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(-) Description

Title :  THEORETICAL MODEL STRUCTURE OF ACTINIDIN WITH DIFFERENT BIOLOGICALLY IMPORTANT INHIBITORS
 
Authors :  S. Bhattacharya, A. Banerjee
Date :  28 Aug 00  (Deposition) - 25 Oct 00  (Release) - 25 Oct 00  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,B
Keywords :  Cysteine Proteinase Inhibitor, Thiol Protease Inhibitor, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Bhattacharya, A. Pal, A. Bera, S. Chakraborty, S. Ghosh, A. Banerjee
Theoretical Model Structure Of Actinidin With Different Biologically Important Inhibitors
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ACTINIDIN
    Chains: A
    EC Number: 3.4.22.14
    Organism Common: CHINESE GOOSEBERRY, KIWIFRUIT
    Organism Scientific: ACTINIDIA CHINENSIS
 
Molecule 2 - LEUPEPTIN
    Chains: B
    Organism Common: BACTERIA
    Organism Scientific: ACTINOMYCES SP.

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Theoretical Model (1, 1)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP

(-) Sites  (0, 0)

(no "Site" information available for 1FOG)

(-) SS Bonds  (3, 3)

Theoretical Model
No.Residues
1A:22 -A:65
2A:56 -A:98
3A:156 -A:206

(-) Cis Peptide Bonds  (1, 1)

Theoretical Model
No.Residues
1Gly A:154 -Pro A:155

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1FOG)

(-) PROSITE Motifs  (3, 3)

Theoretical Model (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1THIOL_PROTEASE_CYSPS00139 Eukaryotic thiol (cysteine) proteases cysteine active site.ACTN_ACTCH145-156  1A:19-30
2THIOL_PROTEASE_HISPS00639 Eukaryotic thiol (cysteine) proteases histidine active site.ACTN_ACTCH286-296  1A:161-170
3THIOL_PROTEASE_ASNPS00640 Eukaryotic thiol (cysteine) proteases asparagine active site.ACTN_ACTCH303-322  1A:177-196

(-) Exons   (0, 0)

(no "Exon" information available for 1FOG)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:218
 aligned with ACTN_ACTCH | P00785 from UniProtKB/Swiss-Prot  Length:380

    Alignment length:218
                                   136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336        
           ACTN_ACTCH   127 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAVDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPVKY 344
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.hhhh............hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhh.....hhh...hhhhhhhhhhhhh.................hhhhhhh......eeee....hhhhhhhhhhhh.eeeee...hhhhhhh...ee.........eeeeeeeeeee..eeeeeee...........eeeee......hhhhh....eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------THIOL_PROTEA---------------------------------------------------------------------------------------------------------------------------------THIOL_PROTE------THIOL_PROTEASE_ASN  ---------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fog A   1 LPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVALQNEKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSYPVKY 218
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210        


Chain B from PDB  Type:PROTEIN  Length:4
                                    
               SCOP domains ---- SCOP domains
               CATH domains ---- CATH domains
               Pfam domains ---- Pfam domains
         Sec.struct. author .... Sec.struct. author
                 SAPs(SNPs) ---- SAPs(SNPs)
                    PROSITE ---- PROSITE
                 Transcript ---- Transcript
                 1fog B 300 xLLR 303
                            |   
                          300-ACE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1FOG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1FOG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1FOG)

(-) Gene Ontology  (4, 4)

Theoretical Model(hide GO term definitions)
Chain A   (ACTN_ACTCH | P00785)
molecular function
    GO:0008234    cysteine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.

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  Cis Peptide Bonds
    Gly A:154 - Pro A:155   [ RasMol ]  
 

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  1fog
    Family and Domain Information: ProDom | SYSTERS
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  3.4.22.14
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ACTN_ACTCH | P00785: 1aec 1f3q 1ftv 2act

(-) Related Entries Specified in the PDB File

1c7x 1C7X CONTAINS MODEL STRUCTURE OF A CARICAIN D158E MUTANT IN COMPLEX WITH ZPACK
1eux 1EUX CONTAINS MODEL STRUCTURE OF A CARICAIN D158E MUTANT IN COMPLEX WITH E-64C
1f1i 1F1I CONTAINS MODEL STRUCTURE OF A CARICAIN D158E MUTANT IN COMPLEX WITH LEUPEPTIN (ACETYL-L-LEUCYL-L-LEUCYL-L-ARGINAL)
1f3q IF3Q CONTAINS MODEL STRUCTURE OF ACTINIDIN IN COMPLEX WITH ZPACK (N-BENZYLOXYCARBONYL-L-PHENYL ALANYL-L-ALANINE CHLOROMETHYL KETONE)