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1GQM
Biol. Unit 1
Info
Asym.Unit (184 KB)
Biol.Unit 1 (88 KB)
Biol.Unit 2 (87 KB)
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(1)
Title
:
THE STRUCTURE OF S100A12 IN A HEXAMERIC FORM
Authors
:
O. V. Moroz, A. A. Antson, E. G. Dodson, H. J. Burrel, S. J. Grist, R. M. Llo N. J. Maitland, G. G. Dodson, K. S. Wilson, E. Lukanidin, I. B. Bronstei
Date
:
26 Nov 01 (Deposition) - 28 Feb 02 (Release) - 28 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: G,H,I,J,K,L (1x)
Keywords
:
Antimicrobial Protein, S100A12, S100 Protein Family, Ef-Hand, Calcium Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. V. Moroz, A. A. Antson, E. J. Dodson, H. J. Burrell, S. J. Grist, R. M. Lloyd, N. J. Maitland, G. G. Dodson, K. S. Wilson, E. Lukanidin, I. B. Bronstein
The Structure Of S100A12 In A Hexameric Form And Its Proposed Role In Receptor Signalling
Acta Crystallogr. , Sect. D V. 58 407 2002
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1aa: CALCIUM ION (CAaa)
1ab: CALCIUM ION (CAab)
1ac: CALCIUM ION (CAac)
1ad: CALCIUM ION (CAad)
1ae: CALCIUM ION (CAae)
1af: CALCIUM ION (CAaf)
1ag: CALCIUM ION (CAag)
1ah: CALCIUM ION (CAah)
1ai: CALCIUM ION (CAai)
1aj: CALCIUM ION (CAaj)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
1j: CALCIUM ION (CAj)
1k: CALCIUM ION (CAk)
1l: CALCIUM ION (CAl)
1m: CALCIUM ION (CAm)
1n: CALCIUM ION (CAn)
1o: CALCIUM ION (CAo)
1p: CALCIUM ION (CAp)
1q: CALCIUM ION (CAq)
1r: CALCIUM ION (CAr)
1s: CALCIUM ION (CAs)
1t: CALCIUM ION (CAt)
1u: CALCIUM ION (CAu)
1v: CALCIUM ION (CAv)
1w: CALCIUM ION (CAw)
1x: CALCIUM ION (CAx)
1y: CALCIUM ION (CAy)
1z: CALCIUM ION (CAz)
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:18 , LYS A:21 , HIS A:23 , THR A:26 , GLU A:31
BINDING SITE FOR RESIDUE CA A1088
02
AC2
SOFTWARE
ASP A:61 , ASN A:63 , ASP A:65 , GLN A:67 , GLU A:72
BINDING SITE FOR RESIDUE CA A1089
03
AC3
SOFTWARE
GLN A:58 , GLN A:64 , GLU D:55
BINDING SITE FOR RESIDUE CA A1090
04
AC4
SOFTWARE
SER B:18 , LYS B:21 , HIS B:23 , THR B:26 , GLU B:31
BINDING SITE FOR RESIDUE CA B1089
05
AC5
SOFTWARE
ASP B:61 , ASN B:63 , ASP B:65 , GLN B:67 , GLU B:72 , HOH B:2001
BINDING SITE FOR RESIDUE CA B1090
06
AC6
SOFTWARE
GLN B:58 , GLN B:64 , GLU F:55
BINDING SITE FOR RESIDUE CA B1091
07
AC7
SOFTWARE
GLU B:55 , GLN C:58 , GLN C:64
BINDING SITE FOR RESIDUE CA C1088
08
AC8
SOFTWARE
SER C:18 , LYS C:21 , HIS C:23 , THR C:26 , GLU C:31
BINDING SITE FOR RESIDUE CA C1089
09
AC9
SOFTWARE
ASP C:61 , ASN C:63 , ASP C:65 , GLN C:67 , GLU C:72
BINDING SITE FOR RESIDUE CA C1090
10
BC1
SOFTWARE
GLU C:55 , GLN F:58 , GLN F:64
BINDING SITE FOR RESIDUE CA C1091
11
BC2
SOFTWARE
SER D:18 , LYS D:21 , HIS D:23 , THR D:26 , GLU D:31
BINDING SITE FOR RESIDUE CA D1088
12
BC3
SOFTWARE
ASP D:61 , ASN D:63 , ASP D:65 , GLN D:67 , GLU D:72
BINDING SITE FOR RESIDUE CA D1089
13
BC4
SOFTWARE
GLU A:55 , GLN E:58 , GLN E:64
BINDING SITE FOR RESIDUE CA E1088
14
BC5
SOFTWARE
SER E:18 , LYS E:21 , HIS E:23 , THR E:26 , GLU E:31
BINDING SITE FOR RESIDUE CA E1089
15
BC6
SOFTWARE
ASP E:61 , ASN E:63 , ASP E:65 , GLN E:67 , GLU E:72 , HOH E:2002
BINDING SITE FOR RESIDUE CA E1090
16
BC7
SOFTWARE
GLN D:58 , GLN D:64 , GLU E:55
BINDING SITE FOR RESIDUE CA E1091
17
BC8
SOFTWARE
SER F:18 , LYS F:21 , HIS F:23 , THR F:26 , GLU F:31
BINDING SITE FOR RESIDUE CA F1088
18
BC9
SOFTWARE
ASP F:61 , ASN F:63 , ASP F:65 , GLN F:67 , GLU F:72
BINDING SITE FOR RESIDUE CA F1089
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
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Sorry, no Info available
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]
PROSITE Patterns/Profiles
(2, 12)
Info
All PROSITE Patterns/Profiles
1: EF_HAND_2 (A:48-83,B:48-83,C:48-83,D:48-83,E:...)
2: S100_CABP (A:56-77,B:56-77,C:56-77,D:56-77,E:...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EF_HAND_2
PS50222
EF-hand calcium-binding domain profile.
S10AC_HUMAN
49-84
6
A:48-83
B:48-83
C:48-83
D:48-83
E:48-83
F:48-83
-
-
-
-
-
-
2
S100_CABP
PS00303
S-100/ICaBP type calcium binding protein signature.
S10AC_HUMAN
57-78
6
A:56-77
B:56-77
C:56-77
D:56-77
E:56-77
F:56-77
-
-
-
-
-
-
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1gqma_ (A:)
1b: SCOP_d1gqmc_ (C:)
1c: SCOP_d1gqmd_ (D:)
1d: SCOP_d1gqme_ (E:)
1e: SCOP_d1gqmf_ (F:)
1f: SCOP_d1gqmg_ (G:)
1g: SCOP_d1gqmh_ (H:)
1h: SCOP_d1gqmi_ (I:)
1i: SCOP_d1gqmj_ (J:)
1j: SCOP_d1gqmk_ (K:)
1k: SCOP_d1gqml_ (L:)
1l: SCOP_d1gqmb_ (B:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
EF Hand-like
(739)
Superfamily
:
EF-hand
(657)
Family
:
S100 proteins
(101)
Protein domain
:
Calcyclin (S100)
(69)
Human (Homo sapiens), calgranulin C, s100a12 [TaxId: 9606]
(3)
1a
d1gqma_
A:
1b
d1gqmc_
C:
1c
d1gqmd_
D:
1d
d1gqme_
E:
1e
d1gqmf_
F:
1f
d1gqmg_
G:
1g
d1gqmh_
H:
1h
d1gqmi_
I:
1i
d1gqmj_
J:
1j
d1gqmk_
K:
1k
d1gqml_
L:
1l
d1gqmb_
B:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1gqmB00 (B:1-88)
1b: CATH_1gqmH00 (H:1-88)
1c: CATH_1gqmA00 (A:1-87)
1d: CATH_1gqmC00 (C:1-87)
1e: CATH_1gqmD00 (D:1-87)
1f: CATH_1gqmE00 (E:1-87)
1g: CATH_1gqmF00 (F:1-87)
1h: CATH_1gqmG00 (G:1-87)
1i: CATH_1gqmI00 (I:1-87)
1j: CATH_1gqmJ00 (J:1-87)
1k: CATH_1gqmK00 (K:1-87)
1l: CATH_1gqmL00 (L:1-86)
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Classes
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(
)
Architectures
(
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Recoverin; domain 1
(474)
Homologous Superfamily
:
EF-hand
(412)
Human (Homo sapiens)
(106)
1a
1gqmB00
B:1-88
1b
1gqmH00
H:1-88
1c
1gqmA00
A:1-87
1d
1gqmC00
C:1-87
1e
1gqmD00
D:1-87
1f
1gqmE00
E:1-87
1g
1gqmF00
F:1-87
1h
1gqmG00
G:1-87
1i
1gqmI00
I:1-87
1j
1gqmJ00
J:1-87
1k
1gqmK00
K:1-87
1l
1gqmL00
L:1-86
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Atom Selection
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Chain F
Asymmetric Unit 1
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