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(-) Description

Title :  MOPII FROM CLOSTRIDIUM PASTEURIANUM (APO1)
 
Authors :  A. W. Schuettelkopf, J. A. Harrison, W. N. Hunter
Date :  28 Jan 02  (Deposition) - 08 Feb 02  (Release) - 16 Mar 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Transport Protein, Molbindin, Molybdate Binding, Mop (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. W. Schuettelkopf, J. A. Harrison, D. H. Boxer, W. N. Hunter
Passive Acquisition Of Ligand By The Mopii Molbindin From Clostridium Pasteurianum: Structures Of Apo And Oxyanion-Bound Forms
J. Biol. Chem. V. 277 15013 2002
PubMed-ID: 11836258  |  Reference-DOI: 10.1074/JBC.M201005200

(-) Compounds

Molecule 1 - MOLYBDATE BINDING PROTEIN II
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Organism Scientific: CLOSTRIDIUM PASTEURIANUM
    Organism Taxid: 1501
    Synonym: MOPII

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2MG2Ligand/IonMAGNESIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:63 , HOH A:2052 , HOH A:2053 , ASP B:63 , HOH B:2047 , HOH B:2048 , ASP C:63 , HOH C:2042 , HOH C:2043 , MG D:1070BINDING SITE FOR RESIDUE MG A1069
2AC2SOFTWAREHOH B:2033 , SER D:4 , ALA D:5 , ARG D:6 , SER D:61 , HOH D:2052BINDING SITE FOR RESIDUE CL D1069
3AC3SOFTWAREMG A:1069 , HOH A:2053 , HOH B:2048 , HOH C:2042 , ASP D:63 , HOH D:2053 , ASP E:63 , HOH E:2054 , ASP F:63 , HOH F:2045BINDING SITE FOR RESIDUE MG D1070
4AC4SOFTWAREHOH A:2034 , SER E:4 , ALA E:5 , ARG E:6 , SER E:61 , HOH E:2055BINDING SITE FOR RESIDUE CL E1069
5AC5SOFTWAREHOH C:2026 , SER F:4 , ALA F:5 , ARG F:6 , SER F:61 , HOH F:2046BINDING SITE FOR RESIDUE CL F1069

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1GUS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1GUS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1GUS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1GUS)

(-) Exons   (0, 0)

(no "Exon" information available for 1GUS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:67
 aligned with MOP2_CLOPA | P08854 from UniProtKB/Swiss-Prot  Length:68

    Alignment length:67
                                    11        21        31        41        51        61       
            MOP2_CLOPA    2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
               SCOP domains d1gusa_ A: Molybdate/tungstate binding protein MOP                  SCOP domains
               CATH domains 1gusA00 A:2-68  [code=2.40.50.100, no name defined]                 CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeee...eeeeeeee....eeeeeeehhhhhhh......eeeeeehhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1gus A  2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
                                    11        21        31        41        51        61       


Chain B from PDB  Type:PROTEIN  Length:67
 aligned with MOP2_CLOPA | P08854 from UniProtKB/Swiss-Prot  Length:68

    Alignment length:67
                                    11        21        31        41        51        61       
            MOP2_CLOPA    2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
               SCOP domains d1gusb_ B: Molybdate/tungstate binding protein MOP                  SCOP domains
               CATH domains 1gusB00 B:2-68  [code=2.40.50.100, no name defined]                 CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeee...eeeeeeee....eeeeeeehhhhhhh......eeeeeehhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1gus B  2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
                                    11        21        31        41        51        61       


Chain C from PDB  Type:PROTEIN  Length:67
 aligned with MOP2_CLOPA | P08854 from UniProtKB/Swiss-Prot  Length:68

    Alignment length:67
                                    11        21        31        41        51        61       
            MOP2_CLOPA    2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
               SCOP domains d1gusc_ C: Molybdate/tungstate binding protein MOP                  SCOP domains
               CATH domains 1gusC00 C:2-68  [code=2.40.50.100, no name defined]                 CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeee...eeeeeeee....eeeeeeehhhhhhh......eeeeeehhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1gus C  2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
                                    11        21        31        41        51        61       


Chain D from PDB  Type:PROTEIN  Length:67
 aligned with MOP2_CLOPA | P08854 from UniProtKB/Swiss-Prot  Length:68

    Alignment length:67
                                    11        21        31        41        51        61       
            MOP2_CLOPA    2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
               SCOP domains d1gusd_ D: Molybdate/tungstate binding protein MOP                  SCOP domains
               CATH domains 1gusD00 D:2-68  [code=2.40.50.100, no name defined]                 CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeee...eeeeeeee....eeeeeeehhhhhhhh.....eeeeeehhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1gus D  2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
                                    11        21        31        41        51        61       


Chain E from PDB  Type:PROTEIN  Length:67
 aligned with MOP2_CLOPA | P08854 from UniProtKB/Swiss-Prot  Length:68

    Alignment length:67
                                    11        21        31        41        51        61       
            MOP2_CLOPA    2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
               SCOP domains d1guse_ E: Molybdate/tungstate binding protein MOP                  SCOP domains
               CATH domains 1gusE00 E:2-68  [code=2.40.50.100, no name defined]                 CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeee...eeeeeeee....eeeeeeehhhhhhhh.....eeeeeehhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1gus E  2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
                                    11        21        31        41        51        61       


Chain F from PDB  Type:PROTEIN  Length:67
 aligned with MOP2_CLOPA | P08854 from UniProtKB/Swiss-Prot  Length:68

    Alignment length:67
                                    11        21        31        41        51        61       
            MOP2_CLOPA    2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
               SCOP domains d1gusf_ F: Molybdate/tungstate binding protein MOP                  SCOP domains
               CATH domains 1gusF00 F:2-68  [code=2.40.50.100, no name defined]                 CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeeee...eeeeeeee....eeeeeeehhhhhhhh.....eeeeeehhhhheee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  1gus F  2 SISARNQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSVEELGVKEGAELTAVVKSTDVMILA 68
                                    11        21        31        41        51        61
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1GUS)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (MOP2_CLOPA | P08854)
molecular function
    GO:0030151    molybdenum ion binding    Interacting selectively and non-covalently with molybdenum (Mo) ions.
biological process
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.

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  1gus
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MOP2_CLOPA | P08854: 1gug 1gun 1guo 1gut

(-) Related Entries Specified in the PDB File

1gug MOPII FROM CLOSTRIDIUM PASTEURIANUM COMPLEXED WITH TUNGSTATE
1gun MOPII FROM CLOSTRIDIUM PASTEURIANUM COMPLEXED WITH MOLYBDATE (PARTIAL)
1guo MOPII FROM CLOSTRIDIUM PASTEURIANUM COMPLEXED WITH MOLYBDATE
1gut MOPII FROM CLOSTRIDIUM PASTEURIANUM (APO2)