1GSP - JenaLib

Title :   RIBONUCLEASE T1 COMPLEXED WITH 2',3'-CGPS, 1 DAY

Authors :   I. Zegers, L. Wyns

Date :   28 Nov 97 (Deposition) - 25 Feb 98 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym./Biol. Unit : A

Keywords :   Hydrolase, Endoribonuclease (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   I. Zegers, R. Loris, G. Dehollander, A. Fattah Haikal, F. Poortmans, J. Steyaert, L. Wyns
Hydrolysis Of A Slow Cyclic Thiophosphate Substrate Of Rnase T1 Analyzed By Time-Resolved Crystallography.
Nat. Struct. Biol. V. 5 280 1998
PubMed-ID: 9546218 | Reference-DOI: 10.1038/NSB0498-280
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 2)

Sites (5, 5)

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASP A:15 , HOH A:116 , HOH A:136 , HOH A:145 , HOH A:153 , HOH A:160	BINDING SITE FOR RESIDUE CA A 106
2	AC2	SOFTWARE	TYR A:38 , HIS A:40 , LYS A:41 , TYR A:42 , ASN A:43 , ASN A:44 , TYR A:45 , GLU A:46 , GLU A:58 , ARG A:77 , HIS A:92 , ASN A:98 , PHE A:100 , HOH A:117 , HOH A:148 , HOH A:205	BINDING SITE FOR RESIDUE SGP A 105
3	BI1	UNKNOWN	TYR A:42 , ASN A:43 , ASN A:44 , TYR A:45 , GLU A:46	SITE.
4	CAL	UNKNOWN	ASP A:15	SITE.
5	CAT	UNKNOWN	TYR A:38 , HIS A:40 , GLU A:58 , ARG A:77 , HIS A:92	ACTIVE SITE.

SS Bonds (2, 2)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:104
 aligned with RNT1_ASPOR | P00651 from UniProtKB/Swiss-Prot  Length:130

    Alignment length:104
                                    36        46        56        66        76        86        96       106       116       126    
           RNT1_ASPOR    27 ACDYTCGSNCYSSSDVSTAQAAGYQLHEDGETVGSNSYPHKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAGVITHTGASGNNFVECT 130
               SCOP domains d1gspa_ A: RNase T1                                                                                      SCOP domains
               CATH domains 1gspA00 A:1-104  [code=3.10.450.30, no name defined]                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..eeeehhhhhhhhhhhhhhhhh.........eeee............eeeeeeee.............eeeeee...eeeeeee........eeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 1gsp A   1 ACDYTCGSNCYSSSDVSTAQAAGYKLHEDGETVGSNSYPHKYNNYEGFDFSVSSPYYEWPILSSGDVYSGGSPGADRVVFNENNQLAGVITHTGASGNNFVECT 104
                                    10        20        30        40        50        60        70        80        90       100

Legend:		→ Mismatch	(orange background)
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		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (0, 0)

Gene Ontology (13, 13)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (RNT1_ASPOR | P00651)

molecular function
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0004519	endonuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
	GO:0004521	endoribonuclease activity	Catalysis of the hydrolysis of ester linkages within ribonucleic acid by creating internal breaks.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0004518	nuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids.
	GO:0046589	ribonuclease T1 activity	Catalysis of the endonucleolytic cleavage to nucleoside 3'-phosphates and 3'-phosphooligonucleotides ending in Gp with 2',3'-cyclic phosphate intermediates.
	GO:0004540	ribonuclease activity	Catalysis of the hydrolysis of phosphodiester bonds in chains of RNA.
biological process
	GO:0090501	RNA phosphodiester bond hydrolysis	The RNA metabolic process in which the phosphodiester bonds between ribonucleotides are cleaved by hydrolysis.
	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	The chemical reactions and pathways involving the hydrolysis of internal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides.
	GO:0008150	biological_process	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
	GO:0090305	nucleic acid phosphodiester bond hydrolysis	The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
cellular component
	GO:0030428	cell septum	A structure composed of peptidoglycan and often chitin in addition to other materials. It usually forms perpendicular to the long axis of a cell or hypha and grows centripetally from the cell wall to the center of the cell and often functions in the compartmentalization of a cell into two daughter cells.
	GO:0001411	hyphal tip	The end, or tip, of a fungal hypha, where polarized growth occurs during hyphal elongation.

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	Cis Peptide Bonds
		Ser A:54 - Pro A:55	[ RasMol ]
		Tyr A:38 - Pro A:39	[ RasMol ]

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