1FJ0 - JenaLib

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG C:18 , ALA C:19 , ASP C:20 , LYS C:21 , HOH C:465	BINDING SITE FOR RESIDUE SO4 C 656
2	AC2	SOFTWARE	ARG A:18 , ALA A:19 , ASP A:20 , LYS A:21	BINDING SITE FOR RESIDUE SO4 A 657
3	AC3	SOFTWARE	GLN A:12 , CYS A:13 , CYS A:16 , HIS A:17 , VAL A:24 , GLY A:25 , PRO A:26 , ARG A:34 , ALA A:36 , GLY A:37 , PHE A:42 , TYR A:44 , SER A:45 , ASN A:48 , TRP A:58 , TYR A:66 , THR A:91 , LYS A:92 , MET A:93 , PHE A:95 , HOH A:659	BINDING SITE FOR RESIDUE HEM A 115
4	AC4	SOFTWARE	THR A:59 , GLN B:12 , CYS B:13 , CYS B:16 , HIS B:17 , VAL B:24 , GLY B:25 , PRO B:26 , ARG B:34 , ALA B:36 , GLY B:37 , TYR B:44 , SER B:45 , ASN B:48 , TRP B:58 , TYR B:66 , THR B:91 , LYS B:92 , MET B:93 , PHE B:95 , HOH B:126	BINDING SITE FOR RESIDUE HEM B 115
5	AC5	SOFTWARE	GLN C:12 , CYS C:13 , CYS C:16 , HIS C:17 , VAL C:24 , GLY C:25 , PRO C:26 , ARG C:34 , ALA C:36 , GLY C:37 , PHE C:42 , TYR C:44 , SER C:45 , ASN C:48 , TRP C:58 , TYR C:66 , THR C:91 , LYS C:92 , MET C:93 , THR C:94 , PHE C:95 , HOH C:338 , THR D:59	BINDING SITE FOR RESIDUE HEM C 115
6	AC6	SOFTWARE	THR C:59 , GLN D:12 , CYS D:13 , CYS D:16 , HIS D:17 , VAL D:24 , GLY D:25 , PRO D:26 , ARG D:34 , ALA D:36 , GLY D:37 , TYR D:44 , SER D:45 , ASN D:48 , TRP D:58 , TYR D:66 , THR D:91 , LYS D:92 , MET D:93 , PHE D:95 , HOH D:127	BINDING SITE FOR RESIDUE HEM D 115
7	AC7	SOFTWARE	LYS C:35 , GLU C:53 , HOH C:626 , ALA D:8 , VAL D:9 , LYS D:11 , GLN D:12	BINDING SITE FOR RESIDUE GOL C 655

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:114
 aligned with CYC22_RHOPA | P00091 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:114
                                    35        45        55        65        75        85        95       105       115       125       135    
          CYC22_RHOPA    26 QDAKAGEAVFKQCMTCHRADKNMVGPALGGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIINYLNDPNAFLKKFLTDKGKADQAVGVTKMTFKLANEQQRKDVVAYLATLK 139
               SCOP domains d1fj0a_ A: Cytochrome c2                                                                                           SCOP domains
               CATH domains -1fj0A00 A:2-114 Cytochrome c                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh..............................hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE CYTC  PDB: A:2-114 UniProt: 26-139                                                                                 PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 1fj0 A   1 xDAKAGEAVFKQCMTCHRADKNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIVPYLADPNAFLKKFLTEKGKADQAVGVTKMTFKLANEQQRKDVVAYLATLK 114
                            |       10        20        30        40        50        60        70        80        90       100       110    
                            |                                                                                                                 
                            1-PCA

Chain B from PDB  Type:PROTEIN  Length:114
 aligned with CYC22_RHOPA | P00091 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:114
                                    35        45        55        65        75        85        95       105       115       125       135    
          CYC22_RHOPA    26 QDAKAGEAVFKQCMTCHRADKNMVGPALGGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIINYLNDPNAFLKKFLTDKGKADQAVGVTKMTFKLANEQQRKDVVAYLATLK 139
               SCOP domains d1fj0b_ B: Cytochrome c2                                                                                           SCOP domains
               CATH domains -1fj0B00 B:2-114 Cytochrome c                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh..............................hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh.hhhhhh..........hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE CYTC  PDB: B:2-114 UniProt: 26-139                                                                                 PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 1fj0 B   1 xDAKAGEAVFKQCMTCHRADKNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIVPYLADPNAFLKKFLTEKGKADQAVGVTKMTFKLANEQQRKDVVAYLATLK 114
                            |       10        20        30        40        50        60        70        80        90       100       110    
                            1-PCA

Chain C from PDB  Type:PROTEIN  Length:114
 aligned with CYC22_RHOPA | P00091 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:114
                                    35        45        55        65        75        85        95       105       115       125       135    
          CYC22_RHOPA    26 QDAKAGEAVFKQCMTCHRADKNMVGPALGGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIINYLNDPNAFLKKFLTDKGKADQAVGVTKMTFKLANEQQRKDVVAYLATLK 139
               SCOP domains d1fj0c_ C: Cytochrome c2                                                                                           SCOP domains
               CATH domains -1fj0C00 C:2-114 Cytochrome c                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh..............................hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh.hhhhhh..........hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE CYTC  PDB: C:2-114 UniProt: 26-139                                                                                 PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 1fj0 C   1 xDAKAGEAVFKQCMTCHRADKNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIVPYLADPNAFLKKFLTEKGKADQAVGVTKMTFKLANEQQRKDVVAYLATLK 114
                            |       10        20        30        40        50        60        70        80        90       100       110    
                            1-PCA

Chain D from PDB  Type:PROTEIN  Length:114
 aligned with CYC22_RHOPA | P00091 from UniProtKB/Swiss-Prot  Length:139

    Alignment length:114
                                    35        45        55        65        75        85        95       105       115       125       135    
          CYC22_RHOPA    26 QDAKAGEAVFKQCMTCHRADKNMVGPALGGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIINYLNDPNAFLKKFLTDKGKADQAVGVTKMTFKLANEQQRKDVVAYLATLK 139
               SCOP domains d1fj0d_ D: Cytochrome c2                                                                                           SCOP domains
               CATH domains -1fj0D00 D:2-114 Cytochrome c                                                                                      CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh..............................hhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh.hhhhhh..........hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE CYTC  PDB: D:2-114 UniProt: 26-139                                                                                 PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 1fj0 D   1 xDAKAGEAVFKQCMTCHRADKNMVGPALAGVVGRKAGTAAGFTYSPLNHNSGEAGLVWTADNIVPYLADPNAFLKKFLTEKGKADQAVGVTKMTFKLANEQQRKDVVAYLATLK 114
                            |       10        20        30        40        50        60        70        80        90       100       110    
                            1-PCA

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (1, 4)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D (CYC22_RHOPA | P00091)

molecular function
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0015979	photosynthesis	The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.

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	1fj0
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 11)

Sites (7, 7)