol ]
		Gly D:16 - Pro D:17	[ RasMol ]
		Gly E:16 - Pro E:17	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	1h47
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	ISPF_ECOLI \| P62617
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	4.6.1.12
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	ISPF_ECOLI \| P62617
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

1gx1	STRUCTURE OF 2C-METHYL-D-ERYTHRITOL-2,4- CYCLODIPHOSPHATE SYNTHASE
1h48	THE STRUCTURE OF 2C-METHYL-D-ERYTHRITOL 2, 4-CYCLODIPHOSPHATE SYNTHASE IN COMPLEX WITH CMP AND PRODUCT
1jy8	2C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE (ISPF)
1knj	CO-CRYSTAL STRUCTURE OF 2-C-METHYL-D- ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE (ISPF) FROM E. COLI INVOLVED INMEVALONATE- INDEPENDENT ISOPRENOID BIOSYNTHESIS, COMPLEXEDWITH CMP/MECDP/MN2+
1knk	CRYSTAL STRUCTURE OF 2-C-METHYL-D- ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE (ISPF) FROM E. COLI INVOLVED INMEVALONATE- INDEPENDENT ISOPRENOID BIOSYNTHESIS
1u3l	ISPF WITH MG AND CDP
1u3p	ISPF NATIVE
1u40	ISPF WITH 4-DIPHOSPHOCYTIDYL-2C-METHYL-D- ERYTHRITOL
1u43	ISPF WITH 4-DIPHOSPHOCYTIDYL-2C-METHYL-D- ERYTHRITOL 2-PHOSPHATE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 14)

Sites (14, 14)

SS Bonds (0, 0)

Cis Peptide Bonds (11, 11)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 6)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 6)

CATH Domains (1, 6)

Pfam Domains (0, 0)

Gene Ontology (10, 10)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File