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Title :   CRYSTAL STRUCTURE OF MJ0796 ATP-BINDING CASSETTE

Authors :   Y. -R. Yuan, J. F. Hunt

Date :   05 Jun 00 (Deposition) - 25 Jul 01 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Transporter, Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. R. Yuan, S. Blecker, O. Martsinkevich, L. Millen, P. J. Thomas, J. F. Hunt
The Crystal Structure Of The Mj0796 Atp-Binding Cassette. Implications For The Structural Consequences Of Atp Hydrolysis In The Active Site Of An Abc Transporter.
J. Biol. Chem. V. 276 32313 2001
PubMed-ID: 11402022 | Reference-DOI: 10.1074/JBC.M100758200
(for further references see the PDB file header)

Molecule 1 - HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN MJ0796
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Gene	:	GENOMIC DNA
	Expression System Plasmid	:	PET28A
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	METHANOCALDOCOCCUS JANNASCHII
	Organism Taxid	:	2190

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 9)

No.	Name	Count	Type	Full Name
1	ADP	1	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	MG	1	Ligand/Ion	MAGNESIUM ION
3	MSE	7	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (2, 16)

No.	Name	Count	Type	Full Name
1	ADP	2	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	MSE	14	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:45 , ADP A:300	BINDING SITE FOR RESIDUE MG A 301
2	AC2	SOFTWARE	TYR A:11 , ALA A:20 , PRO A:39 , SER A:40 , GLY A:41 , SER A:42 , GLY A:43 , LYS A:44 , SER A:45 , THR A:46 , LYS A:56 , ALA A:115 , MG A:301 , HOH A:404 , HOH A:457	BINDING SITE FOR RESIDUE ADP A 300

(no "SS Bond" information available for 1F3O)

(no "Cis Peptide Bond" information available for 1F3O)

(no "SAP(SNP)/Variant" information available for 1F3O)

Asymmetric Unit (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ABC_TRANSPORTER_1	PS00211	ABC transporters family signature.	Y796_METJA	146-160	1	A:146-160

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ABC_TRANSPORTER_1	PS00211	ABC transporters family signature.	Y796_METJA	146-160	2	A:146-160

(no "Exon" information available for 1F3O)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:232
 aligned with Y796_METJA | Q58206 from UniProtKB/Swiss-Prot  Length:235

    Alignment length:232
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230  
           Y796_METJA     1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232
               SCOP domains d1f3oa_ A: MJ0796                                                                                                                                                                                                                        SCOP domains
               CATH domains -1f3oA00 A:2-232 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee....eeeeeeeeeeee.....eeee.....hhhhhhhhhh........eeee..ee....hhhhhhhhhhhheee...........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhhh...eeeeee.hhhhhh...eeeeee..eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------ABC_TRANSPORTER------------------------------------------------------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1f3o A   1 mIKLKNVTKTYKmGEEIIYALKNVNLNIKEGEFVSImGPSGSGKSTmLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAmSGEERRKRALECLKmAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKImQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232
                            |       10  |     20        30      | 40      | 50        60        70        80        90       100       110     | 120       130|      140       150       160       170       180    |  190       200       210       220       230  
                            |          13-MSE                  37-MSE    47-MSE                                                              116-MSE        131-MSE                                               185-MSE                                           
                            1-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

)

Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: P-loop containing nucleoside triphosphate hydrolases (2083)

Superfamily: P-loop containing nucleoside triphosphate hydrolases (2083)

Family: ABC transporter ATPase domain-like (94)

Protein domain: MJ0796 (2)

Methanococcus jannaschii [TaxId: 2190] (2)

d1f3oa_

Asymmetric Unit

Classes(

)

Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

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Organisms( (-)

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Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: P-loop containing nucleotide triphosphate hydrolases (1378)

Methanocaldococcus jannaschii. Organism_taxid: 2190. (4)

1f3oA00

A:2-232

(no "Pfam Domain" information available for 1F3O)

Asymmetric Unit(hide GO term definitions)

Chain A (Y796_METJA | Q58206)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0016887	ATPase activity	Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.

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