1FCF - JenaLib

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Biological Unit 2 (Jmol Viewer)

Title :   PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE

Authors :   D. I. Liao, J. Qian, D. A. Chisholm, D. B. Jordan, B. A. Diner

Date :   18 Jul 00 (Deposition) - 18 Jan 01 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A
Biol. Unit 1: A  (1x)
Biol. Unit 2: A  (3x)

Keywords :   D1 C-Terminal Processing Protease, Serine Protease, Serine-Lysine Catalytic Dyad, Pdz Domain, Photosystem Ii, Photosynthesis, X-Ray Crystal Structure, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. I. Liao, J. Qian, D. A. Chisholm, D. B. Jordan, B. A. Diner
Crystal Structures Of The Photosystem Ii D1 C-Terminal Processing Protease.
Nat. Struct. Biol. V. 7 749 2000
PubMed-ID: 10966643 | Reference-DOI: 10.1038/78973

Molecule 1 - PHOTOSYSTEM II D1 PROTEASE
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET-32(A)-D1P(+AM)
	Expression System Strain	:	BL21(DE3)PLYS
	Expression System Taxid	:	469008
	Fragment	:	RESIDUES 77-464
	Organism Scientific	:	SCENEDESMUS OBLIQUUS
	Organism Taxid	:	3088
	Synonym	:	D1 C-TERMINAL PROCESSING PROTEASE

		1
Asymmetric Unit	:	A
Biological Unit 1 (1x)	:	A
Biological Unit 2 (3x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 6)

No.	Name	Count	Type	Full Name
1	SO4	6	Ligand/Ion	SULFATE ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:121 , ARG A:122 , ALA A:123 , PRO A:184 , HOH A:474 , HOH A:526	BINDING SITE FOR RESIDUE SO4 A 465
2	AC2	SOFTWARE	ARG A:90 , LYS A:108 , ARG A:110	BINDING SITE FOR RESIDUE SO4 A 466

Asymmetric Unit

No.	Residues
1	A:260	-	A:451

(no "Cis Peptide Bond" information available for 1FCF)

(no "SAP(SNP)/Variant" information available for 1FCF)

Asymmetric Unit (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PDZ	PS50106	PDZ domain profile.	CTPA_TETOB	149-220	1	A:149-220

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PDZ	PS50106	PDZ domain profile.	CTPA_TETOB	149-220	1	A:149-220

Biological Unit 2 (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PDZ	PS50106	PDZ domain profile.	CTPA_TETOB	149-220	3	A:149-220

(no "Exon" information available for 1FCF)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:387
 aligned with CTPA_TETOB | O04073 from UniProtKB/Swiss-Prot  Length:464

    Alignment length:387
                                    86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       
           CTPA_TETOB    77 AVTSEQLLFLEAWRAVDRAYVDKSFNGQSWFKLRETYLKKEPMDRRAQTYDAIRKLLAVLDDPFTRFLEPSRLAALRRGTAGSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGLSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTLQLTRQKVTINPVTFTTCSNVAAAALPPGAAKQQLGYVRLATFNSNTTAAAQQAFTELSKQGVAGLVLDIRNNGGGLFPAGVNVARMLVDRGDLVLIADSQGIRDIYSADGNSIDSATPLVVLVNRGTASASEVLAGALKDSKRGLIAGERTFGKGLIQTVVDLSDGSGVAVTVARYQTPAGVDINKIGVSPDVQLDPEVLPTDLEGVCRVLGSDAAPRLF 463
               SCOP domains d1fcfa4 A:77-156,A:249-463 Photosystem II D1 C-terminal processing protease     d1fcfa3 A:157-248 Photosystem II D1 C-terminal processing protease                          d1fcfa4 A:77-156,A:249-463 Photosystem II D1 C-terminal processing protease                                                                                                                                             SCOP domains
               CATH domains 1fcfA01 A:77-160,A:400-414  [code=3.30.750.34, no name defined]                     1fcfA02 A:161-252  [code=2.30.42.10, no name defined]                                       1fcfA03 A:253-399,A:415-463 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                               1fcfA01        1fcfA03 A:253-399,A:415-463                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh......eee..hhhhhh............eeeee.......eeeeee.....hhhhh.....eeeee..ee....hhhhhhhhhh.....eeeeeee.......eeeeeee........eeeeee...hhhhh........eeeeee.....hhhhhhhhhhhhhhhhh..eeeee.......hhhhhhhhhhhhh...eeeeeee..eeeeeee...........eeeee.....hhhhhhhhhhhhh...eeee.......eeeeeee.....eeeeeeeeee.....hhhhhh....ee........hhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------PDZ  PDB: A:149-220 UniProt: 149-220                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fcf A  77 MVTSEQLLFLEAWRAVDRAYVDKSFNGQSWFKLRETYLKKEPMDRRAQTYDAIRKLLAVLDDPFTRFLEPSRLAALRRGTAGSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGLSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTLQLTRQKVTINPVTFTTCSNVAAAALPPGAAKQQLGYVRLATFNSNTTAAAQQAFTELSKQGVAGLVLDIRNNGGGLFPAGVNVARMLVDRGDLVLIADSQGIRDIYSADGNSIDSATPLVVLVNRGTASASEVLAGALKDSKRGLIAGERTFGKGLIQTVVDLSDGSGVAVTVARYQTPAGVDINKIGVSPDVQLDPEVLPTDLEGVCRVLGSDAAPRLF 463
                                    86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "Pfam Domain" information available for 1FCF)

Asymmetric Unit(hide GO term definitions)

Chain A (CTPA_TETOB | O04073)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0008236	serine-type peptidase activity	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
	GO:0009507	chloroplast	A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
	GO:0009543	chloroplast thylakoid lumen	The cavity enclosed within the chloroplast thylakoid membrane. An example of this component is found in Arabidopsis thaliana.
	GO:0009536	plastid	Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.
	GO:0009579	thylakoid	A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.

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Biological Units
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		Biological Unit 2	[ Jena3D ]

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	1fcf
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UniProtKB/Swiss-Prot
	CTPA_TETOB \| O04073	:	1fc6 1fc7 1fc9

1fc6	STRUCTURE OF SELENO-MET DERIVATIVE OF L132M/L210M MUTANT
1fc7	STRUCTURE OF THE SAME ENZYME IN DIFFERENT CRYSTAL FORM
1fc9	STRUCTURE OF THE SAME ENZYME IN DIFFERENT CRYSTAL FORM

Description

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Ligands, Modified Residues, Ions (1, 2)

Sites (2, 2)

SS Bonds (1, 1)

Cis Peptide Bonds (0, 0)

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