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(-) Description

Title :  PHOTOSYSTEM II D1 C-TERMINAL PROCESSING PROTEASE
 
Authors :  D. I. Liao, J. Qian, D. A. Chisholm, D. B. Jordan, B. A. Diner
Date :  18 Jul 00  (Deposition) - 18 Jan 01  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  D1 C-Terminal Processing Protease, Serine Protease, Serine- Lysine Catalytic Dyad, Pdz Domain, Photosystem Ii, Photosynthesis, X-Ray Crystal Structure, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. I. Liao, J. Qian, D. A. Chisholm, D. B. Jordan, B. A. Diner
Crystal Structures Of The Photosystem Ii D1 C-Terminal Processing Protease.
Nat. Struct. Biol. V. 7 749 2000
PubMed-ID: 10966643  |  Reference-DOI: 10.1038/78973
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PHOTOSYSTEM II D1 PROTEASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-32(A)-D1P(+AM)
    Expression System Strain: BL21(DE3)PLYS
    Expression System Taxid: 562
    Fragment: RESIDUES 77-464
    Organism Scientific: SCENEDESMUS OBLIQUUS
    Organism Taxid: 3088
    Synonym: D1 C-TERMINAL PROCESSING PROTEASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1FC9)

(-) Sites  (0, 0)

(no "Site" information available for 1FC9)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:260 -A:451

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1FC9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1FC9)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PDZPS50106 PDZ domain profile.CTPA_TETOB149-220  1A:149-220

(-) Exons   (0, 0)

(no "Exon" information available for 1FC9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:386
 aligned with CTPA_TETOB | O04073 from UniProtKB/Swiss-Prot  Length:464

    Alignment length:386
                                    87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457      
           CTPA_TETOB    78 VTSEQLLFLEAWRAVDRAYVDKSFNGQSWFKLRETYLKKEPMDRRAQTYDAIRKLLAVLDDPFTRFLEPSRLAALRRGTAGSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGLSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTLQLTRQKVTINPVTFTTCSNVAAAALPPGAAKQQLGYVRLATFNSNTTAAAQQAFTELSKQGVAGLVLDIRNNGGGLFPAGVNVARMLVDRGDLVLIADSQGIRDIYSADGNSIDSATPLVVLVNRGTASASEVLAGALKDSKRGLIAGERTFGKGLIQTVVDLSDGSGVAVTVARYQTPAGVDINKIGVSPDVQLDPEVLPTDLEGVCRVLGSDAAPRLF 463
               SCOP domains d1fc9a4 A:78-156,A:249-463 Photosystem II D1 C-terminal processing protease    d1fc9a3 A:157-248 Photosystem II D1 C-terminal processing protease                          d1fc9a4 A:78-156,A:249-463 Photosystem II D1 C-terminal processing protease                                                                                                                                             SCOP domains
               CATH domains 1fc9A01 A:78-160,A:400-414  [code=3.30.750.34, no name defined]                    1fc9A02 A:161-252  [code=2.30.42.10, no name defined]                                       1fc9A03 A:253-399,A:415-463 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                               1fc9A01        1fc9A03 A:253-399,A:415-463                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh......eeehhhhhhhhhhh.........eeeee.......eeeeee...hhhhhhh.....eeeee..ee....hhhhhhhhhh.....eeeeeee.......eeeeeee........eeeeeee..hhhhh.......eeeeeee.....hhhhhhhhhhhhhhhh...eeeee.......hhhhhhhhhhhhh...eeeeee....eeeeee...........eeeee.....hhhhhhhhhhhhh...eeee.......eeeeeee.....eeeeeeeeee...............ee........hhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------PDZ  PDB: A:149-220 UniProt: 149-220                                    --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1fc9 A  78 VTSEQLLFLEAWRAVDRAYVDKSFNGQSWFKLRETYLKKEPMDRRAQTYDAIRKLLAVLDDPFTRFLEPSRLAALRRGTAGSVTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGLSLYDVSDLLQGEADSQVEVVLHAPGAPSNTRTLQLTRQKVTINPVTFTTCSNVAAAALPPGAAKQQLGYVRLATFNSNTTAAAQQAFTELSKQGVAGLVLDIRNNGGGLFPAGVNVARMLVDRGDLVLIADSQGIRDIYSADGNSIDSATPLVVLVNRGTASASEVLAGALKDSKRGLIAGERTFGKGLIQTVVDLSDGSGVAVTVARYQTPAGVDINKIGVSPDVQLDPEVLPTDLEGVCRVLGSDAAPRLF 463
                                    87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (3, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1FC9)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (CTPA_TETOB | O04073)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
    GO:0009507    chloroplast    A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.
    GO:0009543    chloroplast thylakoid lumen    The cavity enclosed within the chloroplast thylakoid membrane. An example of this component is found in Arabidopsis thaliana.
    GO:0009536    plastid    Any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. Plant plastids develop from a common type, the proplastid.
    GO:0009579    thylakoid    A membranous cellular structure that bears the photosynthetic pigments in plants, algae, and cyanobacteria. In cyanobacteria thylakoids are of various shapes and are attached to, or continuous with, the plasma membrane. In eukaryotes they are flattened, membrane-bounded disk-like structures located in the chloroplasts; in the chloroplasts of higher plants the thylakoids form dense stacks called grana. Isolated thylakoid preparations can carry out photosynthetic electron transport and the associated phosphorylation.

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  1fc9
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CTPA_TETOB | O04073: 1fc6 1fc7 1fcf

(-) Related Entries Specified in the PDB File

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1fc7 STRUCTURE OF THE SAME ENZYME IN DIFFERENT CRYSTAL FORM (SAME SPACE GROUP, DIFFERENT CELL DIMENSIONS)
1fc9 STRUCTURE OF THE SAME ENZYME IN DIFFERENT CRYSTAL FORM