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(-) Description

Title :  MOPII FROM CLOSTRIDIUM PASTEURIANUM (APO2)
 
Authors :  A. W. Schuettelkopf, J. A. Harrison, W. N. Hunter
Date :  28 Jan 02  (Deposition) - 08 Feb 02  (Release) - 16 Mar 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Transport Protein, Molybdate Binding, Mop (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. W. Schuettelkopf, J. A. Harrison, D. H. Boxer, W. N. Hunter
Passive Acquisition Of Ligand By The Mopii Molbindin From Clostridium Pasteurianum: Structures Of Apo And Oxyanion-Bound Forms
J. Biol. Chem. V. 277 15013 2002
PubMed-ID: 11836258  |  Reference-DOI: 10.1074/JBC.M201005200

(-) Compounds

Molecule 1 - MOLYBDATE BINDING PROTEIN II
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Organism Scientific: CLOSTRIDIUM PASTEURIANUM
    Organism Taxid: 1501
    Synonym: MOPII

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric/Biological Unit (2, 11)
No.NameCountTypeFull Name
1CL9Ligand/IonCHLORIDE ION
2MG2Ligand/IonMAGNESIUM ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:60 , SER A:61 , THR A:62 , SER E:40 , HOH E:2041BINDING SITE FOR RESIDUE CL A1069
02AC2SOFTWARELYS A:18 , HOH A:2020BINDING SITE FOR RESIDUE CL A1070
03AC3SOFTWAREASP A:63 , ASP B:63 , ASP C:63 , MG D:1070 , HOH D:2067 , HOH E:2060 , HOH F:2069BINDING SITE FOR RESIDUE MG A1071
04AC4SOFTWARELYS B:60 , SER B:61 , THR B:62 , SER D:40 , HOH D:2048BINDING SITE FOR RESIDUE CL B1069
05AC5SOFTWARELYS B:18 , HOH B:2021BINDING SITE FOR RESIDUE CL B1070
06AC6SOFTWARELYS C:60 , SER C:61 , THR C:62 , SER F:40 , HOH F:2051BINDING SITE FOR RESIDUE CL C1069
07AC7SOFTWARELYS C:18 , HOH C:2021BINDING SITE FOR RESIDUE CL C1070
08AC8SOFTWAREHOH B:2043 , SER D:4 , ALA D:5 , ARG D:6 , SER D:61BINDING SITE FOR RESIDUE CL D1069
09AC9SOFTWAREMG A:1071 , ASP D:63 , HOH D:2065 , HOH D:2067 , ASP E:63 , HOH E:2058 , HOH E:2060 , ASP F:63 , HOH F:2068 , HOH F:2069BINDING SITE FOR RESIDUE MG D1070
10BC1SOFTWAREHOH A:2042 , SER E:4 , ALA E:5 , ARG E:6 , SER E:61BINDING SITE FOR RESIDUE CL E1069
11BC2SOFTWAREHOH C:2046 , SER F:4 , ALA F:5 , ARG F:6 , SER F:61BINDING SITE FOR RESIDUE CL F1069

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1GUT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1GUT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1GUT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1GUT)

(-) Exons   (0, 0)

(no "Exon" information available for 1GUT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:67
 aligned with MOP2_CLOPA | P08854 from UniProtKB/Swiss-Prot  Length:68

    Alignment length:67
                                    11        21        31        41        51        61       
            MOP2_CLOPA    2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
               SCOP domains d1guta_ A: Molybdate/tungstate binding protein MOP                  SCOP domains
               CATH domains 1gutA00 A:2-68  [code=2.40.50.100, no name defined]                 CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeeeee...eeeeeeee....eeeeeeehhhhhhhh.....eeeee.hhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1gut A  2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
                                    11        21        31        41        51        61       


Chain B from PDB  Type:PROTEIN  Length:67
 aligned with MOP2_CLOPA | P08854 from UniProtKB/Swiss-Prot  Length:68

    Alignment length:67
                                    11        21        31        41        51        61       
            MOP2_CLOPA    2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
               SCOP domains d1gutb_ B: Molybdate/tungstate binding protein MOP                  SCOP domains
               CATH domains 1gutB00 B:2-68  [code=2.40.50.100, no name defined]                 CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeeeee...eeeeeeee....eeeeeeehhhhhhhh.....eeeee.hhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1gut B  2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
                                    11        21        31        41        51        61       


Chain C from PDB  Type:PROTEIN  Length:67
 aligned with MOP2_CLOPA | P08854 from UniProtKB/Swiss-Prot  Length:68

    Alignment length:67
                                    11        21        31        41        51        61       
            MOP2_CLOPA    2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
               SCOP domains d1gutc_ C: Molybdate/tungstate binding protein MOP                  SCOP domains
               CATH domains 1gutC00 C:2-68  [code=2.40.50.100, no name defined]                 CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeeeeeee...eeeeeeee....eeeeeeehhhhhhhh.....eeeee.hhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1gut C  2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
                                    11        21        31        41        51        61       


Chain D from PDB  Type:PROTEIN  Length:67
 aligned with MOP2_CLOPA | P08854 from UniProtKB/Swiss-Prot  Length:68

    Alignment length:67
                                    11        21        31        41        51        61       
            MOP2_CLOPA    2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
               SCOP domains d1gutd_ D: Molybdate/tungstate binding protein MOP                  SCOP domains
               CATH domains 1gutD00 D:2-68  [code=2.40.50.100, no name defined]                 CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeee...eeeeeeee....eeeeeeehhhhhhhh.....eeeeeehhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1gut D  2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
                                    11        21        31        41        51        61       


Chain E from PDB  Type:PROTEIN  Length:67
 aligned with MOP2_CLOPA | P08854 from UniProtKB/Swiss-Prot  Length:68

    Alignment length:67
                                    11        21        31        41        51        61       
            MOP2_CLOPA    2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
               SCOP domains d1gute_ E: Molybdate/tungstate binding protein MOP                  SCOP domains
               CATH domains 1gutE00 E:2-68  [code=2.40.50.100, no name defined]                 CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeee...eeeeeeee....eeeeeeehhhhhhhh.....eeeeeehhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1gut E  2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
                                    11        21        31        41        51        61       


Chain F from PDB  Type:PROTEIN  Length:67
 aligned with MOP2_CLOPA | P08854 from UniProtKB/Swiss-Prot  Length:68

    Alignment length:67
                                    11        21        31        41        51        61       
            MOP2_CLOPA    2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
               SCOP domains d1gutf_ F: Molybdate/tungstate binding protein MOP                  SCOP domains
               CATH domains 1gutF00 F:2-68  [code=2.40.50.100, no name defined]                 CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeee...eeeeeeee....eeeeeeehhhhhhhh.....eeeeeehhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1gut F  2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
                                    11        21        31        41        51        61
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1GUT)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (MOP2_CLOPA | P08854)
molecular function
    GO:0030151    molybdenum ion binding    Interacting selectively and non-covalently with molybdenum (Mo) ions.
biological process
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MOP2_CLOPA | P08854: 1gug 1gun 1guo 1gus

(-) Related Entries Specified in the PDB File

1gug MOPII FROM CLOSTRIDIUM PASTEURIANUM COMPLEXED WITH TUNGSTATE
1gun MOPII FROM CLOSTRIDIUM PASTEURIANUM COMPLEXED WITH MOLYBDATE (PARTIAL)
1guo MOPII FROM CLOSTRIDIUM PASTEURIANUM COMPLEXED WITH MOLYBDATE
1gus MOPII FROM CLOSTRIDIUM PASTEURIANUM (APO1)