Chain E from PDB Type:PROTEIN Length:177
aligned with RPOE1_METJA | Q57840 from UniProtKB/Swiss-Prot Length:187
Alignment length:184
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180
RPOE1_METJA 1 MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVVHGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERKRGSKIALTMRQPYLGKLEWIEEEKAKKQ 184
SCOP domains d1go3e2 E:1-78 N-terminal, heterodimerisation domain of RBP7 (RpoE) d1go3e1 E:79-184 C-terminal domain of RNA pol ymerase II subunit RBP7 (Rpo E) SCOP domains
CATH domains 1go3E02 E:1-81 DNA-directed RNA polymerase ii subunit; domain 1 1go3E01 E:82-182 Nucleic acid-binding prot eins -- CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeeeeeeeehhhhh..hhhhhhhhhhhhhhh..ee...eeeeeeeeeeee...........eeeeeeeeeeee......eeeeeeeeee..eeeee....eeeee.hhh....eee...--.eee.....ee....eeeeeeeeee...-----.eeeee........hhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------S1 PDB: E:82-166 UniProt: 82-166 ------------------ PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1go3 E 1 MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVVHGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPK--AIIGKETGKVLEIGDYVRARIVAISLKA-----SKIALTMRQPYLGKLEWIEEEKAKKQ 184
10 20 30 40 50 60 70 80 90 100 110 120 | | 130 140 150 | 160 170 180
123 | 153 159
126
Chain F from PDB Type:PROTEIN Length:107
aligned with Y039_METJA | Q60351 from UniProtKB/Swiss-Prot Length:115
Alignment length:107
18 28 38 48 58 68 78 88 98 108
Y039_METJA 9 MIGKKILGERYVTVSEAAEIMYNRAQIGELSYEQGCALDYLQKFAKLDKEEAKKLVEELISLGIDEKTAVKIADILPEDLDDLRAIYYKRELPENAEEILEIVRKYI 115
SCOP domains d1go3f_ F: RNA polymerase II subunit RBP4 (RpoF) SCOP domains
CATH domains 1go3F02 F:1-47 1go3F01 F:48-107 [code=1.10.150.80, no name defined] CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....eeeeeeeehhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhh..hhhhhhhhh.......hhhhhhhhhh... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------- Transcript
1go3 F 1 MIGKKILGERYVTVSEAAEIMYNRAQIGELSYEQGCALDYLQKFAKLDKEEAKKLVEELISLGIDEKTAVKIADILPEDLDDLRAIYYKRELPENAEEILEIVRKYI 107
10 20 30 40 50 60 70 80 90 100
Chain M from PDB Type:PROTEIN Length:174
aligned with RPOE1_METJA | Q57840 from UniProtKB/Swiss-Prot Length:187
Alignment length:181
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180
RPOE1_METJA 1 MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVVHGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERKRGSKIALTMRQPYLGKLEWIEEEKA 181
SCOP domains d1go3m2 M:1-78 N-terminal, heterodimerisation domain of RBP7 (RpoE) d1go3m1 M:79-181 C-terminal domain of RNA polymerase II subunit RBP7 (Rpo E) SCOP domains
CATH domains 1go3M02 M:1-81 DNA-directed RNA polymerase ii subunit; domain 1 1go3M01 M:82-180 Nucleic acid-binding proteins - CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeeeeeeeehhhhh..hhhhhhhhhhhhhhh..ee...eeeeeeeeeeee...........eeeeeeeeeeee......eeeeeeeeee..eeeee....eeeee.hhh....eeee....eeee.....eee...eeeeeeeeee.-------.eeeee........hhhhhhhhh Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------S1 PDB: M:82-166 UniProt: 82-166 --------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1go3 M 1 MYKILEIADVVKVPPEEFGKDLKETVKKILMEKYEGRLDKDVGFVLSIVDVKDIGEGKVVHGDGSAYHPVVFETLVYIPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISL-------SKIALTMRQPYLGKLEWIEEEKA 181
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150| 160 170 180
151 159
Chain N from PDB Type:PROTEIN Length:106
aligned with Y039_METJA | Q60351 from UniProtKB/Swiss-Prot Length:115
Alignment length:106
19 29 39 49 59 69 79 89 99 109
Y039_METJA 10 IGKKILGERYVTVSEAAEIMYNRAQIGELSYEQGCALDYLQKFAKLDKEEAKKLVEELISLGIDEKTAVKIADILPEDLDDLRAIYYKRELPENAEEILEIVRKYI 115
SCOP domains d1go3n_ N: RNA polymerase II subunit RBP4 (RpoF) SCOP domains
CATH domains 1go3N02 N:2-47 1go3N01 N:48-107 [code=1.10.150.80, no name defined] CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...eeeeeeeehhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhh.......hhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------- Transcript
1go3 N 2 IGKKILGERYVTVSEAAEIMYNRAQIGELSYEQGCALDYLQKFAKLDKEEAKKLVEELISLGIDEKTAVKIADILPEDLDDLRAIYYKRELPENAEEILEIVRKYI 107
11 21 31 41 51 61 71 81 91 101
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |